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Conserved domains on  [gi|2067382822|dbj|GJA36517|]
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membrane protein [Aeromonas caviae]

Protein Classification

DUF1145 domain-containing protein( domain architecture ID 10535125)

DUF1145 domain-containing protein similar to Escherichia coli YhhL

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1145 super family cl11481
Protein of unknown function (DUF1145); This family consists of several hypothetical bacterial ...
 4-91 4.00e-16

Protein of unknown function (DUF1145); This family consists of several hypothetical bacterial proteins of unknown function.


The actual alignment was detected with superfamily member COG3776:

Pssm-ID: 472200  Cd Length: 91  Bit Score: 67.25  E-value: 4.00e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382822   4 VFNLLAMGVLLFFWFGVALALLGTLPGKLNGFLPVCGVIVILMHWVQASMIKAAC-KPYFAVTRLEFTQVLIFGVFGMMD 82
Cdd:COG3776     1 MLINLGRLLMLFVWGFLLLNLVHPFPKPLNIFLNVALGFMVLMHGLQLLLLKGTLpKDGPKLSKWDQLRIFLFGVFELLA 80


                  ....*....
gi 2067382822  83 IRTKLQAII 91
Cdd:COG3776    81 WQKKLKAQQ 89
 
Name Accession Description Interval E-value
YhhL COG3776
Uncharacterized conserved protein YhhL, DUF1145 family [Function unknown];
4-91 4.00e-16

Uncharacterized conserved protein YhhL, DUF1145 family [Function unknown];


Pssm-ID: 442990  Cd Length: 91  Bit Score: 67.25  E-value: 4.00e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382822   4 VFNLLAMGVLLFFWFGVALALLGTLPGKLNGFLPVCGVIVILMHWVQASMIKAAC-KPYFAVTRLEFTQVLIFGVFGMMD 82
Cdd:COG3776     1 MLINLGRLLMLFVWGFLLLNLVHPFPKPLNIFLNVALGFMVLMHGLQLLLLKGTLpKDGPKLSKWDQLRIFLFGVFELLA 80


                  ....*....
gi 2067382822  83 IRTKLQAII 91
Cdd:COG3776    81 WQKKLKAQQ 89
DUF1145 pfam06611
Protein of unknown function (DUF1145); This family consists of several hypothetical bacterial ...
 4-61 2.17e-09

Protein of unknown function (DUF1145); This family consists of several hypothetical bacterial proteins of unknown function.


Pssm-ID: 429030  Cd Length: 58  Bit Score: 49.16  E-value: 2.17e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2067382822   4 VFNLLAMGVLLFFWFGVALALLGTLPGKLNGFLPVCGVIVILMHWVQASMIKAACKPY 61
Cdd:pfam06611   1 MLINLGKLLMLGFWGVLLFNLVHPFPGPLNIFLNIAGGFLVLMHGLQLLLFKAALKKR 58
 
Name Accession Description Interval E-value
YhhL COG3776
Uncharacterized conserved protein YhhL, DUF1145 family [Function unknown];
4-91 4.00e-16

Uncharacterized conserved protein YhhL, DUF1145 family [Function unknown];


Pssm-ID: 442990  Cd Length: 91  Bit Score: 67.25  E-value: 4.00e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067382822   4 VFNLLAMGVLLFFWFGVALALLGTLPGKLNGFLPVCGVIVILMHWVQASMIKAAC-KPYFAVTRLEFTQVLIFGVFGMMD 82
Cdd:COG3776     1 MLINLGRLLMLFVWGFLLLNLVHPFPKPLNIFLNVALGFMVLMHGLQLLLLKGTLpKDGPKLSKWDQLRIFLFGVFELLA 80


                  ....*....
gi 2067382822  83 IRTKLQAII 91
Cdd:COG3776    81 WQKKLKAQQ 89
DUF1145 pfam06611
Protein of unknown function (DUF1145); This family consists of several hypothetical bacterial ...
 4-61 2.17e-09

Protein of unknown function (DUF1145); This family consists of several hypothetical bacterial proteins of unknown function.


Pssm-ID: 429030  Cd Length: 58  Bit Score: 49.16  E-value: 2.17e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2067382822   4 VFNLLAMGVLLFFWFGVALALLGTLPGKLNGFLPVCGVIVILMHWVQASMIKAACKPY 61
Cdd:pfam06611   1 MLINLGKLLMLGFWGVLLFNLVHPFPGPLNIFLNIAGGFLVLMHGLQLLLFKAALKKR 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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