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Conserved domains on  [gi|2158782787|dbj|GJC45968|]
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hypothetical protein KAM397_18480 [Acinetobacter sp. KAM397]

Protein Classification

YcgL domain-containing protein( domain architecture ID 10006930)

YcgL domain-containing protein similar to Escherichia coli protein YcgL with a novel alpha/beta/alpha sandwich fold

CATH:  3.10.510.20
SCOP:  4001814

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YcgL COG3100
Uncharacterized conserved protein YcgL, UPF0745 family [Function unknown];
1-86 7.51e-35

Uncharacterized conserved protein YcgL, UPF0745 family [Function unknown];


:

Pssm-ID: 442334  Cd Length: 85  Bit Score: 114.50  E-value: 7.51e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158782787   1 MHCSIYKSSKKDEMYLYIARPeqtedqaeafDPLEVLPEPMRVAFGRATFVMDLELSESRKLARVNVLHVIDSIQTRGFF 80
Cdd:COG3100     1 MLCAIYKSPKKDETYLYVEKR----------DDFSRVPEALLQMFGKPEFVMDLLLTPERKLARADAEKVLAALEEQGFY 70


                  ....*.
gi 2158782787  81 IQVPPE 86
Cdd:COG3100    71 LQMPPP 76
 
Name Accession Description Interval E-value
YcgL COG3100
Uncharacterized conserved protein YcgL, UPF0745 family [Function unknown];
1-86 7.51e-35

Uncharacterized conserved protein YcgL, UPF0745 family [Function unknown];


Pssm-ID: 442334  Cd Length: 85  Bit Score: 114.50  E-value: 7.51e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158782787   1 MHCSIYKSSKKDEMYLYIARPeqtedqaeafDPLEVLPEPMRVAFGRATFVMDLELSESRKLARVNVLHVIDSIQTRGFF 80
Cdd:COG3100     1 MLCAIYKSPKKDETYLYVEKR----------DDFSRVPEALLQMFGKPEFVMDLLLTPERKLARADAEKVLAALEEQGFY 70


                  ....*.
gi 2158782787  81 IQVPPE 86
Cdd:COG3100    71 LQMPPP 76
YcgL pfam05166
YcgL domain; This family of proteins formerly called DUF709 includes the E. coli gene ycgL. ...
 3-85 7.95e-33

YcgL domain; This family of proteins formerly called DUF709 includes the E. coli gene ycgL. homologs of YcgL are found in gammaproteobacteria. The structure of this protein shows a novel alpha/beta/alpha sandwich structure.


Pssm-ID: 428344  Cd Length: 73  Bit Score: 108.74  E-value: 7.95e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158782787   3 CSIYKSSKKDEMYLYIARPeqtedqaeafDPLEVLPEPMRVAFGRATFVMDLELSESRKLARVNVLHVIDSIQTRGFFIQ 82
Cdd:pfam05166   1 CAIYKSSKKDETYLYVEKR----------DDFSRVPEALLAMFGKPQFVMLLNLTPERKLARADIEKVLAALKEQGFYLQ 70


                  ...
gi 2158782787  83 VPP 85
Cdd:pfam05166  71 LPP 73
 
Name Accession Description Interval E-value
YcgL COG3100
Uncharacterized conserved protein YcgL, UPF0745 family [Function unknown];
1-86 7.51e-35

Uncharacterized conserved protein YcgL, UPF0745 family [Function unknown];


Pssm-ID: 442334  Cd Length: 85  Bit Score: 114.50  E-value: 7.51e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158782787   1 MHCSIYKSSKKDEMYLYIARPeqtedqaeafDPLEVLPEPMRVAFGRATFVMDLELSESRKLARVNVLHVIDSIQTRGFF 80
Cdd:COG3100     1 MLCAIYKSPKKDETYLYVEKR----------DDFSRVPEALLQMFGKPEFVMDLLLTPERKLARADAEKVLAALEEQGFY 70


                  ....*.
gi 2158782787  81 IQVPPE 86
Cdd:COG3100    71 LQMPPP 76
YcgL pfam05166
YcgL domain; This family of proteins formerly called DUF709 includes the E. coli gene ycgL. ...
 3-85 7.95e-33

YcgL domain; This family of proteins formerly called DUF709 includes the E. coli gene ycgL. homologs of YcgL are found in gammaproteobacteria. The structure of this protein shows a novel alpha/beta/alpha sandwich structure.


Pssm-ID: 428344  Cd Length: 73  Bit Score: 108.74  E-value: 7.95e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158782787   3 CSIYKSSKKDEMYLYIARPeqtedqaeafDPLEVLPEPMRVAFGRATFVMDLELSESRKLARVNVLHVIDSIQTRGFFIQ 82
Cdd:pfam05166   1 CAIYKSSKKDETYLYVEKR----------DDFSRVPEALLAMFGKPQFVMLLNLTPERKLARADIEKVLAALKEQGFYLQ 70


                  ...
gi 2158782787  83 VPP 85
Cdd:pfam05166  71 LPP 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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