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Conserved domains on  [gi|1681549883|dbj|GEB24884|]
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hypothetical protein BAU01nite_36170 [Brevibacterium aurantiacum]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
membrane_GPGG NF040511
GPGG-motif small membrane protein; Members of this family are small membrane proteins, nearly ...
 1-47 1.33e-11

GPGG-motif small membrane protein; Members of this family are small membrane proteins, nearly all between 47 and 49 residues in length and very well conserved.


:

Pssm-ID: 439729  Cd Length: 47  Bit Score: 52.20  E-value: 1.33e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 1681549883  1 MAIILWIIAALLVISGIFAIFRKQIVWGIILIVIGCLVGPGGVSIFT 47
Cdd:NF040511   1 MATILWIIAVILVIAGIVALVRGQLLWGIVLIVVGLLVGPGGVSIFT 47
 
Name Accession Description Interval E-value
membrane_GPGG NF040511
GPGG-motif small membrane protein; Members of this family are small membrane proteins, nearly ...
 1-47 1.33e-11

GPGG-motif small membrane protein; Members of this family are small membrane proteins, nearly all between 47 and 49 residues in length and very well conserved.


Pssm-ID: 439729  Cd Length: 47  Bit Score: 52.20  E-value: 1.33e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 1681549883  1 MAIILWIIAALLVISGIFAIFRKQIVWGIILIVIGCLVGPGGVSIFT 47
Cdd:NF040511   1 MATILWIIAVILVIAGIVALVRGQLLWGIVLIVVGLLVGPGGVSIFT 47
 
Name Accession Description Interval E-value
membrane_GPGG NF040511
GPGG-motif small membrane protein; Members of this family are small membrane proteins, nearly ...
 1-47 1.33e-11

GPGG-motif small membrane protein; Members of this family are small membrane proteins, nearly all between 47 and 49 residues in length and very well conserved.


Pssm-ID: 439729  Cd Length: 47  Bit Score: 52.20  E-value: 1.33e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 1681549883  1 MAIILWIIAALLVISGIFAIFRKQIVWGIILIVIGCLVGPGGVSIFT 47
Cdd:NF040511   1 MATILWIIAVILVIAGIVALVRGQLLWGIVLIVVGLLVGPGGVSIFT 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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