NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2315541371|dbj|GIV44943|]
View 

MAG: hypothetical protein KatS3mg035_2066 [Bacteroidia bacterium]

Protein Classification

PaaB family protein( domain architecture ID 10007418)

PaaB family protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PaaB COG3460
1,2-phenylacetyl-CoA epoxidase, PaaB subunit [Secondary metabolites biosynthesis, transport ...
 26-111 6.55e-38

1,2-phenylacetyl-CoA epoxidase, PaaB subunit [Secondary metabolites biosynthesis, transport and catabolism];


:

Pssm-ID: 442683  Cd Length: 98  Bit Score: 124.29  E-value: 6.55e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315541371  26 DMDQWQTYEVFHQRNRGEQHVHVGCVHAPSPELALLFAKEQYARRSKCANLWVVKTADITPSDYEDED-IFIPAVDKTYR 104
Cdd:COG3460     5 SATEWPLWEVFVRSKPGLPHRHVGSLHAPDAEMALQNARDVFTRREEGVSIWVVPSDAITASSPEEKDaFFDPAADKVYR 84


                  ....*..
gi 2315541371 105 EAYGYKV 111
Cdd:COG3460    85 HPTFYEV 91
 
Name Accession Description Interval E-value
PaaB COG3460
1,2-phenylacetyl-CoA epoxidase, PaaB subunit [Secondary metabolites biosynthesis, transport ...
 26-111 6.55e-38

1,2-phenylacetyl-CoA epoxidase, PaaB subunit [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 442683  Cd Length: 98  Bit Score: 124.29  E-value: 6.55e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315541371  26 DMDQWQTYEVFHQRNRGEQHVHVGCVHAPSPELALLFAKEQYARRSKCANLWVVKTADITPSDYEDED-IFIPAVDKTYR 104
Cdd:COG3460     5 SATEWPLWEVFVRSKPGLPHRHVGSLHAPDAEMALQNARDVFTRREEGVSIWVVPSDAITASSPEEKDaFFDPAADKVYR 84


                  ....*..
gi 2315541371 105 EAYGYKV 111
Cdd:COG3460    85 HPTFYEV 91
PaaB pfam06243
Phenylacetic acid degradation B; Phenylacetic acid degradation protein B (PaaB) is thought to ...
 29-111 1.59e-36

Phenylacetic acid degradation B; Phenylacetic acid degradation protein B (PaaB) is thought to be part of a multicomponent oxygenase involved in phenylacetyl-CoA hydroxylation.


Pssm-ID: 428844  Cd Length: 88  Bit Score: 120.45  E-value: 1.59e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315541371  29 QWQTYEVFHQRNRGEQHVHVGCVHAPSPELALLFAKEQYARRSKCANLWVVKTADITPSDYED-EDIFIPAVDKTYREAY 107
Cdd:pfam06243   1 EWPLWEVFVRSKRGLPHQHVGSLHAPDAEMALQNARDVYTRRNEGVSIWVVPSSDITASDPEEkEPFFEPADDKVYRHPT 80


                  ....
gi 2315541371 108 GYKV 111
Cdd:pfam06243  81 FYGV 84
PA_CoA_Oxy2 TIGR02157
phenylacetate-CoA oxygenase, PaaH subunit; Phenylacetate-CoA oxygenase is comprised of a five ...
 30-111 2.32e-20

phenylacetate-CoA oxygenase, PaaH subunit; Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. [Energy metabolism, Other]


Pssm-ID: 274002  Cd Length: 90  Bit Score: 79.52  E-value: 2.32e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315541371  30 WQTYEVFHQRNRGEQHVHVGCVHAPSPELALLFAKEQYARRSKCANLWVVKTADITPSDYED-EDIFIPAVDKTYREAYG 108
Cdd:TIGR02157   1 WPLYEVFVRSKSGLPHQHVGSLHAPDEEMALMMARDNYTRREEGVSIWVVKASHIVASTPDErEEFFDPAEDKVYRHPTF 80


                  ...
gi 2315541371 109 YKV 111
Cdd:TIGR02157  81 YGI 83
 
Name Accession Description Interval E-value
PaaB COG3460
1,2-phenylacetyl-CoA epoxidase, PaaB subunit [Secondary metabolites biosynthesis, transport ...
 26-111 6.55e-38

1,2-phenylacetyl-CoA epoxidase, PaaB subunit [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 442683  Cd Length: 98  Bit Score: 124.29  E-value: 6.55e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315541371  26 DMDQWQTYEVFHQRNRGEQHVHVGCVHAPSPELALLFAKEQYARRSKCANLWVVKTADITPSDYEDED-IFIPAVDKTYR 104
Cdd:COG3460     5 SATEWPLWEVFVRSKPGLPHRHVGSLHAPDAEMALQNARDVFTRREEGVSIWVVPSDAITASSPEEKDaFFDPAADKVYR 84


                  ....*..
gi 2315541371 105 EAYGYKV 111
Cdd:COG3460    85 HPTFYEV 91
PaaB pfam06243
Phenylacetic acid degradation B; Phenylacetic acid degradation protein B (PaaB) is thought to ...
 29-111 1.59e-36

Phenylacetic acid degradation B; Phenylacetic acid degradation protein B (PaaB) is thought to be part of a multicomponent oxygenase involved in phenylacetyl-CoA hydroxylation.


Pssm-ID: 428844  Cd Length: 88  Bit Score: 120.45  E-value: 1.59e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315541371  29 QWQTYEVFHQRNRGEQHVHVGCVHAPSPELALLFAKEQYARRSKCANLWVVKTADITPSDYED-EDIFIPAVDKTYREAY 107
Cdd:pfam06243   1 EWPLWEVFVRSKRGLPHQHVGSLHAPDAEMALQNARDVYTRRNEGVSIWVVPSSDITASDPEEkEPFFEPADDKVYRHPT 80


                  ....
gi 2315541371 108 GYKV 111
Cdd:pfam06243  81 FYGV 84
PA_CoA_Oxy2 TIGR02157
phenylacetate-CoA oxygenase, PaaH subunit; Phenylacetate-CoA oxygenase is comprised of a five ...
 30-111 2.32e-20

phenylacetate-CoA oxygenase, PaaH subunit; Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. [Energy metabolism, Other]


Pssm-ID: 274002  Cd Length: 90  Bit Score: 79.52  E-value: 2.32e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315541371  30 WQTYEVFHQRNRGEQHVHVGCVHAPSPELALLFAKEQYARRSKCANLWVVKTADITPSDYED-EDIFIPAVDKTYREAYG 108
Cdd:TIGR02157   1 WPLYEVFVRSKSGLPHQHVGSLHAPDEEMALMMARDNYTRREEGVSIWVVKASHIVASTPDErEEFFDPAEDKVYRHPTF 80


                  ...
gi 2315541371 109 YKV 111
Cdd:TIGR02157  81 YGI 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH