NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2320059203|dbj|GHV89606|]
View 

hypothetical protein AGMMS50268_01090 [Spirochaetia bacterium]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 12134568)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

CATH:  3.80.10.10
Gene Ontology:  GO:0005515
PubMed:  11751054|7583641|14747988
SCOP:  4003523

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
LRR_5 pfam13306
BspA type Leucine rich repeat region (6 copies); This family includes a number of leucine rich ...
 32-147 5.33e-29

BspA type Leucine rich repeat region (6 copies); This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis.


:

Pssm-ID: 463839 [Multi-domain]  Cd Length: 127  Bit Score: 104.93  E-value: 5.33e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2320059203  32 CFANNELTELVFPDSLSTIADGAFS-CNLLKSVKLPKDLEGIGSRAFMNNCLESIVIPNSVRTIGAEAFRSNS-LKVIKL 109
Cdd:pfam13306   7 AFYNCSLTSITIPSSLTSIGEYAFSnCTSLKSITLPSSLTSIGSYAFYNCSLTSITIPSSLTSIGEYAFSNCSnLKSITL 86

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 2320059203 110 SKYLDGIGNGVFMDNKLESIVLPAGLKWISDTAFKGNP 147
Cdd:pfam13306  87 PSNLTSIGSYAFSNCSLKSITIPSSVTTIGSYAFSNCS 124
 
Name Accession Description Interval E-value
LRR_5 pfam13306
BspA type Leucine rich repeat region (6 copies); This family includes a number of leucine rich ...
 32-147 5.33e-29

BspA type Leucine rich repeat region (6 copies); This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis.


Pssm-ID: 463839 [Multi-domain]  Cd Length: 127  Bit Score: 104.93  E-value: 5.33e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2320059203  32 CFANNELTELVFPDSLSTIADGAFS-CNLLKSVKLPKDLEGIGSRAFMNNCLESIVIPNSVRTIGAEAFRSNS-LKVIKL 109
Cdd:pfam13306   7 AFYNCSLTSITIPSSLTSIGEYAFSnCTSLKSITLPSSLTSIGSYAFYNCSLTSITIPSSLTSIGEYAFSNCSnLKSITL 86

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 2320059203 110 SKYLDGIGNGVFMDNKLESIVLPAGLKWISDTAFKGNP 147
Cdd:pfam13306  87 PSNLTSIGSYAFSNCSLKSITIPSSVTTIGSYAFSNCS 124
 
Name Accession Description Interval E-value
LRR_5 pfam13306
BspA type Leucine rich repeat region (6 copies); This family includes a number of leucine rich ...
 32-147 5.33e-29

BspA type Leucine rich repeat region (6 copies); This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis.


Pssm-ID: 463839 [Multi-domain]  Cd Length: 127  Bit Score: 104.93  E-value: 5.33e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2320059203  32 CFANNELTELVFPDSLSTIADGAFS-CNLLKSVKLPKDLEGIGSRAFMNNCLESIVIPNSVRTIGAEAFRSNS-LKVIKL 109
Cdd:pfam13306   7 AFYNCSLTSITIPSSLTSIGEYAFSnCTSLKSITLPSSLTSIGSYAFYNCSLTSITIPSSLTSIGEYAFSNCSnLKSITL 86

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 2320059203 110 SKYLDGIGNGVFMDNKLESIVLPAGLKWISDTAFKGNP 147
Cdd:pfam13306  87 PSNLTSIGSYAFSNCSLKSITIPSSVTTIGSYAFSNCS 124
LRR_5 pfam13306
BspA type Leucine rich repeat region (6 copies); This family includes a number of leucine rich ...
 48-158 1.51e-21

BspA type Leucine rich repeat region (6 copies); This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis.


Pssm-ID: 463839 [Multi-domain]  Cd Length: 127  Bit Score: 85.67  E-value: 1.51e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2320059203  48 STIADGAFSCNLLKSVKLPKDLEGIGSRAFMN-NCLESIVIPNSVRTIGAEAFRSNSLKVIKLSKYLDGIGNGVFMDN-K 125
Cdd:pfam13306   1 TSIGSYAFYNCSLTSITIPSSLTSIGEYAFSNcTSLKSITLPSSLTSIGSYAFYNCSLTSITIPSSLTSIGEYAFSNCsN 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2320059203 126 LESIVLPAGLKWISDTAFKGNPIVSITIGENLE 158
Cdd:pfam13306  81 LKSITLPSNLTSIGSYAFSNCSLKSITIPSSVT 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH