|
Name |
Accession |
Description |
Interval |
E-value |
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
289-591 |
0e+00 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 551.55 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 289 FFARLKRSLVRTKENIGSGFFGLFRG-KKIDDDLFEELETQLLTADLGVDTTSRIIEGLVQHADRKQLKDAEALYGLLKQ 367
Cdd:COG0552 1 FFERLKEGLSKTRSGLGEKLKSLFSGkKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 368 DMGAMLAKVEQPLVIdTGKKPYVILMVGVNGVGKTTTIGKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVI 447
Cdd:COG0552 81 ELLEILDPVDKPLAI-EEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVPVI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 448 AQHTGADSASVIFDAIEAARSRGADVLIADTAGRLQNKSNLMEELKKVVRVMKKLDEEAPHEIMLTLDAGTGQNALSQAK 527
Cdd:COG0552 160 AQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDPDAPHEVLLVLDATTGQNALSQAK 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2067382820 528 LFSEAVGLTGITLTKLDGTAKGGVIFAVADKFQIPIRYIGVGEGIDDLRPFVANDFIEALFSRD 591
Cdd:COG0552 240 VFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFGEE 303
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
283-592 |
0e+00 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 544.69 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 283 KPQREGFFARLKRSLVRTKENIGSGFFGLFRGKKIDDDLFEELETQLLTADLGVDTTSRIIEGLVQHADRKQLKDAEALY 362
Cdd:PRK10416 10 KEKKEGWFERLKKGLSKTRENFGEGINGLFAKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKDPEELK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 363 GLLKQDMGAMLAKVEQPLVIdTGKKPYVILMVGVNGVGKTTTIGKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRN 442
Cdd:PRK10416 90 ELLKEELAEILEPVEKPLNI-EEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERV 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 443 NIPVIAQHTGADSASVIFDAIEAARSRGADVLIADTAGRLQNKSNLMEELKKVVRVMKKLDEEAPHEIMLTLDAGTGQNA 522
Cdd:PRK10416 169 GVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNA 248
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 523 LSQAKLFSEAVGLTGITLTKLDGTAKGGVIFAVADKFQIPIRYIGVGEGIDDLRPFVANDFIEALFSRDE 592
Cdd:PRK10416 249 LSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLGGED 318
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
316-588 |
6.94e-139 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 404.33 E-value: 6.94e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 316 KIDDDLFEELETQLLTADLGVDTTSRIIEGLVQHADRKQLKDAEALYGLLKQDMGAMLAKVE----QPLVIDTGKKPYVI 391
Cdd:TIGR00064 1 KDDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLlkntDLELIVEENKPNVI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 392 LMVGVNGVGKTTTIGKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIEAARSRGA 471
Cdd:TIGR00064 81 LFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 472 DVLIADTAGRLQNKSNLMEELKKVVRVMKKLDEEAPHEIMLTLDAGTGQNALSQAKLFSEAVGLTGITLTKLDGTAKGGV 551
Cdd:TIGR00064 161 DVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGI 240
|
250 260 270
....*....|....*....|....*....|....*..
gi 2067382820 552 IFAVADKFQIPIRYIGVGEGIDDLRPFVANDFIEALF 588
Cdd:TIGR00064 241 ILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
389-587 |
4.96e-116 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 343.01 E-value: 4.96e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 389 YVILMVGVNGVGKTTTIGKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIEAARS 468
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 469 RGADVLIADTAGRLQNKSNLMEELKKVVRVMKKLDEEAPHEIMLTLDAGTGQNALSQAKLFSEAVGLTGITLTKLDGTAK 548
Cdd:cd17874 81 RGIDVVLIDTAGRLHTKKNLMEELKKIKRVIKKKDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAK 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 2067382820 549 GGVIFAVADKFQIPIRYIGVGEGIDDLRPFVANDFIEAL 587
Cdd:cd17874 161 GGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
388-588 |
2.59e-100 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 302.79 E-value: 2.59e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 388 PYVILMVGVNGVGKTTTIGKLAKQFQAEG-KSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIEAA 466
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGgKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 467 RSRGADVLIADTAGRLQNKSNLMEELKKVVRVMKkldeeaPHEIMLTLDAGTGQNALSQAKLFSEAVGLTGITLTKLDGT 546
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIK------PDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGT 154
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2067382820 547 AKGGVIFAVADKFQIPIRYIGVGEGIDDLRPFVANDFIEALF 588
Cdd:smart00962 155 AKGGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLL 196
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
390-587 |
3.94e-97 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 294.45 E-value: 3.94e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 390 VILMVGVNGVGKTTTIGKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIEAARSR 469
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKAE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 470 GADVLIADTAGRLQNKSNLMEELKKVVRVMKkldeeaPHEIMLTLDAGTGQNALSQAKLFSEAVGLTGITLTKLDGTAKG 549
Cdd:pfam00448 82 NYDVVLVDTAGRLQNDKNLMDELKKIKRVVA------PDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKG 155
|
170 180 190
....*....|....*....|....*....|....*...
gi 2067382820 550 GVIFAVADKFQIPIRYIGVGEGIDDLRPFVANDFIEAL 587
Cdd:pfam00448 156 GAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
389-587 |
1.35e-91 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 280.03 E-value: 1.35e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 389 YVILMVGVNGVGKTTTIGKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIEAARS 468
Cdd:cd03115 1 NVILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 469 RGADVLIADTAGRLQNKSNLMEELKKVVRVmkkldeEAPHEIMLTLDAGTGQNALSQAKLFSEAVGLTGITLTKLDGTAK 548
Cdd:cd03115 81 EGYDVLLVDTAGRLQKDEPLMEELKKVKEV------ESPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAK 154
|
170 180 190
....*....|....*....|....*....|....*....
gi 2067382820 549 GGVIFAVADKFQIPIRYIGVGEGIDDLRPFVANDFIEAL 587
Cdd:cd03115 155 GGAALSIVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
301-589 |
3.53e-85 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 268.76 E-value: 3.53e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 301 KENIGSGFFGLFRGKKID----DDLFEELETQLLTADLGVDTTSRIIEGLV-----QHADRKQ-----LKDA--EALYGL 364
Cdd:PRK14974 42 EKKEKPGFFDKAKITEIKekdiEDLLEELELELLESDVALEVAEEILESLKeklvgKKVKRGEdveeiVKNAlkEALLEV 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 365 LKQDmgamlAKVEQPLVIDTGKKPYVILMVGVNGVGKTTTIGKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNI 444
Cdd:PRK14974 122 LSVG-----DLFDLIEEIKSKGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGV 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 445 PVIAQHTGADSASVIFDAIEAARSRGADVLIADTAGRLQNKSNLMEELKKVVRVMKkldeeaPHEIMLTLDAGTGQNALS 524
Cdd:PRK14974 197 KVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTK------PDLVIFVGDALAGNDAVE 270
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2067382820 525 QAKLFSEAVGLTGITLTKLDGTAKGGVIFAVADKFQIPIRYIGVGEGIDDLRPFVANDFIEALFS 589
Cdd:PRK14974 271 QAREFNEAVGIDGVILTKVDADAKGGAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
371-578 |
3.93e-69 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 229.52 E-value: 3.93e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 371 AMLAKVEQPLVIDtGKKPYVILMVGVNGVGKTTTIGKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQH 450
Cdd:COG0541 84 ELLGGENEELNLA-KKPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVFPEE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 451 TGADSASVIFDAIEAARSRGADVLIADTAGRLQNKSNLMEELKKVVRVMKkldeeaPHEIMLTLDAGTGQNALSQAKLFS 530
Cdd:COG0541 163 DGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVN------PDETLLVVDAMTGQDAVNVAKAFN 236
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2067382820 531 EAVGLTGITLTKLDGTAKGGV---IFAVADKfqiPIRYIGVGEGIDDLRPF 578
Cdd:COG0541 237 EALGLTGVILTKLDGDARGGAalsIRAVTGK---PIKFIGTGEKLDDLEPF 284
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
390-578 |
6.61e-63 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 205.53 E-value: 6.61e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 390 VILMVGVNGVGKTTTIGKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIEAARSR 469
Cdd:cd18539 2 VILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKEE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 470 GADVLIADTAGRLQNKSNLMEELKKVVRVMKkldeeaPHEIMLTLDAGTGQNALSQAKLFSEAVGLTGITLTKLDGTAKG 549
Cdd:cd18539 82 GFDVVIVDTAGRLHIDEELMDELKEIKEVLN------PDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARG 155
|
170 180
....*....|....*....|....*....
gi 2067382820 550 GVIFAVADKFQIPIRYIGVGEGIDDLRPF 578
Cdd:cd18539 156 GAALSIRHVTGKPIKFIGVGEKIEDLEPF 184
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
302-584 |
2.57e-57 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 198.51 E-value: 2.57e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 302 ENIGSGFFGLFRGKKIDDDLFEEL--ETQ--LLTADLGVDTTSRIIEGLVQHAdrkqlKDAEALYGLLKQD--------- 368
Cdd:PRK00771 3 ESLRDALKKLAGKSRIDEKTVKEVvkDIQraLLQADVNVKLVKELSKSIKERA-----LEEEPPKGLTPREhvikivyee 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 369 MGAMLAKVEQPLVIDtgKKPYVILMVGVNGVGKTTTIGKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIA 448
Cdd:PRK00771 78 LVKLLGEETEPLVLP--LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYG 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 449 QHTGADSASVIFDAIEAARSrgADVLIADTAGRLQNKSNLMEELKKVVRVMKkldeeaPHEIMLTLDAGTGQNALSQAKL 528
Cdd:PRK00771 156 DPDNKDAVEIAKEGLEKFKK--ADVIIVDTAGRHALEEDLIEEMKEIKEAVK------PDEVLLVIDATIGQQAKNQAKA 227
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 2067382820 529 FSEAVGLTGITLTKLDGTAKGGVIFAVADKFQIPIRYIGVGEGIDDLRPFVANDFI 584
Cdd:PRK00771 228 FHEAVGIGGIIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFI 283
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
389-587 |
6.51e-52 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 176.61 E-value: 6.51e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 389 YVILMVGVNGVGKTTTIGKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIEAARS 468
Cdd:cd17875 1 NVIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 469 RGADVLIADTAGRLQNKSNLMEELKKVVRVMKkldeeaPHEIMLTLDAGTGQNALSQAKLFSEAVGLTGITLTKLDGTAK 548
Cdd:cd17875 81 EKFDIIIVDTSGRHKQEEELFEEMKQISDAVK------PDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAK 154
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2067382820 549 -GGVIFAVAdKFQIPIRYIGVGEGIDDLRPFVANDFIEAL 587
Cdd:cd17875 155 gGGALSAVA-ATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
389-587 |
4.05e-43 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 153.15 E-value: 4.05e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 389 YVILMVGVNGVGKTTTIGKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIEAARS 468
Cdd:cd17876 1 YVIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 469 RGADVLIADTAGRLQNKSNLMEELKKVVRVMKkldeeaPHEIMLTLDAGTGQNALSQAKLFSEAV----------GLTGI 538
Cdd:cd17876 81 QGFDVVLIDTAGRMQNNEPLMRALAKLIKENN------PDLVLFVGEALVGNDAVDQLKKFNQALadyspsdnprLIDGI 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2067382820 539 TLTKLDGTA-KGGVIFAVADKFQIPIRYIGVGEGIDDLRPFVANDFIEAL 587
Cdd:cd17876 155 VLTKFDTIDdKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVNSL 204
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
291-587 |
2.93e-39 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 149.21 E-value: 2.93e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 291 ARLKRSLVRTKENIGSGFFGlfrGKKIDDDLFEELETQLLTADLGVDTTSRIIEGLVQHADRKQLKDAEALYGLLKQDMG 370
Cdd:TIGR01425 3 AQLGSSLVTALRSMSSATVI---DEEVINTMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 371 AMLAKVEQPLV---IDTGKKPYVILMVGVNGVGKTTTIGKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVI 447
Cdd:TIGR01425 80 EELCNLVDPGVeafTPKKGKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFY 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 448 AQHTGADSASVIFDAIEAARSRGADVLIADTAGRLQNKSNLMEELKKVVRVMKkldeeaPHEIMLTLDAGTGQNALSQAK 527
Cdd:TIGR01425 160 GSYEESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIK------PDSIIFVMDGSIGQAAFGQAK 233
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2067382820 528 LFSEAVGLTGITLTKLDGTAK-GGVIFAVADKfQIPIRYIGVGEGIDDLRPFVANDFIEAL 587
Cdd:TIGR01425 234 AFKDSVEVGSVIITKLDGHAKgGGALSAVAAT-KSPIIFIGTGEHVDEFEIFDAEPFVSKL 293
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
319-592 |
1.78e-36 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 139.62 E-value: 1.78e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 319 DDLFEELETQLLTADLGVDTTSRIIEGLVQHADrkqlkdAEALYGLLKQDMGAMLAKVEQPLVIDTGkkpyVILMVGVNG 398
Cdd:COG1419 105 PPELAELLERLLEAGVSPELARELLEKLPEDLS------AEEAWRALLEALARRLPVAEDPLLDEGG----VIALVGPTG 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 399 VGKTTTIGKLAKQF-QAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIfdaieaARSRGADVLIAD 477
Cdd:COG1419 175 VGKTTTIAKLAARFvLRGKKKVALITTDTYRIGAVEQLKTYARILGVPVEVAYDPEELKEAL------ERLRDKDLVLID 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 478 TAGRLQNKSNLMEELKKVVRVMKkldeeaPHEIMLTLDAGT-GQNALSQAKLFSEaVGLTGITLTKLDGTAKGGVIFAVA 556
Cdd:COG1419 249 TAGRSPRDPELIEELKALLDAGP------PIEVYLVLSATTkYEDLKEIVEAFSS-LGLDGLILTKLDETASLGSILNLL 321
|
250 260 270
....*....|....*....|....*....|....*..
gi 2067382820 557 DKFQIPIRYIGVGEGI-DDLRPFVANDFIEALFSRDE 592
Cdd:COG1419 322 IRTGLPLSYITNGQRVpEDIEVADPERLARLLLGGLE 358
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
390-581 |
2.85e-32 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 123.04 E-value: 2.85e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 390 VILMVGVNGVGKTTTIGKLAKQFQAE-GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAqhtgADSASVIFDAIEaaRS 468
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVLKkGKKVALITTDTYRIGAVEQLKTYAEIMGIPVEV----AEDPEDLADALE--RL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 469 RGADVLIADTAGRLQNKSNLMEELKKVvrvmkkLDEEAPHEIMLTLDAGT-GQNALSQAKLFSeAVGLTGITLTKLDGTA 547
Cdd:cd17873 76 SDRDLILIDTAGRSPRDKEQLEELKEL------LGAGEDIEVHLVLSATTkAKDLKEIIERFS-PLGYRGLILTKLDETT 148
|
170 180 190
....*....|....*....|....*....|....*
gi 2067382820 548 KGGVIFAVADKFQIPIRYIGVGEGI-DDLrpFVAN 581
Cdd:cd17873 149 SLGSVLSVLAESQLPVSYVTTGQRVpEDI--EVAS 181
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
313-581 |
7.36e-27 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 113.45 E-value: 7.36e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 313 RGKKIDDDLFEELETQLLTADLGVDTTSRIIEGLVQHADRKQLKDAEALYGLLKQdmgaMLAKVEQPLVIDTGkkpyVIL 392
Cdd:PRK05703 154 RQVERIPPEFAELYKRLKRSGLSPEIAEKLLKLLLEHMPPRERTAWRYLLELLAN----MIPVRVEDILKQGG----VVA 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 393 MVGVNGVGKTTTIGKLAKQFQA--EGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAsvifDAIEAARSRg 470
Cdd:PRK05703 226 LVGPTGVGKTTTLAKLAARYALlyGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELA----KALEQLRDC- 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 471 aDVLIADTAGRLQNKSNLMEELKKVVRvmkklDEEAPHEIMLTLDAGTGQNALSQA-KLFSEaVGLTGITLTKLDGTAKG 549
Cdd:PRK05703 301 -DVILIDTAGRSQRDKRLIEELKALIE-----FSGEPIDVYLVLSATTKYEDLKDIyKHFSR-LPLDGLIFTKLDETSSL 373
|
250 260 270
....*....|....*....|....*....|...
gi 2067382820 550 GVIFAVADKFQIPIRYIGVGEGI-DDLRpfVAN 581
Cdd:PRK05703 374 GSILSLLIESGLPISYLTNGQRVpDDIK--VAN 404
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
341-480 |
3.57e-14 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 73.14 E-value: 3.57e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 341 RIIEGLVQHAdrKQLKDAEALYGLLKQDMGAMLAkvEQPLVIDTGKKPYVILMVGVNGVGKTTTIGKLAKQF--QAEGKS 418
Cdd:TIGR03499 151 ELARELLEKL--PEDADAEDAWRWLREALEGMLP--VKPEEDPILEQGGVIALVGPTGVGKTTTLAKLAARFalEHGKKK 226
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2067382820 419 VMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIfdaieaARSRGADVLIADTAG 480
Cdd:TIGR03499 227 VALITTDTYRIGAVEQLKTYAEILGIPVKVARDPKELREAL------DRLRDKDLILIDTAG 282
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
390-575 |
7.29e-14 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 74.26 E-value: 7.29e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 390 VILMVGVNGVGKTTTIGKLAKQFQAE--GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPViaqHTgADSASVIFDAIEaaR 467
Cdd:PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFAAQhaPRDVALVTTDTQRVGGREQLHSYGRQLGIAV---HE-ADSAESLLDLLE--R 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 468 SRGADVLIADTAGRLQNKSNLMEELK--KVVRVMKKLdeeapheimLTLDAGTGQNALSQAKLFSEAVGLTGITLTKLDG 545
Cdd:PRK12727 426 LRDYKLVLIDTAGMGQRDRALAAQLNwlRAARQVTSL---------LVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDE 496
|
170 180 190
....*....|....*....|....*....|.
gi 2067382820 546 TAKGGVIFAVADKFQIPIRYIGVGEGI-DDL 575
Cdd:PRK12727 497 TGRFGSALSVVVDHQMPITWVTDGQRVpDDL 527
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
375-578 |
2.17e-13 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 72.30 E-value: 2.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 375 KVEQPLVIDTGK-KPYVILMVGVNGVGKTTTIGKLA-KQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAqhtg 452
Cdd:PRK12724 209 SVDSDLFSGTGKnQRKVVFFVGPTGSGKTTSIAKLAaKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYP---- 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 453 adsASVIFDAIEAARSRGADVLIADTAGRLQNKSNLMEELKKVVRVMKKLDEEaphEIMLTLDAGTG-QNALSQAKLFsE 531
Cdd:PRK12724 285 ---VKDIKKFKETLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSV---ENLLVLSSTSSyHHTLTVLKAY-E 357
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2067382820 532 AVGLTGITLTKLDGTAKGGVIFAVADKFQIPIRYIGVGEGIddlrPF 578
Cdd:PRK12724 358 SLNYRRILLTKLDEADFLGSFLELADTYSKSFTYLSVGQEV----PF 400
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
301-373 |
2.51e-13 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 65.27 E-value: 2.51e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2067382820 301 KENIGSGFFGLFRGKKIDDDLFEELETQLLTADLGVDTTSRIIEGLVQHADR---KQLKDAEALYGLLKQDMGAML 373
Cdd:smart00963 2 SKALGKLLGELFLTEKDDEELLEELEEALLEADVGVEVVKEIIERVKEKAKGevlKGLTPKQEVKKILKEELVKIL 77
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
387-513 |
3.04e-13 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 67.40 E-value: 3.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 387 KPYVILMVGVNGVGKTTTIGKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQvwgqrnNIPVIAQHTGADSASVIFDAIEAA 466
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALA 74
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2067382820 467 RSRGADVLIADTAGRLQNKSNLMEELKKVV-RVMKKLDEEAPHEIMLT 513
Cdd:smart00382 75 RKLKPDVLILDEITSLLDAEQEALLLLLEElRLLLLLKSEKNLTVILT 122
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
386-572 |
3.62e-13 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 71.64 E-value: 3.62e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 386 KKPYVILMVGVNGVGKTTTIGKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIEA 465
Cdd:PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 466 ARsrgADVLIADTAGRLQNKSNLMEELkkvVRVMKKLDeeaPHEIMLTLDAGTGQNALSQAKLFSEAVGLTGITLTKLDG 545
Cdd:PRK11889 319 AR---VDYILIDTAGKNYRASETVEEM---IETMGQVE---PDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDE 389
|
170 180
....*....|....*....|....*..
gi 2067382820 546 TAKGGVIFAVADKFQIPIRYIGVGEGI 572
Cdd:PRK11889 390 TASSGELLKIPAVSSAPIVLMTDGQDV 416
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
386-572 |
3.11e-12 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 67.08 E-value: 3.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 386 KKPYVILMVGVNGVGKTTTIGKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIEA 465
Cdd:PRK06731 73 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 466 ARsrgADVLIADTAGRLQNKSNLMEELkkvvrvMKKLDEEAPHEIMLTLDAGTGQNALSQAKLFSEAVGLTGITLTKLDG 545
Cdd:PRK06731 153 AR---VDYILIDTAGKNYRASETVEEM------IETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDE 223
|
170 180
....*....|....*....|....*..
gi 2067382820 546 TAKGGVIFAVADKFQIPIRYIGVGEGI 572
Cdd:PRK06731 224 TASSGELLKIPAVSSAPIVLMTDGQDV 250
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
390-570 |
6.29e-11 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 65.21 E-value: 6.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 390 VILMVGVNGVGKTTTIGKLAKQFQA-EGKS-VMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADsasvIFDAIEAAR 467
Cdd:PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVArEGADqLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAAD----LRFALAALG 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 468 SRgaDVLIADTAGRLQNKSNLMEELKKVVRVmkkldeEAPHEIMLTLdagtgqNALSQAKLFSEAV---------GLTGI 538
Cdd:PRK14723 263 DK--HLVLIDTVGMSQRDRNVSEQIAMLCGV------GRPVRRLLLL------NAASHGDTLNEVVhayrhgageDVDGC 328
|
170 180 190
....*....|....*....|....*....|..
gi 2067382820 539 TLTKLDGTAKGGVIFAVADKFQIPIRYIGVGE 570
Cdd:PRK14723 329 IITKLDEATHLGPALDTVIRHRLPVHYVSTGQ 360
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
390-574 |
1.73e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 63.20 E-value: 1.73e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 390 VILMVGVNGVGKTTTIGKLAKQ--FQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAsvifdaIEAAR 467
Cdd:PRK14722 139 VFALMGPTGVGKTTTTAKLAARcvMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ------LALAE 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 468 SRGADVLIADTAGRLQNKSNLMEELKKVvrvmkkLDEEAPHEIMLTLDAGTGQNALSQA-KLFSEAVG--------LTGI 538
Cdd:PRK14722 213 LRNKHMVLIDTIGMSQRDRTVSDQIAML------HGADTPVQRLLLLNATSHGDTLNEVvQAYRSAAGqpkaalpdLAGC 286
|
170 180 190
....*....|....*....|....*....|....*.
gi 2067382820 539 TLTKLDGTAKGGVIFAVADKFQIPIRYIGVGEGIDD 574
Cdd:PRK14722 287 ILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 322
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
390-577 |
3.14e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 62.45 E-value: 3.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 390 VILMVGVNGVGKTTTIGKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAqhtgADSASVIFDAIE-AARS 468
Cdd:PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV----ATSPAELEEAVQyMTYV 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 469 RGADVLIADTAGRlqnksNLMEElKKVVRVMKKLDEEAPHEIMLTLDAGTGQNALSQAKLFSEAVGLTGITLTKLDGTAK 548
Cdd:PRK12726 284 NCVDHILIDTVGR-----NYLAE-ESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTR 357
|
170 180 190
....*....|....*....|....*....|.
gi 2067382820 549 GGVIFAVADKFQIPIRYIGVGEGIDD--LRP 577
Cdd:PRK12726 358 IGDLYTVMQETNLPVLYMTDGQNITEniFRP 388
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
302-367 |
6.55e-09 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 52.85 E-value: 6.55e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2067382820 302 ENIGSGFFGLFRGKKIDDDLFEE----LETQLLTADLGVDTTSRIIEGLVQHA-DRKQLKDAEALYGLLKQ 367
Cdd:pfam02881 3 EKLSSLFKGLRGKGKIDEEDLEEalkeLEEALLEADVGVEVVKKIIERLREKAvGEKKLKPPQEVKKILKE 73
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
387-572 |
2.78e-08 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 56.06 E-value: 2.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 387 KPYVILMVGVNGVGKTTTIGKLAKQF----QAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDa 462
Cdd:PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYginsDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ- 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 463 ieaarSRGADVLIADTAGRLQNKSNLMEELKKVVRVMKKlDEEAPHEIMLTLDAGTGQNALSQAKLFseavGLTGITLTK 542
Cdd:PRK12723 252 -----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGR-DAEFHLAVSSTTKTSDVKEIFHQFSPF----SYKTVIFTK 321
|
170 180 190
....*....|....*....|....*....|
gi 2067382820 543 LDGTAKGGVIFAVADKFQIPIRYIGVGEGI 572
Cdd:PRK12723 322 LDETTCVGNLISLIYEMRKEVSYVTDGQIV 351
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
390-581 |
2.07e-05 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 47.25 E-value: 2.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 390 VILMVGVNGVGKTTTIGKLAKQ--FQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPViaqHTGADSASVifdAIEAAR 467
Cdd:PRK14721 193 VYALIGPTGVGKTTTTAKLAARavIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV---RSIKDIADL---QLMLHE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 468 SRGADVLIADTAGRLQNKSNLMEElkkvVRVMKKLDEEAPHeiMLTLDAGTGQNALSQAKLFSEAVGLTGITLTKLDGTA 547
Cdd:PRK14721 267 LRGKHMVLIDTVGMSQRDQMLAEQ----IAMLSQCGTQVKH--LLLLNATSSGDTLDEVISAYQGHGIHGCIITKVDEAA 340
|
170 180 190
....*....|....*....|....*....|....*
gi 2067382820 548 KGGVIFAVADKFQIPIRYIGVGEGI-DDLRpfVAN 581
Cdd:PRK14721 341 SLGIALDAVIRRKLVLHYVTNGQKVpEDLH--EAN 373
|
|
| Zeta_toxin |
pfam06414 |
Zeta toxin; This family consists of several bacterial zeta toxin proteins. Zeta toxin is ... |
383-494 |
1.38e-03 |
|
Zeta toxin; This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Pssm-ID: 428926 Cd Length: 192 Bit Score: 40.04 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 383 DTGKKPYVILMVGVNGVGKTTTIGKLAKQFQAEGKSVMLaAGDTFRAA---AVEQLQVWGQRNnipviAQHTGADSASVI 459
Cdd:pfam06414 6 TSQERPKAILLGGQPGAGKTELARALLDELGRQGNVVRI-DPDDFRELhphYRELQAADPKTA-----SEYTQPDASRWV 79
|
90 100 110
....*....|....*....|....*....|....*
gi 2067382820 460 FDAIEAARSRGADVLIADTAGRLQNKSNLMEELKK 494
Cdd:pfam06414 80 EKLLQHAIENGYNIILEGTLRSPDVAKKIARALKA 114
|
|
| DEXSc_RecD-like |
cd17933 |
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1. ... |
390-432 |
3.04e-03 |
|
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350691 [Multi-domain] Cd Length: 155 Bit Score: 38.69 E-value: 3.04e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 2067382820 390 VILMVGVNGVGKTTTIGKLAKQFQAEGKSVMLAAgDTFRAAAV 432
Cdd:cd17933 14 VSVLTGGAGTGKTTTLKALLAALEAEGKRVVLAA-PTGKAAKR 55
|
|
| RecD |
COG0507 |
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ... |
390-477 |
3.36e-03 |
|
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440273 [Multi-domain] Cd Length: 514 Bit Score: 40.35 E-value: 3.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 390 VILMVGVNGVGKTTTIGKLAKQFQAEGKSVMLAA--GdtfRAAAV--EQLQVWGQrnnipVIAQHTGADSASVIFDAIEA 465
Cdd:COG0507 142 VSVLTGGAGTGKTTTLRALLAALEALGLRVALAAptG---KAAKRlsESTGIEAR-----TIHRLLGLRPDSGRFRHNRD 213
|
90
....*....|..
gi 2067382820 466 ARSRGADVLIAD 477
Cdd:COG0507 214 NPLTPADLLVVD 225
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
390-569 |
4.24e-03 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 39.95 E-value: 4.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 390 VILMVGVNGVGKTTTIGKLAKQFQAE-GKS-VMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAieaar 467
Cdd:PRK06995 258 VFALMGPTGVGKTTTTAKLAARCVMRhGASkVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSEL----- 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382820 468 sRGADVLIADTAG---RLQNKSNLMEELKKVVRVMKKLdeeapheimLTLdagtgqNALSQAKLFSEAV------GLTGI 538
Cdd:PRK06995 333 -RNKHIVLIDTIGmsqRDRMVSEQIAMLHGAGAPVKRL---------LLL------NATSHGDTLNEVVqayrgpGLAGC 396
|
170 180 190
....*....|....*....|....*....|.
gi 2067382820 539 TLTKLDGTAKGGVIFAVADKFQIPIRYIGVG 569
Cdd:PRK06995 397 ILTKLDEAASLGGALDVVIRYKLPLHYVSNG 427
|
|
| PRK05541 |
PRK05541 |
adenylylsulfate kinase; Provisional |
383-428 |
4.87e-03 |
|
adenylylsulfate kinase; Provisional
Pssm-ID: 235498 Cd Length: 176 Bit Score: 38.50 E-value: 4.87e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 2067382820 383 DTGKKPYVILMVGVNGVGKTTTIGKLAKQFQAEGKSVMLAAGDTFR 428
Cdd:PRK05541 2 QMKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELR 47
|
|
| TMPK |
cd01672 |
Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the ... |
395-448 |
5.69e-03 |
|
Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Pssm-ID: 238835 Cd Length: 200 Bit Score: 38.40 E-value: 5.69e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 2067382820 395 GVNGVGKTTTIGKLAKQFQAEGKSVML--AAGDTFRAAAVEQLQVWGQRNNIPVIA 448
Cdd:cd01672 7 GIDGAGKTTLIELLAERLEARGYEVVLtrEPGGTPIGEAIRELLLDPEDEKMDPRA 62
|
|
| |
