NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1619464506|dbj|GCQ33136|]
View 

transposase [Escherichia coli]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DDE_Tnp_IS1 super family cl44371
IS1 transposase; Transposase proteins are necessary for efficient DNA transposition. This ...
 1-66 1.71e-34

IS1 transposase; Transposase proteins are necessary for efficient DNA transposition. This family represents bacterial IS1 transposases.


The actual alignment was detected with superfamily member pfam03400:

Pssm-ID: 281403  Cd Length: 131  Bit Score: 115.07  E-value: 1.71e-34
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1619464506   1 MLTTDEWGSYARELPKEKHLTGKIFTQHIERNNLTLRTRIKRLARRTICFSRSVELHEKVIGAFIE 66
Cdd:pfam03400  61 ILMSDDWGLYERELKGDKHLIGKIFTQRIERHNLNLRQHIARLARKSICFSKSVEIHDKVIGHFIE 126
 
Name Accession Description Interval E-value
DDE_Tnp_IS1 pfam03400
IS1 transposase; Transposase proteins are necessary for efficient DNA transposition. This ...
 1-66 1.71e-34

IS1 transposase; Transposase proteins are necessary for efficient DNA transposition. This family represents bacterial IS1 transposases.


Pssm-ID: 281403  Cd Length: 131  Bit Score: 115.07  E-value: 1.71e-34
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1619464506   1 MLTTDEWGSYARELPKEKHLTGKIFTQHIERNNLTLRTRIKRLARRTICFSRSVELHEKVIGAFIE 66
Cdd:pfam03400  61 ILMSDDWGLYERELKGDKHLIGKIFTQRIERHNLNLRQHIARLARKSICFSKSVEIHDKVIGHFIE 126
InsB COG1662
Transposase and inactivated derivatives, IS1 family [Mobilome: prophages, transposons];
1-70 2.96e-31

Transposase and inactivated derivatives, IS1 family [Mobilome: prophages, transposons];


Pssm-ID: 441268 [Multi-domain]  Cd Length: 193  Bit Score: 108.63  E-value: 2.96e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1619464506   1 MLTTDEWGSYARELPKEKHLTGKIFTQHIERNNLTLRTRIKRLARRTICFSRSVELHEKVIGAFIENICS 70
Cdd:COG1662   120 VIYTDGWKAYASLIPEKRHVVSKGYTNHIERNNLTLRHRLKRLVRKTICFSKSLEMHDKAIKLFFHYYNF 189
transpos_IS1 NF033558
IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family ...
 1-46 1.34e-20

IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family elements usually through a translational frameshift mechanism.


Pssm-ID: 468085 [Multi-domain]  Cd Length: 199  Bit Score: 81.55  E-value: 1.34e-20
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1619464506   1 MLTTDEWGSYARELPKEKHLTGKIFTQHIERNNLTLRTRIKRLARR 46
Cdd:NF033558  154 FYCTDHWKVYAEFLPDEKHLVSKGETQRIERENLTLRHRLARLVRK 199
 
Name Accession Description Interval E-value
DDE_Tnp_IS1 pfam03400
IS1 transposase; Transposase proteins are necessary for efficient DNA transposition. This ...
 1-66 1.71e-34

IS1 transposase; Transposase proteins are necessary for efficient DNA transposition. This family represents bacterial IS1 transposases.


Pssm-ID: 281403  Cd Length: 131  Bit Score: 115.07  E-value: 1.71e-34
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1619464506   1 MLTTDEWGSYARELPKEKHLTGKIFTQHIERNNLTLRTRIKRLARRTICFSRSVELHEKVIGAFIE 66
Cdd:pfam03400  61 ILMSDDWGLYERELKGDKHLIGKIFTQRIERHNLNLRQHIARLARKSICFSKSVEIHDKVIGHFIE 126
InsB COG1662
Transposase and inactivated derivatives, IS1 family [Mobilome: prophages, transposons];
1-70 2.96e-31

Transposase and inactivated derivatives, IS1 family [Mobilome: prophages, transposons];


Pssm-ID: 441268 [Multi-domain]  Cd Length: 193  Bit Score: 108.63  E-value: 2.96e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1619464506   1 MLTTDEWGSYARELPKEKHLTGKIFTQHIERNNLTLRTRIKRLARRTICFSRSVELHEKVIGAFIENICS 70
Cdd:COG1662   120 VIYTDGWKAYASLIPEKRHVVSKGYTNHIERNNLTLRHRLKRLVRKTICFSKSLEMHDKAIKLFFHYYNF 189
transpos_IS1 NF033558
IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family ...
 1-46 1.34e-20

IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family elements usually through a translational frameshift mechanism.


Pssm-ID: 468085 [Multi-domain]  Cd Length: 199  Bit Score: 81.55  E-value: 1.34e-20
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1619464506   1 MLTTDEWGSYARELPKEKHLTGKIFTQHIERNNLTLRTRIKRLARR 46
Cdd:NF033558  154 FYCTDHWKVYAEFLPDEKHLVSKGETQRIERENLTLRHRLARLVRK 199
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH