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Conserved domains on  [gi|1524918996|dbj|GBF85330|]
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hypothetical protein AsFPU3_2389 [Aphanothece sacrum FPU3]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF6671 super family cl48534
Domain of unknown function (DUF6671); This family of proteins is functionally uncharacterized. ...
76-296 4.10e-79

Domain of unknown function (DUF6671); This family of proteins is functionally uncharacterized. It belongs to the PD-(D/E)XK nuclease superfamily suggesting it has a nuclease function. This family of proteins is found in bacteria. Proteins in this family are typically between 278 and 290 amino acids in length.


The actual alignment was detected with superfamily member pfam20376:

Pssm-ID: 466525  Cd Length: 217  Bit Score: 239.32  E-value: 4.10e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524918996  76 KAQTALEITGETLAIASEGSFMSHPAFPFVSCDREIVLLLDQKHDLEIIGQEISTETNHTHQSIKTLDEALNFAEKTKFP 155
Cdd:pfam20376   1 KCLQAMDLTGIDLAIASEGSFGPHPSLFFAPANEEFICLIDKKNSLEIIAREISLETNFDGQEIISEDELSDFAEKIGFP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524918996 156 DHGLVVMLSPKSIDKnyIYKGINTEnkliETVEKCLKQ--SNNGTIHIETDMRAMFNPTRMKVIEKATQNLIKTIYQQCP 233
Cdd:pfam20376  81 SHGLILKKSKQDPSD--IFKGITSR----EELEKVFEQlkSNYASVYVETDMRAMYNPTRMKVIKKAGEKLIEKILSQCP 154
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1524918996 234 QCYYPGFDVIKRQSGLPCGLCGLATDSILLDIYQCQQCNFSQEKKFPTGIETADPSQCQYCNP 296
Cdd:pfam20376 155 KCHTPGFSVTQAKAGLPCSLCGKPTQSTLSHLLSCQKCNYKEEKMYPNKKNEEDPMYCDYCNP 217
 
Name Accession Description Interval E-value
DUF6671 pfam20376
Domain of unknown function (DUF6671); This family of proteins is functionally uncharacterized. ...
76-296 4.10e-79

Domain of unknown function (DUF6671); This family of proteins is functionally uncharacterized. It belongs to the PD-(D/E)XK nuclease superfamily suggesting it has a nuclease function. This family of proteins is found in bacteria. Proteins in this family are typically between 278 and 290 amino acids in length.


Pssm-ID: 466525  Cd Length: 217  Bit Score: 239.32  E-value: 4.10e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524918996  76 KAQTALEITGETLAIASEGSFMSHPAFPFVSCDREIVLLLDQKHDLEIIGQEISTETNHTHQSIKTLDEALNFAEKTKFP 155
Cdd:pfam20376   1 KCLQAMDLTGIDLAIASEGSFGPHPSLFFAPANEEFICLIDKKNSLEIIAREISLETNFDGQEIISEDELSDFAEKIGFP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524918996 156 DHGLVVMLSPKSIDKnyIYKGINTEnkliETVEKCLKQ--SNNGTIHIETDMRAMFNPTRMKVIEKATQNLIKTIYQQCP 233
Cdd:pfam20376  81 SHGLILKKSKQDPSD--IFKGITSR----EELEKVFEQlkSNYASVYVETDMRAMYNPTRMKVIKKAGEKLIEKILSQCP 154
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1524918996 234 QCYYPGFDVIKRQSGLPCGLCGLATDSILLDIYQCQQCNFSQEKKFPTGIETADPSQCQYCNP 296
Cdd:pfam20376 155 KCHTPGFSVTQAKAGLPCSLCGKPTQSTLSHLLSCQKCNYKEEKMYPNKKNEEDPMYCDYCNP 217
 
Name Accession Description Interval E-value
DUF6671 pfam20376
Domain of unknown function (DUF6671); This family of proteins is functionally uncharacterized. ...
76-296 4.10e-79

Domain of unknown function (DUF6671); This family of proteins is functionally uncharacterized. It belongs to the PD-(D/E)XK nuclease superfamily suggesting it has a nuclease function. This family of proteins is found in bacteria. Proteins in this family are typically between 278 and 290 amino acids in length.


Pssm-ID: 466525  Cd Length: 217  Bit Score: 239.32  E-value: 4.10e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524918996  76 KAQTALEITGETLAIASEGSFMSHPAFPFVSCDREIVLLLDQKHDLEIIGQEISTETNHTHQSIKTLDEALNFAEKTKFP 155
Cdd:pfam20376   1 KCLQAMDLTGIDLAIASEGSFGPHPSLFFAPANEEFICLIDKKNSLEIIAREISLETNFDGQEIISEDELSDFAEKIGFP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1524918996 156 DHGLVVMLSPKSIDKnyIYKGINTEnkliETVEKCLKQ--SNNGTIHIETDMRAMFNPTRMKVIEKATQNLIKTIYQQCP 233
Cdd:pfam20376  81 SHGLILKKSKQDPSD--IFKGITSR----EELEKVFEQlkSNYASVYVETDMRAMYNPTRMKVIKKAGEKLIEKILSQCP 154
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1524918996 234 QCYYPGFDVIKRQSGLPCGLCGLATDSILLDIYQCQQCNFSQEKKFPTGIETADPSQCQYCNP 296
Cdd:pfam20376 155 KCHTPGFSVTQAKAGLPCSLCGKPTQSTLSHLLSCQKCNYKEEKMYPNKKNEEDPMYCDYCNP 217
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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