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Conserved domains on  [gi|2315625604|dbj|GIX08250|]
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MAG: hypothetical protein KatS3mg115_2653 [Candidatus Poribacteria bacterium]

Protein Classification

TRL-like family protein( domain architecture ID 10586944)

TRL-like family protein similar to Helicobacter pylori protein trl (transfer RNA-associated locus)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TRL pfam13146
TRL-like protein family; This family includes the TRL protein that is found in a locus that ...
 34-110 2.79e-28

TRL-like protein family; This family includes the TRL protein that is found in a locus that includes several tRNAs. The function of this protein is not known. The proteins in this family usually have a lipoprotein attachment site at their N-terminus.


:

Pssm-ID: 432993  Cd Length: 77  Bit Score: 97.67  E-value: 2.79e-28
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2315625604  34 AGLYVDMKGPVAVTGNGQSSKVGRASATSFLGLIATGDASIQTAAASAGITRIHHVDFEAKSILGIVATYTTVVYGE 110
Cdd:pfam13146   1 GGLYTDVTFPVAGTSNAGGSKVGKACAQSYLGLVSTGDASIEAAAKNGGITKIASVDYETKSILGIYGKYCTIVTGE 77
 
Name Accession Description Interval E-value
TRL pfam13146
TRL-like protein family; This family includes the TRL protein that is found in a locus that ...
 34-110 2.79e-28

TRL-like protein family; This family includes the TRL protein that is found in a locus that includes several tRNAs. The function of this protein is not known. The proteins in this family usually have a lipoprotein attachment site at their N-terminus.


Pssm-ID: 432993  Cd Length: 77  Bit Score: 97.67  E-value: 2.79e-28
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2315625604  34 AGLYVDMKGPVAVTGNGQSSKVGRASATSFLGLIATGDASIQTAAASAGITRIHHVDFEAKSILGIVATYTTVVYGE 110
Cdd:pfam13146   1 GGLYTDVTFPVAGTSNAGGSKVGKACAQSYLGLVSTGDASIEAAAKNGGITKIASVDYETKSILGIYGKYCTIVTGE 77
 
Name Accession Description Interval E-value
TRL pfam13146
TRL-like protein family; This family includes the TRL protein that is found in a locus that ...
 34-110 2.79e-28

TRL-like protein family; This family includes the TRL protein that is found in a locus that includes several tRNAs. The function of this protein is not known. The proteins in this family usually have a lipoprotein attachment site at their N-terminus.


Pssm-ID: 432993  Cd Length: 77  Bit Score: 97.67  E-value: 2.79e-28
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2315625604  34 AGLYVDMKGPVAVTGNGQSSKVGRASATSFLGLIATGDASIQTAAASAGITRIHHVDFEAKSILGIVATYTTVVYGE 110
Cdd:pfam13146   1 GGLYTDVTFPVAGTSNAGGSKVGKACAQSYLGLVSTGDASIEAAAKNGGITKIASVDYETKSILGIYGKYCTIVTGE 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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