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Conserved domains on  [gi|571142490|dbj|GAE47681|]
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alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Mesobacillus boroniphilus JCM 21738]

Protein Classification

helix-turn-helix domain-containing protein( domain architecture ID 10452771)

helix-turn-helix (HTH) domain-containing protein may bind DNA and function as a transcriptional regulator

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Trans_reg_C pfam00486
Transcriptional regulatory protein, C terminal;
14-87 4.14e-39

Transcriptional regulatory protein, C terminal;


:

Pssm-ID: 425712 [Multi-domain]  Cd Length: 77  Bit Score: 124.55  E-value: 4.14e-39
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 571142490  14 LELTPKEFELLLYLAKNKGRVLTRDQLLSAVWNYDFAGDTRIVDVHISHLREKIEQNTKKPSYIKTIRGLGYKL 87
Cdd:pfam00486  4 VELTPKEFKLLELLAENPGRVVSREQLLEEVWGEDYDVDDNTVDVHISRLRKKLEDDPRDPRLIKTVRGVGYRL 77
 
Name Accession Description Interval E-value
Trans_reg_C pfam00486
Transcriptional regulatory protein, C terminal;
14-87 4.14e-39

Transcriptional regulatory protein, C terminal;


Pssm-ID: 425712 [Multi-domain]  Cd Length: 77  Bit Score: 124.55  E-value: 4.14e-39
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 571142490  14 LELTPKEFELLLYLAKNKGRVLTRDQLLSAVWNYDFAGDTRIVDVHISHLREKIEQNTKKPSYIKTIRGLGYKL 87
Cdd:pfam00486  4 VELTPKEFKLLELLAENPGRVVSREQLLEEVWGEDYDVDDNTVDVHISRLRKKLEDDPRDPRLIKTVRGVGYRL 77
trans_reg_C cd00383
DNA-binding effector domain of two-component system response regulators; Bacteria and some ...
 14-87 9.83e-38

DNA-binding effector domain of two-component system response regulators; Bacteria and some eukaryotes use two-component signal transduction systems to detect and respond to changes in the environment. The systems consists of a sensor histidine kinase and a response regulator. The former autophosphorylates a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. This C-terminal effector domain belongs to the winged helix-turn-helix family of transcriptional regulators and contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunit of RNA polymerase.


Pssm-ID: 294013 [Multi-domain]  Cd Length: 89  Bit Score: 121.43  E-value: 9.83e-38
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 571142490 14 LELTPKEFELLLYLAKNKGRVLTRDQLLSAVWNYDFAGDTRIVDVHISHLREKIEQNtKKPSYIKTIRGLGYKL 87
Cdd:cd00383  17 VELTPKEFELLELLARNPGRVVSREELLEAVWGYDYEVDDRTVDVHISRLRKKLEDD-PEPRLIKTVRGVGYRL 89
Trans_reg_C smart00862
Transcriptional regulatory protein, C terminal; This domain is almost always found associated ...
 14-87 1.57e-34

Transcriptional regulatory protein, C terminal; This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.


Pssm-ID: 214866 [Multi-domain]  Cd Length: 76  Bit Score: 113.03  E-value: 1.57e-34
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 571142490   14 LELTPKEFELLLYLAKNKGRVLTRDQLLSAVWNYDFAGDTRIVDVHISHLREKIEQNtKKPSYIKTIRGLGYKL 87
Cdd:smart00862  4 IKLTPKEFRLLELLLRNPGRVVSREELLEAVWGDDEDVDDNTLDVHISRLRKKLEDD-GDPRLIETVRGVGYRL 76
OmpR COG0745
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain ...
 2-79 1.06e-24

DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain [Signal transduction mechanisms, Transcription];


Pssm-ID: 440508 [Multi-domain]  Cd Length: 204  Bit Score: 91.56  E-value: 1.06e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 571142490   2 PDFYEAYFMENLLELTPKEFELLLYLAKNKGRVLTRDQLLSAVWNYDFaGDTRIVDVHISHLREKIEQNtkkpsYIKT 79
Cdd:COG0745  133 LAAREVTRDGEPVELTPKEFRLLELLMRNPGRVVSREQLLEEVWGYDY-GDDRTVDVHISRLRKKLEDD-----LIET 204
orf27 CHL00148
Ycf27; Reviewed
 12-86 3.56e-20

Ycf27; Reviewed


Pssm-ID: 214376 [Multi-domain]  Cd Length: 240  Bit Score: 80.92  E-value: 3.56e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 571142490  12 NLLELTPKEFELLLYLAKNKGRVLTRDQLLSAVWNYDFAG--DTRIVDVHISHLREKIEQNTKKPSYIKTIRGLGYK 86
Cdd:CHL00148 158 ERIRLTGMEFSLLELLISKSGEIFSRATILKEVWGYTPERhiDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYL 234
 
Name Accession Description Interval E-value
Trans_reg_C pfam00486
Transcriptional regulatory protein, C terminal;
14-87 4.14e-39

Transcriptional regulatory protein, C terminal;


Pssm-ID: 425712 [Multi-domain]  Cd Length: 77  Bit Score: 124.55  E-value: 4.14e-39
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 571142490  14 LELTPKEFELLLYLAKNKGRVLTRDQLLSAVWNYDFAGDTRIVDVHISHLREKIEQNTKKPSYIKTIRGLGYKL 87
Cdd:pfam00486  4 VELTPKEFKLLELLAENPGRVVSREQLLEEVWGEDYDVDDNTVDVHISRLRKKLEDDPRDPRLIKTVRGVGYRL 77
trans_reg_C cd00383
DNA-binding effector domain of two-component system response regulators; Bacteria and some ...
 14-87 9.83e-38

DNA-binding effector domain of two-component system response regulators; Bacteria and some eukaryotes use two-component signal transduction systems to detect and respond to changes in the environment. The systems consists of a sensor histidine kinase and a response regulator. The former autophosphorylates a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. This C-terminal effector domain belongs to the winged helix-turn-helix family of transcriptional regulators and contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunit of RNA polymerase.


Pssm-ID: 294013 [Multi-domain]  Cd Length: 89  Bit Score: 121.43  E-value: 9.83e-38
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 571142490 14 LELTPKEFELLLYLAKNKGRVLTRDQLLSAVWNYDFAGDTRIVDVHISHLREKIEQNtKKPSYIKTIRGLGYKL 87
Cdd:cd00383  17 VELTPKEFELLELLARNPGRVVSREELLEAVWGYDYEVDDRTVDVHISRLRKKLEDD-PEPRLIKTVRGVGYRL 89
Trans_reg_C smart00862
Transcriptional regulatory protein, C terminal; This domain is almost always found associated ...
 14-87 1.57e-34

Transcriptional regulatory protein, C terminal; This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.


Pssm-ID: 214866 [Multi-domain]  Cd Length: 76  Bit Score: 113.03  E-value: 1.57e-34
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 571142490   14 LELTPKEFELLLYLAKNKGRVLTRDQLLSAVWNYDFAGDTRIVDVHISHLREKIEQNtKKPSYIKTIRGLGYKL 87
Cdd:smart00862  4 IKLTPKEFRLLELLLRNPGRVVSREELLEAVWGDDEDVDDNTLDVHISRLRKKLEDD-GDPRLIETVRGVGYRL 76
OmpR COG0745
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain ...
 2-79 1.06e-24

DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain [Signal transduction mechanisms, Transcription];


Pssm-ID: 440508 [Multi-domain]  Cd Length: 204  Bit Score: 91.56  E-value: 1.06e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 571142490   2 PDFYEAYFMENLLELTPKEFELLLYLAKNKGRVLTRDQLLSAVWNYDFaGDTRIVDVHISHLREKIEQNtkkpsYIKT 79
Cdd:COG0745  133 LAAREVTRDGEPVELTPKEFRLLELLMRNPGRVVSREQLLEEVWGYDY-GDDRTVDVHISRLRKKLEDD-----LIET 204
CadC1 COG3710
DNA-binding winged helix-turn-helix (wHTH) domain [Transcription];
14-90 1.45e-22

DNA-binding winged helix-turn-helix (wHTH) domain [Transcription];


Pssm-ID: 442924 [Multi-domain]  Cd Length: 106  Bit Score: 83.41  E-value: 1.45e-22
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 571142490  14 LELTPKEFELLLYLAKNKGRVLTRDQLLSAVWNYDFAGDTRiVDVHISHLREKIEQNTKKPSYIKTIRGLGYKLEEP 90
Cdd:COG3710   24 VRLSPRAFDLLLLLLEHPGRVVSRDELLAAVWPGRVVSDNS-LTQAISRLRKALGDDGLEPRLIRTVPRRGYRLVAP 99
orf27 CHL00148
Ycf27; Reviewed
 12-86 3.56e-20

Ycf27; Reviewed


Pssm-ID: 214376 [Multi-domain]  Cd Length: 240  Bit Score: 80.92  E-value: 3.56e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 571142490  12 NLLELTPKEFELLLYLAKNKGRVLTRDQLLSAVWNYDFAG--DTRIVDVHISHLREKIEQNTKKPSYIKTIRGLGYK 86
Cdd:CHL00148 158 ERIRLTGMEFSLLELLISKSGEIFSRATILKEVWGYTPERhiDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYL 234
PRK10710 PRK10710
DNA-binding transcriptional regulator BaeR; Provisional
 5-88 1.43e-17

DNA-binding transcriptional regulator BaeR; Provisional


Pssm-ID: 182665 [Multi-domain]  Cd Length: 240  Bit Score: 73.95  E-value: 1.43e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571142490   5 YEAYFMENLLELTPKEFELLLYLAKNKGRVLTRDQLLSAVwnYDfagDTRIV-----DVHISHLREKIEQNTKKPSYIKT 79
Cdd:PRK10710 150 FQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL--YD---DYRVVtdrtiDSHIKNLRRKLESLDAEQSFIRA 224


                 ....*....
gi 571142490  80 IRGLGYKLE 88
Cdd:PRK10710 225 VYGVGYRWE 233
PRK09836 PRK09836
DNA-binding transcriptional activator CusR; Provisional
 12-93 3.25e-17

DNA-binding transcriptional activator CusR; Provisional


Pssm-ID: 182102 [Multi-domain]  Cd Length: 227  Bit Score: 72.65  E-value: 3.25e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571142490  12 NLLELTPKEFELLLYLAKNKGRVLTRDQLLSAVWNYDFAGDTRIVDVHISHLREKIEqNTKKPSYIKTIRGLGYKLEEPK 91
Cdd:PRK09836 147 TRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDMNFDSDTNAIDVAVKRLRGKID-NDFEPKLIQTVRGVGYMLEVPD 225


                 ..
gi 571142490  92 GE 93
Cdd:PRK09836 226 GQ 227
PRK11083 PRK11083
DNA-binding response regulator CreB; Provisional
 14-88 7.72e-15

DNA-binding response regulator CreB; Provisional


Pssm-ID: 236838 [Multi-domain]  Cd Length: 228  Bit Score: 66.52  E-value: 7.72e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 571142490  14 LELTPKEFELLLYLAKNKGRVLTRDQLLSAVWNYDFAGDTRIVDVHISHLREKIEQNTKKPSYIKTIRGLGYKLE 88
Cdd:PRK11083 153 LTLTRYEFLLLKTLLLSPGRVFSRQQLMDIVWEDAQDSYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227
PRK10529 PRK10529
DNA-binding transcriptional activator KdpE; Provisional
 14-86 3.17e-14

DNA-binding transcriptional activator KdpE; Provisional


Pssm-ID: 182522 [Multi-domain]  Cd Length: 225  Bit Score: 64.83  E-value: 3.17e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 571142490  14 LELTPKEFELLLYLAKNKGRVLTRDQLLSAVWNYDFAGDTRIVDVHISHLREKIEQNTKKPSYIKTIRGLGYK 86
Cdd:PRK10529 150 VHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYR 222
PRK10701 PRK10701
DNA-binding transcriptional regulator RstA; Provisional
 16-85 2.52e-13

DNA-binding transcriptional regulator RstA; Provisional


Pssm-ID: 236738 [Multi-domain]  Cd Length: 240  Bit Score: 62.73  E-value: 2.52e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571142490  16 LTPKEFELLLYLAKNKGRVLTRDQLLSAVWNYDFAGDTRIVDVHISHLREKIEQNTKKPSYIKTIRGLGY 85
Cdd:PRK10701 162 LSTADFDLLWELATHAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231
PRK11517 PRK11517
DNA-binding response regulator HprR;
16-91 2.72e-13

DNA-binding response regulator HprR;


Pssm-ID: 183172 [Multi-domain]  Cd Length: 223  Bit Score: 62.22  E-value: 2.72e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 571142490  16 LTPKEFELLLYLAKNKGRVLTRDQLLSAVWNYDFAGDTRIVDVHISHLREKIEQNTKKpSYIKTIRGLGYKLEEPK 91
Cdd:PRK11517 148 LTRKEFQLLWLLASRAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPE-KLIATIRGMGYSFVAVK 222
PRK10955 PRK10955
envelope stress response regulator transcription factor CpxR;
2-85 3.25e-13

envelope stress response regulator transcription factor CpxR;


Pssm-ID: 182864 [Multi-domain]  Cd Length: 232  Bit Score: 62.13  E-value: 3.25e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571142490   2 PDFYEAYFMENLLELTPKEFELLLYLAKNKGRVLTRDQLLSAVWNYDFAGDTRIVDVHISHLREKIEQNTKKPSYIKTIR 81
Cdd:PRK10955 143 PGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLR 222


                 ....
gi 571142490  82 GLGY 85
Cdd:PRK10955 223 GRGY 226
PRK10161 PRK10161
phosphate response regulator transcription factor PhoB;
11-87 1.12e-12

phosphate response regulator transcription factor PhoB;


Pssm-ID: 182277 [Multi-domain]  Cd Length: 229  Bit Score: 60.89  E-value: 1.12e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 571142490  11 ENLLELTPKEFELLLYLAKNKGRVLTRDQLLSAVWNYDFAGDTRIVDVHISHLREKIEqNTKKPSYIKTIRGLGYKL 87
Cdd:PRK10161 150 EEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALE-PGGHDRMVQTVRGTGYRF 225
PRK10643 PRK10643
two-component system response regulator PmrA;
14-91 1.50e-12

two-component system response regulator PmrA;


Pssm-ID: 182612 [Multi-domain]  Cd Length: 222  Bit Score: 60.43  E-value: 1.50e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 571142490  14 LELTPKEFELLLYLAKNKGRVLTRDQLLSAVWNYDFAGDTRIVDVHISHLREKIEQNTkkpsyIKTIRGLGYKLEEPK 91
Cdd:PRK10643 148 LILTPKEFALLSRLMLKAGSPVHREILYQDIYNWDDEPSSNTLEVHIHNLRDKVGKDR-----IRTVRGFGYMLVANE 220
PRK10336 PRK10336
two-component system response regulator QseB;
14-90 2.30e-12

two-component system response regulator QseB;


Pssm-ID: 182387 [Multi-domain]  Cd Length: 219  Bit Score: 59.91  E-value: 2.30e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 571142490  14 LELTPKEFELLLYLAKNKGRVLTRDQLLSAVWNYDFAGDTRIVDVHISHLREKIEQNtkkpsYIKTIRGLGYKLEEP 90
Cdd:PRK10336 148 LTLKPKEFALLELLMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGEK 219
ompR PRK09468
osmolarity response regulator; Provisional
 11-85 2.56e-11

osmolarity response regulator; Provisional


Pssm-ID: 181883 [Multi-domain]  Cd Length: 239  Bit Score: 57.29  E-value: 2.56e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 571142490  11 ENLLELTPKEFELLLYLAKNKGRVLTRDQLLSAVWNYDFAGDTRIVDVHISHLREKIEQNTKKPSYIKTIRGLGY 85
Cdd:PRK09468 157 DEPMPLTTGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRLIEEDPAHPRYIQTVWGLGY 231
PRK13856 PRK13856
two-component response regulator VirG; Provisional
 14-88 1.30e-09

two-component response regulator VirG; Provisional


Pssm-ID: 172377 [Multi-domain]  Cd Length: 241  Bit Score: 52.51  E-value: 1.30e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 571142490  14 LELTPKEFELLLYLAKNKGRVLTRDQLLSAVWNYDFAGDTRIVDVHISHLREKIEQNTKKPSYIKTIRGLGYKLE 88
Cdd:PRK13856 154 VKLTAGEFNLLVAFLEKPRDVLSREQLLIASRVREEEVYDRSIDVLILRLRRKLEQDPANPQLIKTARGAGYFFD 228
PRK11173 PRK11173
two-component response regulator; Provisional
 20-86 6.42e-08

two-component response regulator; Provisional


Pssm-ID: 183013 [Multi-domain]  Cd Length: 237  Bit Score: 47.70  E-value: 6.42e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 571142490  20 EFELLLYLAKNKGRVLTRDQLLSAVWNYDFAGDTRIVDVHISHLREKIEQNTKKPSYIKTIRGLGYK 86
Cdd:PRK11173 165 EFRAMLHFCENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231
PRK15479 PRK15479
transcriptional regulator TctD;
6-88 2.16e-07

transcriptional regulator TctD;


Pssm-ID: 185376 [Multi-domain]  Cd Length: 221  Bit Score: 46.25  E-value: 2.16e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571142490   6 EAYFM--ENLLELTPKEFELLLYLAKNKGRVLTRDQLLSAVWNYDFAGDTRIVDVHISHLREKIEQNTKKpsyIKTIRGL 83
Cdd:PRK15479 137 EGYFLlqGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFSLNDEVSPESIELYIHRLRKKLQGSDVR---ITTLRGL 213


                 ....*
gi 571142490  84 GYKLE 88
Cdd:PRK15479 214 GYVLE 218
PRK10153 PRK10153
DNA-binding transcriptional activator CadC; Provisional
 14-90 4.22e-07

DNA-binding transcriptional activator CadC; Provisional


Pssm-ID: 236658 [Multi-domain]  Cd Length: 517  Bit Score: 45.80  E-value: 4.22e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571142490  14 LELTPKEFELLLYLAKNKGRVLTRDQLLSAVWNYDFAGDtRIVDVHISHLReKI-----EQNtkkPSYIKTIRGLGYKLE 88
Cdd:PRK10153  27 VTLEPRLIDLLVFFAQHSGEVLSRDELIDHVWDRAIVTD-HVVTQSISELR-KSlkdgrEDN---PEYIVTVPKRGYKLV 101


                 ..
gi 571142490  89 EP 90
Cdd:PRK10153 102 AP 103
PRK10766 PRK10766
two-component system response regulator TorR;
11-68 3.26e-06

two-component system response regulator TorR;


Pssm-ID: 182711 [Multi-domain]  Cd Length: 221  Bit Score: 43.10  E-value: 3.26e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 571142490  11 ENLLELTPKEFELLLYLAKNKGRVLTRDQLLSAVWNYDFAGDTRIVDVHISHLREKIE 68
Cdd:PRK10766 155 GEPIKLTKAEYELLVAFVTNPGQVLSRERLLRMLSHRVENPNDRTIDVLIRRLRHKLN 212
PRK10816 PRK10816
two-component system response regulator PhoP;
11-88 4.81e-05

two-component system response regulator PhoP;


Pssm-ID: 182755 [Multi-domain]  Cd Length: 223  Bit Score: 39.72  E-value: 4.81e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 571142490  11 ENLLELTPKEFELLLYLAKNKGRVLTRDQLLSAVWNYDFAGDTRIVDVHISHLREKIeQNTKKPSYIKTIRGLGYKLE 88
Cdd:PRK10816 145 DEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKI-QAQYPQEVITTVRGQGYRFD 221
PRK12370 PRK12370
HilA/EilA family virulence transcriptional regulator;
9-90 1.58e-04

HilA/EilA family virulence transcriptional regulator;


Pssm-ID: 237080 [Multi-domain]  Cd Length: 553  Bit Score: 38.68  E-value: 1.58e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571142490   9 FMENLLELTPKEFELLLYLAKNKGRVLTRDQLLSAVWNYDFAGDTRIVDVhISHLReKIEQNTKKPSYIKTIRGLGYKLE 88
Cdd:PRK12370  29 RSEKKVNIPPKEYAVLVILLEAAGEIVSKNTLLDQVWGDAEVNEESLTRC-IYALR-RILSEDKEHRYIETLYGQGYRFN 106


                 ..
gi 571142490  89 EP 90
Cdd:PRK12370 107 RP 108
DnrI COG3629
DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain ...
 17-64 2.35e-03

DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain [Transcription];


Pssm-ID: 442847 [Multi-domain]  Cd Length: 244  Bit Score: 35.20  E-value: 2.35e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 571142490  17 TPKEFELLLYLAKNKGRVLTRDQLLSAVWNYDFAGDTR-IVDVHISHLR 64
Cdd:COG3629   23 GPKQRALLAYLALRAGRPVSRDRLADLLWGDDPPASARaNLRTYVSRLR 71
PRK07239 PRK07239
bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
 13-87 4.22e-03

bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated


Pssm-ID: 235981 [Multi-domain]  Cd Length: 381  Bit Score: 34.57  E-value: 4.22e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 571142490  13 LLELTPKEFELLLYLAKNKGRVLTRDQLLSAVWNYdfAGDTRIVDVHISHLREKIeqntKKPSYIKTIRGLGYKL 87
Cdd:PRK07239 304 VKPLSPAPMALLRALAARPGRVVSREDLLAALPGG--GTDEHAVETAVARLRTAL----GDPKLVQTVVKRGYRL 372
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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