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Conserved domains on  [gi|2319937390|dbj|GHU29514|]
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flagellar biosynthetic protein FliP [Spirochaetia bacterium]

Protein Classification

flagellar type III secretion system pore protein FliP( domain architecture ID 10003557)

flagellar type III secretion system pore protein FliP plays a role in the flagellum-specific transport system

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
43-268 2.14e-111

Flagellar biosynthesis protein FliP [Cell motility];


:

Pssm-ID: 440949  Cd Length: 249  Bit Score: 320.91  E-value: 2.14e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390  43 PGVPFVDLTIRNPQSGQEVAFSLQLLLLITVISLAPSIIILVTSFLRISIVLDFIKRALSLQQVPPGQVLMGIALFLTVF 122
Cdd:COG1338    25 PGLPSLSLTLGGAGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLSFLRQALGTQQTPPNQVLIGLALFLTFF 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390 123 VMWPTFQTIYTNAFKPLADGEISVETAYREAEGPLRIFMYRQMqgHPENIRLFMSMRGLDRPETLADVPTYVLIPAFILN 202
Cdd:COG1338   105 VMAPVFDQIYDDALQPYLAGEITQEEALERASEPLREFMLKQT--REKDLALFADLAGEPPPETPEDVPLRVLIPAFVIS 182

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2319937390 203 ELTVAFKIGILLFVPFIVIDMVVASALMSMGMIMLPPVMISMPFKLILFILVDGWSLLTGQIMRSF 268
Cdd:COG1338   183 ELKTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVLVDGWNLLVGSLVRSF 248
 
Name Accession Description Interval E-value
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
43-268 2.14e-111

Flagellar biosynthesis protein FliP [Cell motility];


Pssm-ID: 440949  Cd Length: 249  Bit Score: 320.91  E-value: 2.14e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390  43 PGVPFVDLTIRNPQSGQEVAFSLQLLLLITVISLAPSIIILVTSFLRISIVLDFIKRALSLQQVPPGQVLMGIALFLTVF 122
Cdd:COG1338    25 PGLPSLSLTLGGAGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLSFLRQALGTQQTPPNQVLIGLALFLTFF 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390 123 VMWPTFQTIYTNAFKPLADGEISVETAYREAEGPLRIFMYRQMqgHPENIRLFMSMRGLDRPETLADVPTYVLIPAFILN 202
Cdd:COG1338   105 VMAPVFDQIYDDALQPYLAGEITQEEALERASEPLREFMLKQT--REKDLALFADLAGEPPPETPEDVPLRVLIPAFVIS 182

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2319937390 203 ELTVAFKIGILLFVPFIVIDMVVASALMSMGMIMLPPVMISMPFKLILFILVDGWSLLTGQIMRSF 268
Cdd:COG1338   183 ELKTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVLVDGWNLLVGSLVRSF 248
fliP PRK05699
flagellar biosynthesis protein FliP; Reviewed
 39-268 2.15e-100

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 235566  Cd Length: 245  Bit Score: 293.25  E-value: 2.15e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390  39 PATPPGVPFVDLtIRNPQSGQEVAFSLQLLLLITVISLAPSIIILVTSFLRISIVLDFIKRALSLQQVPPGQVLMGIALF 118
Cdd:PRK05699   18 AAAAAPLPGLNL-LPGANGGQEYSLSLQLLLLLTVLSLAPAILLMMTSFTRIIIVLSLLRQALGTQQTPPNQVLIGLALF 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390 119 LTVFVMWPTFQTIYTNAFKPLADGEISVETAYREAEGPLRIFMYRqmQGHPENIRLFMSMRGLDrPETLADVPTYVLIPA 198
Cdd:PRK05699   97 LTFFIMSPVFDKIYDDAIQPYLDEKITLEEALERAAAPLREFMLK--QTREKDLALFAKLAGEP-PKTPEDVPLSVLVPA 173

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390 199 FILNELTVAFKIGILLFVPFIVIDMVVASALMSMGMIMLPPVMISMPFKLILFILVDGWSLLTGQIMRSF 268
Cdd:PRK05699  174 FVLSELKTAFQIGFLIFLPFLIIDLVVASVLMSMGMMMLPPVIISLPFKLLLFVLVDGWNLLVGSLVQSF 243
FliP pfam00813
FliP family;
71-264 2.57e-96

FliP family;


Pssm-ID: 425882  Cd Length: 191  Bit Score: 280.84  E-value: 2.57e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390  71 ITVISLAPSIIILVTSFLRISIVLDFIKRALSLQQVPPGQVLMGIALFLTVFVMWPTFQTIYTNAFKPLADGEISVETAY 150
Cdd:pfam00813   1 LTVLSLAPAILIMMTSFTRIVIVLSFLRNALGTQQTPPNQVLIGLALFLTFFIMAPVFQQIYEDALQPYLAGEITQEEAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390 151 REAEGPLRIFMYRQMqgHPENIRLFMSMRGLdRPETLADVPTYVLIPAFILNELTVAFKIGILLFVPFIVIDMVVASALM 230
Cdd:pfam00813  81 ERASEPLREFMLKQT--REKDLALFLDLAGQ-WPETAEDVPLTVLIPAFVISELKTAFQIGFLIYLPFLVIDLVVASVLM 157

                         170       180       190
                  ....*....|....*....|....*....|....
gi 2319937390 231 SMGMIMLPPVMISMPFKLILFILVDGWSLLTGQI 264
Cdd:pfam00813 158 SMGMMMLPPVTISLPFKLLLFVLVDGWTLLVGSL 191
fliP TIGR01103
flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis ...
 70-268 2.98e-86

flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis protein fliP, which is one of the genes in motility locus on the bacterial chromosome that is involved in structure and function of bacterial flagellum. It was demonstrated that mutants in fliP locus were non-flagellated and non-motile, while revertants were flagellated and motile. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 211625  Cd Length: 197  Bit Score: 255.38  E-value: 2.98e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390  70 LITVISLAPSIIILVTSFLRISIVLDFIKRALSLQQVPPGQVLMGIALFLTVFVMWPTFQTIYTNAFKPLADGEISVETA 149
Cdd:TIGR01103   1 LLTVLSLAPAILIMMTSFTRIVIVLSILRSALGLQSTPPNQVLLGLALFLTFFVMAPTFDRIYDDAYQPLLDNQISEQEA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390 150 YREAEGPLRIFMYRQMQghPENIRLFMSMRGLDRPETLADVPTYVLIPAFILNELTVAFKIGILLFVPFIVIDMVVASAL 229
Cdd:TIGR01103  81 YQKAEEPLREFMLRQTR--DKDLALFMRLAKIPKPQTPEAVPLRVLVPAFMLSELKTAFQIGFLIFIPFLIIDLVVASVL 158

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 2319937390 230 MSMGMIMLPPVMISMPFKLILFILVDGWSLLTGQIMRSF 268
Cdd:TIGR01103 159 MAMGMMMLPPVMISLPFKLMLFVLVDGWNLLVGSLVQSF 197
 
Name Accession Description Interval E-value
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
43-268 2.14e-111

Flagellar biosynthesis protein FliP [Cell motility];


Pssm-ID: 440949  Cd Length: 249  Bit Score: 320.91  E-value: 2.14e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390  43 PGVPFVDLTIRNPQSGQEVAFSLQLLLLITVISLAPSIIILVTSFLRISIVLDFIKRALSLQQVPPGQVLMGIALFLTVF 122
Cdd:COG1338    25 PGLPSLSLTLGGAGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLSFLRQALGTQQTPPNQVLIGLALFLTFF 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390 123 VMWPTFQTIYTNAFKPLADGEISVETAYREAEGPLRIFMYRQMqgHPENIRLFMSMRGLDRPETLADVPTYVLIPAFILN 202
Cdd:COG1338   105 VMAPVFDQIYDDALQPYLAGEITQEEALERASEPLREFMLKQT--REKDLALFADLAGEPPPETPEDVPLRVLIPAFVIS 182

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2319937390 203 ELTVAFKIGILLFVPFIVIDMVVASALMSMGMIMLPPVMISMPFKLILFILVDGWSLLTGQIMRSF 268
Cdd:COG1338   183 ELKTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVLVDGWNLLVGSLVRSF 248
fliP PRK05699
flagellar biosynthesis protein FliP; Reviewed
 39-268 2.15e-100

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 235566  Cd Length: 245  Bit Score: 293.25  E-value: 2.15e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390  39 PATPPGVPFVDLtIRNPQSGQEVAFSLQLLLLITVISLAPSIIILVTSFLRISIVLDFIKRALSLQQVPPGQVLMGIALF 118
Cdd:PRK05699   18 AAAAAPLPGLNL-LPGANGGQEYSLSLQLLLLLTVLSLAPAILLMMTSFTRIIIVLSLLRQALGTQQTPPNQVLIGLALF 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390 119 LTVFVMWPTFQTIYTNAFKPLADGEISVETAYREAEGPLRIFMYRqmQGHPENIRLFMSMRGLDrPETLADVPTYVLIPA 198
Cdd:PRK05699   97 LTFFIMSPVFDKIYDDAIQPYLDEKITLEEALERAAAPLREFMLK--QTREKDLALFAKLAGEP-PKTPEDVPLSVLVPA 173

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390 199 FILNELTVAFKIGILLFVPFIVIDMVVASALMSMGMIMLPPVMISMPFKLILFILVDGWSLLTGQIMRSF 268
Cdd:PRK05699  174 FVLSELKTAFQIGFLIFLPFLIIDLVVASVLMSMGMMMLPPVIISLPFKLLLFVLVDGWNLLVGSLVQSF 243
FliP pfam00813
FliP family;
71-264 2.57e-96

FliP family;


Pssm-ID: 425882  Cd Length: 191  Bit Score: 280.84  E-value: 2.57e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390  71 ITVISLAPSIIILVTSFLRISIVLDFIKRALSLQQVPPGQVLMGIALFLTVFVMWPTFQTIYTNAFKPLADGEISVETAY 150
Cdd:pfam00813   1 LTVLSLAPAILIMMTSFTRIVIVLSFLRNALGTQQTPPNQVLIGLALFLTFFIMAPVFQQIYEDALQPYLAGEITQEEAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390 151 REAEGPLRIFMYRQMqgHPENIRLFMSMRGLdRPETLADVPTYVLIPAFILNELTVAFKIGILLFVPFIVIDMVVASALM 230
Cdd:pfam00813  81 ERASEPLREFMLKQT--REKDLALFLDLAGQ-WPETAEDVPLTVLIPAFVISELKTAFQIGFLIYLPFLVIDLVVASVLM 157

                         170       180       190
                  ....*....|....*....|....*....|....
gi 2319937390 231 SMGMIMLPPVMISMPFKLILFILVDGWSLLTGQI 264
Cdd:pfam00813 158 SMGMMMLPPVTISLPFKLLLFVLVDGWTLLVGSL 191
fliP TIGR01103
flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis ...
 70-268 2.98e-86

flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis protein fliP, which is one of the genes in motility locus on the bacterial chromosome that is involved in structure and function of bacterial flagellum. It was demonstrated that mutants in fliP locus were non-flagellated and non-motile, while revertants were flagellated and motile. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 211625  Cd Length: 197  Bit Score: 255.38  E-value: 2.98e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390  70 LITVISLAPSIIILVTSFLRISIVLDFIKRALSLQQVPPGQVLMGIALFLTVFVMWPTFQTIYTNAFKPLADGEISVETA 149
Cdd:TIGR01103   1 LLTVLSLAPAILIMMTSFTRIVIVLSILRSALGLQSTPPNQVLLGLALFLTFFVMAPTFDRIYDDAYQPLLDNQISEQEA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390 150 YREAEGPLRIFMYRQMQghPENIRLFMSMRGLDRPETLADVPTYVLIPAFILNELTVAFKIGILLFVPFIVIDMVVASAL 229
Cdd:TIGR01103  81 YQKAEEPLREFMLRQTR--DKDLALFMRLAKIPKPQTPEAVPLRVLVPAFMLSELKTAFQIGFLIFIPFLIIDLVVASVL 158

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 2319937390 230 MSMGMIMLPPVMISMPFKLILFILVDGWSLLTGQIMRSF 268
Cdd:TIGR01103 159 MAMGMMMLPPVMISLPFKLMLFVLVDGWNLLVGSLVQSF 197
EscR COG4790
Type III secretory pathway, EscR/YscR component [Intracellular trafficking, secretion, and ...
 65-269 5.10e-65

Type III secretory pathway, EscR/YscR component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443819  Cd Length: 216  Bit Score: 201.94  E-value: 5.10e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390  65 LQLLLLITVISLAPSIIILVTSFLRISIVLDFIKRALSLQQVPPGQVLMGIALFLTVFVMWPTFQTIYTNAFK-PLADGE 143
Cdd:COG4790     8 LSLILLLALLSLLPFLVVMGTSFLKISVVLSLLRNALGVQQVPPNMVLNGIALILTLFVMAPVGQEIYDRLQAaPVDFSS 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390 144 I-SVETAYREAEGPLRIFMYRQmqGHPENIRLFMS----MRGLDRPETLADVPTYVLIPAFILNELTVAFKIGILLFVPF 218
Cdd:COG4790    88 SaSVLEAVDAGLEPLRDFLKKN--TDPEERAFFLDaaqrLWPEEYAAKLKPDDLLVLLPAFVLSELTSAFKIGFLLYLPF 165

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2319937390 219 IVIDMVVASALMSMGMIMLPPVMISMPFKLILFILVDGWSLLTGQIMRSFV 269
Cdd:COG4790   166 VVIDLVVSNILLALGMMMVSPMTISLPFKLLLFVLVDGWTLLLHGLVLSYR 216
PRK12797 PRK12797
type III secretion system protein YscR; Provisional
 65-265 1.10e-54

type III secretion system protein YscR; Provisional


Pssm-ID: 237210  Cd Length: 213  Bit Score: 175.44  E-value: 1.10e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390  65 LQLLLLITVISLAPSIIILVTSFLRISIVLDFIKRALSLQQVPPGQVLMGIALFLTVFVMWPTFQTIYTNAFKPLADGE- 143
Cdd:PRK12797    8 LQLIILLALLSLLPLIAVMGTSFLKISVVLSLLRNALGVQQVPPNMALYGLALILTLFVMAPVGLAIQDRLQQPPLSLQd 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390 144 -ISVETAYREAEGPLRIFMYRQMQghPENIRLFMSMRGLDRPETLADVPT----YVLIPAFILNELTVAFKIGILLFVPF 218
Cdd:PRK12797   88 pDSVLQLLDAALAPLRDFLKKHTD--ERERTFFVRSAQRIWPEEAADSLKkddlLILIPAFTLSELTRAFEIGFLLYLPF 165

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 2319937390 219 IVIDMVVASALMSMGMIMLPPVMISMPFKLILFILVDGWSLLTGQIM 265
Cdd:PRK12797  166 IVIDLIISNILLAMGMMMVSPTTISLPFKLLLFVLVDGWSRLLHGLV 212
PRK12430 PRK12430
putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional
 58-268 4.65e-51

putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional


Pssm-ID: 237101 [Multi-domain]  Cd Length: 379  Bit Score: 171.22  E-value: 4.65e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390  58 GQEVAFSLQLLLLITVISLAPSIIILVTSFLRISIVLDFIKRALSLQQVPPGQVLMGIALFLTVFVMWPTFQTIYTNAFK 137
Cdd:PRK12430  169 SQTWSVPVQTLVFLTSLTFLPAFLLMMTSFTRIVIVFGLLRNALGTPYAPPNQILLGLALFLTFFIMSPTFDKIYKDAYL 248

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390 138 PLADGEISVETAYREAEGPLRIFMYRQMQGhpENIRLFMSMRGLDRPETLADVPTYVLIPAFILNELTVAFKIGILLFVP 217
Cdd:PRK12430  249 PFSQEKINMDDAILKGAMPLKKFMLNQTRT--PDLELFSKLAHISSYKNKNEIPMRILLPSFITSELKTAFQIGFTIFIP 326

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2319937390 218 FIVIDMVVASALMSMGMIMLPPVMISMPFKLILFILVDGWSLLTGQIMRSF 268
Cdd:PRK12430  327 FLIIDLVVASVLMALGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLAHSF 377
fliP PRK12783
flagellar biosynthesis protein FliP; Reviewed
 44-268 5.46e-49

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 171720  Cd Length: 255  Bit Score: 162.35  E-value: 5.46e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390  44 GVPFVDlTIRNPQSGQEVAFSLQLLLLITVISLAPSIIILVTSFLRISIVLDFIKRALSLQQVPPGQVLMGIALFLTVFV 123
Cdd:PRK12783   31 GVPGLD-ALLPPGNGAASGRIIQLVALLTVLSLAPGLLVMVTSFTRFAVALSFLRSGLGLQSTPANLFLVSLALFMTFYV 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390 124 MWPTFQTIYTNAFKPLADGEISVETAYREAEGPLRIFMYRQMQghPENIRLFMSM--RGLDRPETLADVPTYVLIPAFIL 201
Cdd:PRK12783  110 MAPTFDRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVR--PKDLQTFTDLasRSFPKAEAGEKIDLRILIPAFMI 187

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2319937390 202 NELTVAFKIGILLFVPFIVIDMVVASALMSMGMIMLPPVMISMPFKLILFILVDGWSLLTGQIMRSF 268
Cdd:PRK12783  188 SELRRGFEIGFLIVLPFLVIDMIVATIVMSMGMMMLPPTVISLPFKVLFFVLIDGWNLLVSGLVRSF 254
yscR TIGR01102
type III secretion apparatus protein, YscR/HrcR family; This model identifies the generic ...
 67-261 4.78e-48

type III secretion apparatus protein, YscR/HrcR family; This model identifies the generic virulence translocation proteins in bacteria. It derives its name:'Yop' from Yersinia enterocolitica species, where this virulence protein was identified. In bacterial pathogenesis, Yop effector proteins are translocated into the eukaryotic cells. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130172  Cd Length: 202  Bit Score: 158.27  E-value: 4.78e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390  67 LLLLITVISLAPSIIILVTSFLRISIVLDFIKRALSLQQVPPGQVLMGIALFLTVFVMWPTFQTIYTNAFKPLADGE--I 144
Cdd:TIGR01102   1 LIAVLAALSLLPFIIVVGTSFLKISVVLGILRNALGVQQVPPNMALYGIALILSMFVMAPVGHQAQDRFHQEPVAYSniD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390 145 SVETAYREAEGPLRIFMYRQMQghPENIRLFMSMRGLDRPETLADVPT----YVLIPAFILNELTVAFKIGILLFVPFIV 220
Cdd:TIGR01102  81 FLQKSLDAGLAPYREFLKKNTD--EDEVAFFERSTQKMWPKEMADRLKkdslLILLPAFTLSELTAAFKIGFLLYLPFIV 158

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 2319937390 221 IDMVVASALMSMGMIMLPPVMISMPFKLILFILVDGWSLLT 261
Cdd:TIGR01102 159 IDLIVSNILLALGMMMVSPMTISLPFKLLLFVLIDGWSRLL 199
PRK09617 PRK09617
type III secretion system protein; Reviewed
 69-268 8.00e-44

type III secretion system protein; Reviewed


Pssm-ID: 236593  Cd Length: 243  Bit Score: 148.74  E-value: 8.00e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390  69 LLITVISLAPSIIILVTSFLRISIVLDFIKRALSLQQVPPGQVLMGIALFLTVFVMWPTFQTIYTNAFKPL--------- 139
Cdd:PRK09617   30 VILIFLALSPFLVMLLTSFLKIIIVLSLLRNALGVQQTPPSQVLNGIALILSIYIMFPTGVAMYNDAQKGIesnavprsl 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390 140 --ADGEISVETAYREAEGPLRIFMYRQmqGHPENIRLFMSMRGLDRPETLADVPT----YVLIPAFILNELTVAFKIGIL 213
Cdd:PRK09617  110 fsAEGAETVFVAANKSKEPLRSFLIKN--TPKPQIASFYKISQKTFPPEIRDALTpsdfMIIIPAFIMGQLKNAFEIGVL 187

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2319937390 214 LFVPFIVIDMVVASALMSMGMIMLPPVMISMPFKLILFILVDGWSLLTGQIMRSF 268
Cdd:PRK09617  188 IYLPFFVIDLVTANVLLAMGMMMLSPLSISLPLKLLLVVMVDGWTLLLEGLMISF 242
spaP PRK12796
EscR/YscR/HrcR family type III secretion system export apparatus protein;
64-261 2.97e-39

EscR/YscR/HrcR family type III secretion system export apparatus protein;


Pssm-ID: 237209  Cd Length: 221  Bit Score: 136.26  E-value: 2.97e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390  64 SLQLLLLITVISLAPSIIILVTSFLRISIVLDFIKRALSLQQVPPGQVLMGIALFLTVFVMWPTFQTIYTNAF-KPLADG 142
Cdd:PRK12796    4 DISLIALLSFFTLLPFIIASGTCFIKFSIVFVMVRNALGLQQVPSNMTLNGIALLLSMFVMMPVIQDIYVYFQnEPVDFN 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2319937390 143 EI-SVETAYREAEGPLRIFMYRQmqGHPENIRLFMSMR----GLDRPET----LADVPTYVLIPAFILNELTVAFKIGIL 213
Cdd:PRK12796   84 NIaSVVKFVDEGLGGYRDYLIKY--SDPELVRFFERAQkkrsYGDEAEAndhdKDEISLFSLLPAYALSEIKSAFKIGFY 161

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 2319937390 214 LFVPFIVIDMVVASALMSMGMIMLPPVMISMPFKLILFILVDGWSLLT 261
Cdd:PRK12796  162 LYLPFVVVDLVVSSVLLALGMMMMSPVTISVPIKLILFVAMDGWTLLS 209
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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