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Conserved domains on  [gi|1451154433|dbj|GBZ34880|]
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phage protein [Staphylococcus aureus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1108 super family cl05843
Protein of unknown function (DUF1108); This family consists of several bacterial proteins from ...
 1-83 3.35e-38

Protein of unknown function (DUF1108); This family consists of several bacterial proteins from Staphylococcus aureus as well as a number of phage proteins. The function of this family is unknown.


The actual alignment was detected with superfamily member pfam06531:

Pssm-ID: 368958  Cd Length: 84  Bit Score: 122.31  E-value: 3.35e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1451154433  1 MYYKIGDVCQKVINVDGFDFKLAVKKQDYSILVNVLDLEDRFIDGINITDENDLYTALDILNQSIYEWIEENADDYDRLI 80
Cdd:pfam06531  1 MYYKIGDICNKIINFDGFDFKLAVKKQDDGILINIKDLEDRFIDGFHIIDENDLYIALDALNDSINEWIEENTDEQDKLI 80


                 ...
gi 1451154433 81 NLV 83
Cdd:pfam06531 81 NLV 83
 
Name Accession Description Interval E-value
DUF1108 pfam06531
Protein of unknown function (DUF1108); This family consists of several bacterial proteins from ...
 1-83 3.35e-38

Protein of unknown function (DUF1108); This family consists of several bacterial proteins from Staphylococcus aureus as well as a number of phage proteins. The function of this family is unknown.


Pssm-ID: 368958  Cd Length: 84  Bit Score: 122.31  E-value: 3.35e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1451154433  1 MYYKIGDVCQKVINVDGFDFKLAVKKQDYSILVNVLDLEDRFIDGINITDENDLYTALDILNQSIYEWIEENADDYDRLI 80
Cdd:pfam06531  1 MYYKIGDICNKIINFDGFDFKLAVKKQDDGILINIKDLEDRFIDGFHIIDENDLYIALDALNDSINEWIEENTDEQDKLI 80


                 ...
gi 1451154433 81 NLV 83
Cdd:pfam06531 81 NLV 83
 
Name Accession Description Interval E-value
DUF1108 pfam06531
Protein of unknown function (DUF1108); This family consists of several bacterial proteins from ...
 1-83 3.35e-38

Protein of unknown function (DUF1108); This family consists of several bacterial proteins from Staphylococcus aureus as well as a number of phage proteins. The function of this family is unknown.


Pssm-ID: 368958  Cd Length: 84  Bit Score: 122.31  E-value: 3.35e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1451154433  1 MYYKIGDVCQKVINVDGFDFKLAVKKQDYSILVNVLDLEDRFIDGINITDENDLYTALDILNQSIYEWIEENADDYDRLI 80
Cdd:pfam06531  1 MYYKIGDICNKIINFDGFDFKLAVKKQDDGILINIKDLEDRFIDGFHIIDENDLYIALDALNDSINEWIEENTDEQDKLI 80


                 ...
gi 1451154433 81 NLV 83
Cdd:pfam06531 81 NLV 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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