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Conserved domains on  [gi|2315541366|dbj|GIV44938|]
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MAG: hypothetical protein KatS3mg035_2061 [Bacteroidia bacterium]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cu2_monooxygen super family cl03089
Copper type II ascorbate-dependent monooxygenase, N-terminal domain; The N and C-terminal ...
 152-256 2.68e-07

Copper type II ascorbate-dependent monooxygenase, N-terminal domain; The N and C-terminal domains of members of this family adopt the same PNGase F-like fold.


The actual alignment was detected with superfamily member pfam01082:

Pssm-ID: 460053  Cd Length: 130  Bit Score: 49.56  E-value: 2.68e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315541366 152 SNDDVY--RYFAIPtNFSTNKFISEWE--ILPGNPEIVHHVLIFV-DPTGNALIDEANDPNPGYYKPTNSAFSDYKLVGV 226
Cdd:pfam01082  12 AKDTTYwcTVFKLP-DLTKKHHIIRFEpvIQPGNEGLVHHMLLYEcEGDPNEPSPGYGGDCYSADNMPDDLDPCSSVIAA 90

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2315541366 227 WAPGQLKFTAPAGFGYKLEPNAA---IVLQIHY 256
Cdd:pfam01082  91 WAVGGGGFTYPEEVGLPIGGDGDpryVMLEVHY 123
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
34-111 1.59e-04

Cytochrome C oxidase, cbb3-type, subunit III;


:

Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 40.08  E-value: 1.59e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2315541366  34 SHCTKCHHPGGIGPMSFMDYTQTANYAQAILNMVEGasnkthhlsteMPPWPPDntyqkyaydptLTPQEIQAIRDWV 111
Cdd:pfam13442  12 ANCASCHGTGGAGPSLAGRALPPEALVDIIRNGKGA-----------MPAFGGD-----------LSDEELEALAAYL 67
Por_Secre_tail TIGR04183
Por secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, ...
 462-534 2.32e-04

Por secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.


:

Pssm-ID: 275036 [Multi-domain]  Cd Length: 72  Bit Score: 39.70  E-value: 2.32e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2315541366 462 VFPNPVQKVATVLTSSPME--KLELWDYQGRVLgrWNTQNLKSFEMDLSWIPSGCYFFNVYYSNHTQeSVQFLKQ 534
Cdd:TIGR04183   1 IYPNPAKGTLIIILLSSSGkvKVEIYDLSGKLV--KKTTLNNSNSIDLSNLSSGVYIVKITTGNGTI-TKKIIKK 72
 
Name Accession Description Interval E-value
Cu2_monooxygen pfam01082
Copper type II ascorbate-dependent monooxygenase, N-terminal domain; The N and C-terminal ...
 152-256 2.68e-07

Copper type II ascorbate-dependent monooxygenase, N-terminal domain; The N and C-terminal domains of members of this family adopt the same PNGase F-like fold.


Pssm-ID: 460053  Cd Length: 130  Bit Score: 49.56  E-value: 2.68e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315541366 152 SNDDVY--RYFAIPtNFSTNKFISEWE--ILPGNPEIVHHVLIFV-DPTGNALIDEANDPNPGYYKPTNSAFSDYKLVGV 226
Cdd:pfam01082  12 AKDTTYwcTVFKLP-DLTKKHHIIRFEpvIQPGNEGLVHHMLLYEcEGDPNEPSPGYGGDCYSADNMPDDLDPCSSVIAA 90

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2315541366 227 WAPGQLKFTAPAGFGYKLEPNAA---IVLQIHY 256
Cdd:pfam01082  91 WAVGGGGFTYPEEVGLPIGGDGDpryVMLEVHY 123
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
34-111 1.59e-04

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 40.08  E-value: 1.59e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2315541366  34 SHCTKCHHPGGIGPMSFMDYTQTANYAQAILNMVEGasnkthhlsteMPPWPPDntyqkyaydptLTPQEIQAIRDWV 111
Cdd:pfam13442  12 ANCASCHGTGGAGPSLAGRALPPEALVDIIRNGKGA-----------MPAFGGD-----------LSDEELEALAAYL 67
Por_Secre_tail TIGR04183
Por secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, ...
 462-534 2.32e-04

Por secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.


Pssm-ID: 275036 [Multi-domain]  Cd Length: 72  Bit Score: 39.70  E-value: 2.32e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2315541366 462 VFPNPVQKVATVLTSSPME--KLELWDYQGRVLgrWNTQNLKSFEMDLSWIPSGCYFFNVYYSNHTQeSVQFLKQ 534
Cdd:TIGR04183   1 IYPNPAKGTLIIILLSSSGkvKVEIYDLSGKLV--KKTTLNNSNSIDLSNLSSGVYIVKITTGNGTI-TKKIIKK 72
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
34-111 3.90e-03

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 38.39  E-value: 3.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315541366  34 SHCTKCHHP---GGIGPM-SFMDYTQTANYAQAILNMVegasnKTHHLSTEMPPWppdntyqkyayDPTLTPQEIQAIRD 109
Cdd:COG2010    98 QNCAACHGAdgkGGLGAApNLTDDALYGGDPEALVETI-----LNGRPGGAMPAF-----------GGQLSDEEIAALAA 161


                  ..
gi 2315541366 110 WV 111
Cdd:COG2010   162 YL 163
 
Name Accession Description Interval E-value
Cu2_monooxygen pfam01082
Copper type II ascorbate-dependent monooxygenase, N-terminal domain; The N and C-terminal ...
 152-256 2.68e-07

Copper type II ascorbate-dependent monooxygenase, N-terminal domain; The N and C-terminal domains of members of this family adopt the same PNGase F-like fold.


Pssm-ID: 460053  Cd Length: 130  Bit Score: 49.56  E-value: 2.68e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315541366 152 SNDDVY--RYFAIPtNFSTNKFISEWE--ILPGNPEIVHHVLIFV-DPTGNALIDEANDPNPGYYKPTNSAFSDYKLVGV 226
Cdd:pfam01082  12 AKDTTYwcTVFKLP-DLTKKHHIIRFEpvIQPGNEGLVHHMLLYEcEGDPNEPSPGYGGDCYSADNMPDDLDPCSSVIAA 90

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2315541366 227 WAPGQLKFTAPAGFGYKLEPNAA---IVLQIHY 256
Cdd:pfam01082  91 WAVGGGGFTYPEEVGLPIGGDGDpryVMLEVHY 123
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
34-111 1.59e-04

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 40.08  E-value: 1.59e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2315541366  34 SHCTKCHHPGGIGPMSFMDYTQTANYAQAILNMVEGasnkthhlsteMPPWPPDntyqkyaydptLTPQEIQAIRDWV 111
Cdd:pfam13442  12 ANCASCHGTGGAGPSLAGRALPPEALVDIIRNGKGA-----------MPAFGGD-----------LSDEELEALAAYL 67
Por_Secre_tail TIGR04183
Por secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, ...
 462-534 2.32e-04

Por secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.


Pssm-ID: 275036 [Multi-domain]  Cd Length: 72  Bit Score: 39.70  E-value: 2.32e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2315541366 462 VFPNPVQKVATVLTSSPME--KLELWDYQGRVLgrWNTQNLKSFEMDLSWIPSGCYFFNVYYSNHTQeSVQFLKQ 534
Cdd:TIGR04183   1 IYPNPAKGTLIIILLSSSGkvKVEIYDLSGKLV--KKTTLNNSNSIDLSNLSSGVYIVKITTGNGTI-TKKIIKK 72
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
34-111 3.90e-03

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 38.39  E-value: 3.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315541366  34 SHCTKCHHP---GGIGPM-SFMDYTQTANYAQAILNMVegasnKTHHLSTEMPPWppdntyqkyayDPTLTPQEIQAIRD 109
Cdd:COG2010    98 QNCAACHGAdgkGGLGAApNLTDDALYGGDPEALVETI-----LNGRPGGAMPAF-----------GGQLSDEEIAALAA 161


                  ..
gi 2315541366 110 WV 111
Cdd:COG2010   162 YL 163
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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