NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2090489534|dbj|GJG89994|]
View 

NADH oxidase [Enterococcus faecium]

Protein Classification

FAD/NAD(P)-binding oxidoreductase( domain architecture ID 11418561)

FAD/NAD(P)-binding oxidoreductase catalyzes the transfer of electrons from one molecule, the electron donor or reductant, to another molecule, the electron acceptor or oxidant; similar to sulfide:quinone oxidoreductase which catalyzes the oxidation of hydrogen sulfide using quinone as the electron acceptor

CATH:  3.50.50.60
EC:  1.-.-.-
Gene Ontology:  GO:0016491|GO:0000166

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
FadH2 COG0446
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase ...
24-350 1.56e-81

NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism];


:

Pssm-ID: 440215 [Multi-domain]  Cd Length: 322  Bit Score: 254.35  E-value: 1.56e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  24 DSNYEVILIDKKSEISYLECGTSLFIKGEVSNLEDLFYQNRMTLnseIKK---LFLETEVDKIDIQNKKISCvkKDGTRF 100
Cdd:COG0446     3 GPDAEITVIEKGPHHSYQPCGLPYYVGGGIKDPEDLLVRTPESF---ERKgidVRTGTEVTAIDPEAKTVTL--RDGETL 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 101 SqeYDKVILATGSKQIMLDIPGNNLANIFSIKNFPNAKEIFKALDDSTIKKVGIIGAGYIGVEIAEAIRKRGKEVYLFDV 180
Cdd:COG0446    78 S--YDKLVLATGARPRPPPIPGLDLPGVFTLRTLDDADALREALKEFKGKRAVVIGGGPIGLELAEALRKRGLKVTLVER 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 181 ADRVLSTyYDRSFSDKVEEILSKNGIHLCLSESPKKYLGRKKIeKIVTTSGTQYSMDMVVQAIGFLSNSPIGEK-ELLRD 259
Cdd:COG0446   156 APRLLGV-LDPEMAALLEEELREHGVELRLGETVVAIDGDDKV-AVTLTDGEEIPADLVVVAPGVRPNTELAKDaGLALG 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 260 VSGAYLTNEYQQTNIKDIYAIGDCATTFFTSINRSSVDFSISNALRTAYIATQHINNQDFTPSGsQFTNGFSIFNYNFYA 339
Cdd:COG0446   234 ERGWIKVDETLQTSDPDVYAAGDCAEVPHPVTGKTVYIPLASAANKQGRVAAENILGGPAPFPG-LGTFISKVFDLCIAS 312
                         330
                  ....*....|.
gi 2090489534 340 AGlnlkTARLL 350
Cdd:COG0446   313 TG----TGRLL 319
 
Name Accession Description Interval E-value
FadH2 COG0446
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase ...
24-350 1.56e-81

NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism];


Pssm-ID: 440215 [Multi-domain]  Cd Length: 322  Bit Score: 254.35  E-value: 1.56e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  24 DSNYEVILIDKKSEISYLECGTSLFIKGEVSNLEDLFYQNRMTLnseIKK---LFLETEVDKIDIQNKKISCvkKDGTRF 100
Cdd:COG0446     3 GPDAEITVIEKGPHHSYQPCGLPYYVGGGIKDPEDLLVRTPESF---ERKgidVRTGTEVTAIDPEAKTVTL--RDGETL 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 101 SqeYDKVILATGSKQIMLDIPGNNLANIFSIKNFPNAKEIFKALDDSTIKKVGIIGAGYIGVEIAEAIRKRGKEVYLFDV 180
Cdd:COG0446    78 S--YDKLVLATGARPRPPPIPGLDLPGVFTLRTLDDADALREALKEFKGKRAVVIGGGPIGLELAEALRKRGLKVTLVER 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 181 ADRVLSTyYDRSFSDKVEEILSKNGIHLCLSESPKKYLGRKKIeKIVTTSGTQYSMDMVVQAIGFLSNSPIGEK-ELLRD 259
Cdd:COG0446   156 APRLLGV-LDPEMAALLEEELREHGVELRLGETVVAIDGDDKV-AVTLTDGEEIPADLVVVAPGVRPNTELAKDaGLALG 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 260 VSGAYLTNEYQQTNIKDIYAIGDCATTFFTSINRSSVDFSISNALRTAYIATQHINNQDFTPSGsQFTNGFSIFNYNFYA 339
Cdd:COG0446   234 ERGWIKVDETLQTSDPDVYAAGDCAEVPHPVTGKTVYIPLASAANKQGRVAAENILGGPAPFPG-LGTFISKVFDLCIAS 312
                         330
                  ....*....|.
gi 2090489534 340 AGlnlkTARLL 350
Cdd:COG0446   313 TG----TGRLL 319
PRK09564 PRK09564
coenzyme A disulfide reductase; Reviewed
3-430 4.60e-69

coenzyme A disulfide reductase; Reviewed


Pssm-ID: 181958 [Multi-domain]  Cd Length: 444  Bit Score: 226.08  E-value: 4.60e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534   3 KIVIIGSNHSGLAAARFLNLSDSNYEVILIDKKSEISYLECGTSLFIKGEVSNledlfyQNRM---TLNSEIKK---LFL 76
Cdd:PRK09564    2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDD------PNTMiarTPEEFIKSgidVKT 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  77 ETEVDKIDIQNKKIScVK--KDGTRFSQEYDKVILATGSKQIMLDIPGNNLANIFSIKNFPNAKEIFKALDDSTIKKVGI 154
Cdd:PRK09564   76 EHEVVKVDAKNKTIT-VKnlKTGSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVI 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 155 IGAGYIGVEIAEAIRKRGKEVYLFDVADRVLSTYYDRSFSDKVEEILSKNGIHLCLSESPKKYLGRKKIEKIVTTSGTqY 234
Cdd:PRK09564  155 IGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKGE-Y 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 235 SMDMVVQAIGFLSNSPIGEKELLRDVS-GAYLTNEYQQTNIKDIYAIGDCATTFFTSINRSSVDFSISNALRTAYIATQH 313
Cdd:PRK09564  234 EADVVIVATGVKPNTEFLEDTGLKTLKnGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGEN 313
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 314 INNQDFTPSGSQFTNGFSIFNYNFYAAGLNLKTARLLSesIDY--IEIEDFIRPAFLRKNSRVKLRISFEKNTKRIVGVQ 391
Cdd:PRK09564  314 LAGRHVSFKGTLGSACIKVLDLEAARTGLTEEEAKKLG--IDYktVFIKDKNHTNYYPGQEDLYVKLIYEADTKVILGGQ 391
                         410       420       430
                  ....*....|....*....|....*....|....*....
gi 2090489534 392 LCSQEDLSGLLSMFSLAIEEQITLDKLKMLDYLFHPSFS 430
Cdd:PRK09564  392 IIGKKGAVLRIDALAVAIYAKLTTQELGMMDFCYAPPFA 430
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
3-283 6.55e-61

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 200.24  E-value: 6.55e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534   3 KIVIIGSNHSGLAAARFLnlSDSNYEVILIDKKSEISYLECGTSLFIKGEVSNLEDLFYQNRM---------TLNSEIKK 73
Cdd:pfam07992   2 DVVVIGGGPAGLAAALTL--AQLGGKVTLIEDEGTCPYGGCVLSKALLGAAEAPEIASLWADLykrkeevvkKLNNGIEV 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  74 LfLETEVDKIDIQNKKISCVK-KDGTRFSQEYDKVILATGSKQIMLDIPGNNLANIFSIKNFPNAKEIFKALDDstiKKV 152
Cdd:pfam07992  80 L-LGTEVVSIDPGAKKVVLEElVDGDGETITYDRLVIATGARPRLPPIPGVELNVGFLVRTLDSAEALRLKLLP---KRV 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 153 GIIGAGYIGVEIAEAIRKRGKEVYLFDVADRVLSTyYDRSFSDKVEEILSKNGIHLCLSESPKKYLGRKKIEKIVTTSGT 232
Cdd:pfam07992 156 VVVGGGYIGVELAAALAKLGKEVTLIEALDRLLRA-FDEEISAALEKALEKNGVEVRLGTSVKEIIGDGDGVEVILKDGT 234
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2090489534 233 QYSMDMVVQAIGFLSNSPIGEKE-LLRDVSGAYLTNEYQQTNIKDIYAIGDC 283
Cdd:pfam07992 235 EIDADLVVVAIGRRPNTELLEAAgLELDERGGIVVDEYLRTSVPGIYAAGDC 286
nitri_red_nirB TIGR02374
nitrite reductase [NAD(P)H], large subunit; [Central intermediary metabolism, Nitrogen ...
4-284 1.91e-25

nitrite reductase [NAD(P)H], large subunit; [Central intermediary metabolism, Nitrogen metabolism]


Pssm-ID: 162827 [Multi-domain]  Cd Length: 785  Bit Score: 109.53  E-value: 1.91e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534   4 IVIIGSnhsGLAAARF----LNLSDSNYEVILIDKKSEISYLECGTSLFIKGEVSnLEDLfyqnrmTLNSE-------IK 72
Cdd:TIGR02374   1 LVLVGN---GMAGHRCieevLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEAD-LDDI------TLNSKdwyekhgIT 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  73 kLFLETEVDKIDIQNKKiscVKKDGTRfSQEYDKVILATGSKQIMLDIPGNNLANIFSIKNFPNAKEIFKALDDStiKKV 152
Cdd:TIGR02374  71 -LYTGETVIQIDTDQKQ---VITDAGR-TLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQRF--KKA 143
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 153 GIIGAGYIGVEIAEAIRKRGKEVYLFDVADRVLSTYYDRSFSDKVEEILSKNGIHLCLSESPKKYLGRKKIEKIVTTSGT 232
Cdd:TIGR02374 144 AVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGS 223
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2090489534 233 QYSMDMVVQAIGFLSNSPIGEKELLrDVSGAYLTNEYQQTNIKDIYAIGDCA 284
Cdd:TIGR02374 224 SLEADLIVMAAGIRPNDELAVSAGI-KVNRGIIVNDSMQTSDPDIYAVGECA 274
NAD_bind_Glutamyl_tRNA_reduct cd05213
NADP-binding domain of glutamyl-tRNA reductase; Glutamyl-tRNA reductase catalyzes the ...
137-243 9.01e-03

NADP-binding domain of glutamyl-tRNA reductase; Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts.


Pssm-ID: 133452 [Multi-domain]  Cd Length: 311  Bit Score: 38.02  E-value: 9.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 137 AKEIFKALDDstiKKVGIIGAGYIGVEIAEAI-RKRGKEVYlfdVADRvlsTYydrsfsDKVEEILSKNGIHLCLSESPK 215
Cdd:cd05213   169 AEKIFGNLKG---KKVLVIGAGEMGELAAKHLaAKGVAEIT---IANR---TY------ERAEELAKELGGNAVPLDELL 233
                          90       100
                  ....*....|....*....|....*...
gi 2090489534 216 KYLGRKKIekIVTTSGTQYSMDMVVQAI 243
Cdd:cd05213   234 ELLNEADV--VISATGAPHYAKIVERAM 259
 
Name Accession Description Interval E-value
FadH2 COG0446
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase ...
24-350 1.56e-81

NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism];


Pssm-ID: 440215 [Multi-domain]  Cd Length: 322  Bit Score: 254.35  E-value: 1.56e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  24 DSNYEVILIDKKSEISYLECGTSLFIKGEVSNLEDLFYQNRMTLnseIKK---LFLETEVDKIDIQNKKISCvkKDGTRF 100
Cdd:COG0446     3 GPDAEITVIEKGPHHSYQPCGLPYYVGGGIKDPEDLLVRTPESF---ERKgidVRTGTEVTAIDPEAKTVTL--RDGETL 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 101 SqeYDKVILATGSKQIMLDIPGNNLANIFSIKNFPNAKEIFKALDDSTIKKVGIIGAGYIGVEIAEAIRKRGKEVYLFDV 180
Cdd:COG0446    78 S--YDKLVLATGARPRPPPIPGLDLPGVFTLRTLDDADALREALKEFKGKRAVVIGGGPIGLELAEALRKRGLKVTLVER 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 181 ADRVLSTyYDRSFSDKVEEILSKNGIHLCLSESPKKYLGRKKIeKIVTTSGTQYSMDMVVQAIGFLSNSPIGEK-ELLRD 259
Cdd:COG0446   156 APRLLGV-LDPEMAALLEEELREHGVELRLGETVVAIDGDDKV-AVTLTDGEEIPADLVVVAPGVRPNTELAKDaGLALG 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 260 VSGAYLTNEYQQTNIKDIYAIGDCATTFFTSINRSSVDFSISNALRTAYIATQHINNQDFTPSGsQFTNGFSIFNYNFYA 339
Cdd:COG0446   234 ERGWIKVDETLQTSDPDVYAAGDCAEVPHPVTGKTVYIPLASAANKQGRVAAENILGGPAPFPG-LGTFISKVFDLCIAS 312
                         330
                  ....*....|.
gi 2090489534 340 AGlnlkTARLL 350
Cdd:COG0446   313 TG----TGRLL 319
PRK09564 PRK09564
coenzyme A disulfide reductase; Reviewed
3-430 4.60e-69

coenzyme A disulfide reductase; Reviewed


Pssm-ID: 181958 [Multi-domain]  Cd Length: 444  Bit Score: 226.08  E-value: 4.60e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534   3 KIVIIGSNHSGLAAARFLNLSDSNYEVILIDKKSEISYLECGTSLFIKGEVSNledlfyQNRM---TLNSEIKK---LFL 76
Cdd:PRK09564    2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDD------PNTMiarTPEEFIKSgidVKT 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  77 ETEVDKIDIQNKKIScVK--KDGTRFSQEYDKVILATGSKQIMLDIPGNNLANIFSIKNFPNAKEIFKALDDSTIKKVGI 154
Cdd:PRK09564   76 EHEVVKVDAKNKTIT-VKnlKTGSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVI 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 155 IGAGYIGVEIAEAIRKRGKEVYLFDVADRVLSTYYDRSFSDKVEEILSKNGIHLCLSESPKKYLGRKKIEKIVTTSGTqY 234
Cdd:PRK09564  155 IGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKGE-Y 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 235 SMDMVVQAIGFLSNSPIGEKELLRDVS-GAYLTNEYQQTNIKDIYAIGDCATTFFTSINRSSVDFSISNALRTAYIATQH 313
Cdd:PRK09564  234 EADVVIVATGVKPNTEFLEDTGLKTLKnGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGEN 313
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 314 INNQDFTPSGSQFTNGFSIFNYNFYAAGLNLKTARLLSesIDY--IEIEDFIRPAFLRKNSRVKLRISFEKNTKRIVGVQ 391
Cdd:PRK09564  314 LAGRHVSFKGTLGSACIKVLDLEAARTGLTEEEAKKLG--IDYktVFIKDKNHTNYYPGQEDLYVKLIYEADTKVILGGQ 391
                         410       420       430
                  ....*....|....*....|....*....|....*....
gi 2090489534 392 LCSQEDLSGLLSMFSLAIEEQITLDKLKMLDYLFHPSFS 430
Cdd:PRK09564  392 IIGKKGAVLRIDALAVAIYAKLTTQELGMMDFCYAPPFA 430
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
3-283 6.55e-61

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 200.24  E-value: 6.55e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534   3 KIVIIGSNHSGLAAARFLnlSDSNYEVILIDKKSEISYLECGTSLFIKGEVSNLEDLFYQNRM---------TLNSEIKK 73
Cdd:pfam07992   2 DVVVIGGGPAGLAAALTL--AQLGGKVTLIEDEGTCPYGGCVLSKALLGAAEAPEIASLWADLykrkeevvkKLNNGIEV 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  74 LfLETEVDKIDIQNKKISCVK-KDGTRFSQEYDKVILATGSKQIMLDIPGNNLANIFSIKNFPNAKEIFKALDDstiKKV 152
Cdd:pfam07992  80 L-LGTEVVSIDPGAKKVVLEElVDGDGETITYDRLVIATGARPRLPPIPGVELNVGFLVRTLDSAEALRLKLLP---KRV 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 153 GIIGAGYIGVEIAEAIRKRGKEVYLFDVADRVLSTyYDRSFSDKVEEILSKNGIHLCLSESPKKYLGRKKIEKIVTTSGT 232
Cdd:pfam07992 156 VVVGGGYIGVELAAALAKLGKEVTLIEALDRLLRA-FDEEISAALEKALEKNGVEVRLGTSVKEIIGDGDGVEVILKDGT 234
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2090489534 233 QYSMDMVVQAIGFLSNSPIGEKE-LLRDVSGAYLTNEYQQTNIKDIYAIGDC 283
Cdd:pfam07992 235 EIDADLVVVAIGRRPNTELLEAAgLELDERGGIVVDEYLRTSVPGIYAAGDC 286
NirB COG1251
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];
1-342 1.20e-53

NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];


Pssm-ID: 440863 [Multi-domain]  Cd Length: 402  Bit Score: 184.19  E-value: 1.20e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534   1 MEKIVIIGSNHSGLAAARFLNLSDSNYEVILIDKKSEISYLECGTSLFIKGEVSnLEDL------FY-QNRMTLnseikk 73
Cdd:COG1251     1 KMRIVIIGAGMAGVRAAEELRKLDPDGEITVIGAEPHPPYNRPPLSKVLAGETD-EEDLllrpadFYeENGIDL------ 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  74 lFLETEVDKIDIQNKKISCvkKDGTRFSqeYDKVILATGSKQIMLDIPGNNLANIFSIKNFPNAKEIFKALDDStiKKVG 153
Cdd:COG1251    74 -RLGTRVTAIDRAARTVTL--ADGETLP--YDKLVLATGSRPRVPPIPGADLPGVFTLRTLDDADALRAALAPG--KRVV 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 154 IIGAGYIGVEIAEAIRKRGKEVYLFDVADRVLSTYYDRSFSDKVEEILSKNGIHLCLSESPKKYLGRKKIEKIVTTSGTQ 233
Cdd:COG1251   147 VIGGGLIGLEAAAALRKRGLEVTVVERAPRLLPRQLDEEAGALLQRLLEALGVEVRLGTGVTEIEGDDRVTGVRLADGEE 226
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 234 YSMDMVVQAIGFLSNSpigekELLRD----VSGAYLTNEYQQTNIKDIYAIGDCAtTFFTSINRSSVDFSISNALRTAYI 309
Cdd:COG1251   227 LPADLVVVAIGVRPNT-----ELARAaglaVDRGIVVDDYLRTSDPDIYAAGDCA-EHPGPVYGRRVLELVAPAYEQARV 300
                         330       340       350
                  ....*....|....*....|....*....|...
gi 2090489534 310 ATQHINNQDFTPSGSQFTNGFSIFNYNFYAAGL 342
Cdd:COG1251   301 AAANLAGGPAAYEGSVPSTKLKVFGVDVASAGD 333
PRK13512 PRK13512
coenzyme A disulfide reductase; Provisional
1-436 3.85e-41

coenzyme A disulfide reductase; Provisional


Pssm-ID: 184103 [Multi-domain]  Cd Length: 438  Bit Score: 151.86  E-value: 3.85e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534   1 MEKIVIIGSNHSGLAAARFLNLSDSNYEVILIDKKSEISYLECGTSLFIKGEVSNLEDL-------FYQNRmtlNSEIKK 73
Cdd:PRK13512    1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYAlaytpekFYDRK---QITVKT 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  74 LFletEVDKIDIQNKKISCV-KKDGTRFSQEYDKVILATGSKQIMLDIpgnNLANIFSIKNFPNAKEIFKALDDSTIKKV 152
Cdd:PRK13512   78 YH---EVIAINDERQTVTVLnRKTNEQFEESYDKLILSPGASANSLGF---ESDITFTLRNLEDTDAIDQFIKANQVDKA 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 153 GIIGAGYIGVEIAEAIRKRGKEVYLFDVADRVLSTyYDRSFSDKVEEILSKNGIHLCLSESPKKYLGRkkiekIVT-TSG 231
Cdd:PRK13512  152 LVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIPYRLNEEIDAINGN-----EVTfKSG 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 232 TQYSMDMVVQAIGFLSNSP-IGEKELLRDVSGAYLTNEYQQTNIKDIYAIGDCATTFFTSINRSSVDFSISNALRTAYIA 310
Cdd:PRK13512  226 KVEHYDMIIEGVGTHPNSKfIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIV 305
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 311 TQHI-NNQDFTPSGSQFTNGFSIFNYNFYAAGLNLKtaRLLSESIDYIEIEDFIRPAFLRKNSRVKLRISFEKNTKRIVG 389
Cdd:PRK13512  306 AEQIaGNDTIEFKGFLGNNIVKFFDYTFASVGVKPN--ELKQFDYKMVEVTQGAHANYYPGNSPLHLRVYYDTSNRKILR 383
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*..
gi 2090489534 390 VQLCSQEDLSGLLSMFSLAIEEQITLDKLKMLDYLFHPSFSQPYNFI 436
Cdd:PRK13512  384 AAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYSHPKDLI 430
Ndh COG1252
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
1-284 4.63e-35

NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];


Pssm-ID: 440864 [Multi-domain]  Cd Length: 386  Bit Score: 134.10  E-value: 4.63e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534   1 MEKIVIIGSNHSGLAAARFL-NLSDSNYEVILIDKKSEISYL----ECGTSLFIKGEVS-NLEDLFYQNRMTlnseikkl 74
Cdd:COG1252     1 MKRIVIVGGGFAGLEAARRLrKKLGGDAEVTLIDPNPYHLFQpllpEVAAGTLSPDDIAiPLRELLRRAGVR-------- 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  75 FLETEVDKIDIQNKKISCvkKDGTRFSqeYDKVILATGSKQIMLDIPGnnLA-NIFSIKNFPNAKEIFKALDDSTIK--- 150
Cdd:COG1252    73 FIQGEVTGIDPEARTVTL--ADGRTLS--YDYLVIATGSVTNFFGIPG--LAeHALPLKTLEDALALRERLLAAFERaer 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 151 ----KVGIIGAGYIGVE----IAEAIRKRGK---------EVYLFDVADRVLSTyYDRSFSDKVEEILSKNGIHLCLSES 213
Cdd:COG1252   147 rrllTIVVVGGGPTGVElageLAELLRKLLRypgidpdkvRITLVEAGPRILPG-LGEKLSEAAEKELEKRGVEVHTGTR 225
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2090489534 214 PKKYLGrkkiEKIVTTSGTQYSMDMVVQAIGFLSNSPIGEKELLRDVSGAYLTNEYQQT-NIKDIYAIGDCA 284
Cdd:COG1252   226 VTEVDA----DGVTLEDGEEIPADTVIWAAGVKAPPLLADLGLPTDRRGRVLVDPTLQVpGHPNVFAIGDCA 293
Lpd COG1249
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ...
105-430 6.45e-27

Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation


Pssm-ID: 440861 [Multi-domain]  Cd Length: 456  Bit Score: 112.10  E-value: 6.45e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 105 DKVILATGSKQIMLDIPGNNLANI------FSIKNFPnakeifkalddstiKKVGIIGAGYIGVEIAEAIRKRGKEVYLF 178
Cdd:COG1249   132 DHIVIATGSRPRVPPIPGLDEVRVltsdeaLELEELP--------------KSLVVIGGGYIGLEFAQIFARLGSEVTLV 197
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 179 DVADRVLSTyYDRSFSDKVEEILSKNGIHLCLSESPKKyLGRKKIEKIVTTSG----TQYSMDMVVQAIGFLSNSP-IG- 252
Cdd:COG1249   198 ERGDRLLPG-EDPEISEALEKALEKEGIDILTGAKVTS-VEKTGDGVTVTLEDgggeEAVEADKVLVATGRRPNTDgLGl 275
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 253 EK---ELlrDVSGAYLTNEYQQTNIKDIYAIGDCATTF-FTSInrssvdfsisnALRTAYIATQHINNQDFTPsgsqftn 328
Cdd:COG1249   276 EAagvEL--DERGGIKVDEYLRTSVPGIYAIGDVTGGPqLAHV-----------ASAEGRVAAENILGKKPRP------- 335
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 329 gfsiFNYNFYAA-----------GLNLKTARllSESIDYIEIEdfirpAFLRKNSR----------VKLrIsFEKNTKRI 387
Cdd:COG1249   336 ----VDYRAIPSvvftdpeiasvGLTEEEAR--EAGIDVKVGK-----FPFAANGRalalgetegfVKL-I-ADAETGRI 402
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 2090489534 388 VGVQLCSqEDLSGLLSMFSLAIEEQITLDKLkmLDYLF-HPSFS 430
Cdd:COG1249   403 LGAHIVG-PHAGELIHEAALAMEMGLTVEDL--ADTIHaHPTLS 443
nitri_red_nirB TIGR02374
nitrite reductase [NAD(P)H], large subunit; [Central intermediary metabolism, Nitrogen ...
4-284 1.91e-25

nitrite reductase [NAD(P)H], large subunit; [Central intermediary metabolism, Nitrogen metabolism]


Pssm-ID: 162827 [Multi-domain]  Cd Length: 785  Bit Score: 109.53  E-value: 1.91e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534   4 IVIIGSnhsGLAAARF----LNLSDSNYEVILIDKKSEISYLECGTSLFIKGEVSnLEDLfyqnrmTLNSE-------IK 72
Cdd:TIGR02374   1 LVLVGN---GMAGHRCieevLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEAD-LDDI------TLNSKdwyekhgIT 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  73 kLFLETEVDKIDIQNKKiscVKKDGTRfSQEYDKVILATGSKQIMLDIPGNNLANIFSIKNFPNAKEIFKALDDStiKKV 152
Cdd:TIGR02374  71 -LYTGETVIQIDTDQKQ---VITDAGR-TLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQRF--KKA 143
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 153 GIIGAGYIGVEIAEAIRKRGKEVYLFDVADRVLSTYYDRSFSDKVEEILSKNGIHLCLSESPKKYLGRKKIEKIVTTSGT 232
Cdd:TIGR02374 144 AVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGS 223
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2090489534 233 QYSMDMVVQAIGFLSNSPIGEKELLrDVSGAYLTNEYQQTNIKDIYAIGDCA 284
Cdd:TIGR02374 224 SLEADLIVMAAGIRPNDELAVSAGI-KVNRGIIVNDSMQTSDPDIYAVGECA 274
PRK04965 PRK04965
NADH:flavorubredoxin reductase NorW;
74-284 6.72e-23

NADH:flavorubredoxin reductase NorW;


Pssm-ID: 179902 [Multi-domain]  Cd Length: 377  Bit Score: 99.61  E-value: 6.72e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  74 LFLETEVDKIDIQNKkisCVKKDGTRFSqeYDKVILATGSKQIMLDIPGNNLA---NifSIKNFPNAKEifkALDDStiK 150
Cdd:PRK04965   75 LFPHTWVTDIDAEAQ---VVKSQGNQWQ--YDKLVLATGASAFVPPIPGRELMltlN--SQQEYRAAET---QLRDA--Q 142
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 151 KVGIIGAGYIGVEIAEAIRKRGKEVYLFDVADRVLSTYYDRSFSDKVEEILSKNGIHLCLsespKKYLGRkkIEK----- 225
Cdd:PRK04965  143 RVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLL----KSQLQG--LEKtdsgi 216
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 226 -IVTTSGTQYSMDMVVQAIGFLSNSPIGEKELLrDVSGAYLTNEYQQTNIKDIYAIGDCA 284
Cdd:PRK04965  217 rATLDSGRSIEVDAVIAAAGLRPNTALARRAGL-AVNRGIVVDSYLQTSAPDIYALGDCA 275
PRK06116 PRK06116
glutathione reductase; Validated
93-283 1.59e-19

glutathione reductase; Validated


Pssm-ID: 235701 [Multi-domain]  Cd Length: 450  Bit Score: 90.60  E-value: 1.59e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  93 VKKDGTRFSQeyDKVILATGSKQIMLDIPGNNLAnIFSiknfpnaKEIFkALDDsTIKKVGIIGAGYIGVEIAEAIRKRG 172
Cdd:PRK06116  123 VEVNGERYTA--DHILIATGGRPSIPDIPGAEYG-ITS-------DGFF-ALEE-LPKRVAVVGAGYIAVEFAGVLNGLG 190
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 173 KEVYLFDVADRVLSTYyDRSFSDKVEEILSKNGIHLCLSESPKKylgrkkIEK-------IVTTSGTQYSMDMVVQAIGF 245
Cdd:PRK06116  191 SETHLFVRGDAPLRGF-DPDIRETLVEEMEKKGIRLHTNAVPKA------VEKnadgsltLTLEDGETLTVDCLIWAIGR 263
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 2090489534 246 --------LSNSPIgekELlrDVSGAYLTNEYQQTNIKDIYAIGDC 283
Cdd:PRK06116  264 epntdglgLENAGV---KL--NEKGYIIVDEYQNTNVPGIYAVGDV 304
lipoamide_DH TIGR01350
dihydrolipoamide dehydrogenase; This model describes dihydrolipoamide dehydrogenase, a ...
93-283 6.84e-18

dihydrolipoamide dehydrogenase; This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.


Pssm-ID: 273568 [Multi-domain]  Cd Length: 460  Bit Score: 85.39  E-value: 6.84e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  93 VKKDGTRFSQEYDKVILATGSKQIMLdipgnNLANIFSIKNFPNAKEIFkALDdSTIKKVGIIGAGYIGVEIAEAIRKRG 172
Cdd:TIGR01350 121 VTGENGEETLEAKNIIIATGSRPRSL-----PGPFDFDGKVVITSTGAL-NLE-EVPESLVIIGGGVIGIEFASIFASLG 193
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 173 KEVYLFDVADRVLStYYDRSFSDKVEEILSKNGIHLCLSESPKKYLGRKKiEKIVTTSGTQYSM---DMVVQAIGFLSNS 249
Cdd:TIGR01350 194 SKVTVIEMLDRILP-GEDAEVSKVLQKALKKKGVKILTNTKVTAVEKNDD-QVTYENKGGETETltgEKVLVAVGRKPNT 271
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 2090489534 250 P-IGEKEL--LRDVSGAYLTNEYQQTNIKDIYAIGDC 283
Cdd:TIGR01350 272 EgLGLEKLgvELDERGRIVVDEYMRTNVPGIYAIGDV 308
TrxB COG0492
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];
3-285 7.99e-17

Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440258 [Multi-domain]  Cd Length: 305  Bit Score: 80.55  E-value: 7.99e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534   3 KIVIIGSNHSGLAAArfLNLSDSNYEVILIDKKseisylECGTSLFIKGEVSNL---------EDLFyqNRMTlnSEIKK 73
Cdd:COG0492     2 DVVIIGAGPAGLTAA--IYAARAGLKTLVIEGG------EPGGQLATTKEIENYpgfpegisgPELA--ERLR--EQAER 69
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  74 L---FLETEVDKIDIQNKKISCVKKDGTRFsqEYDKVILATGSKQIMLDIPGNNLaniFSIKN-----------FPNake 139
Cdd:COG0492    70 FgaeILLEEVTSVDKDDGPFRVTTDDGTEY--EAKAVIIATGAGPRKLGLPGEEE---FEGRGvsycatcdgffFRG--- 141
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 140 ifkalddstiKKVGIIGAGYIGVEIAEAIRKRGKEVYLFDVADRVLSTYYDrsfsdkVEEILSKNGIHLCLSESPKKYLG 219
Cdd:COG0492   142 ----------KDVVVVGGGDSALEEALYLTKFASKVTLIHRRDELRASKIL------VERLRANPKIEVLWNTEVTEIEG 205
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2090489534 220 RKKIEKIVTTSG-----TQYSMDMVVQAIGFLSNS-PIGEKELLRDVSGAYLTNEYQQTNIKDIYAIGDCAT 285
Cdd:COG0492   206 DGRVEGVTLKNVktgeeKELEVDGVFVAIGLKPNTeLLKGLGLELDEDGYIVVDEDMETSVPGVFAAGDVRD 277
Pyr_redox pfam00070
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
151-231 1.52e-16

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 425450 [Multi-domain]  Cd Length: 80  Bit Score: 74.16  E-value: 1.52e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 151 KVGIIGAGYIGVEIAEAIRKRGKEVYLFDVADRVLStYYDRSFSDKVEEILSKNGIHLCLSESPKKYLGRKKIEKIVTTS 230
Cdd:pfam00070   1 RVVVVGGGYIGLELAGALARLGSKVTVVERRDRLLP-GFDPEIAKILQEKLEKNGIEFLLNTTVEAIEGNGDGVVVVLTD 79

                  .
gi 2090489534 231 G 231
Cdd:pfam00070  80 G 80
PTZ00058 PTZ00058
glutathione reductase; Provisional
107-283 2.91e-15

glutathione reductase; Provisional


Pssm-ID: 185420 [Multi-domain]  Cd Length: 561  Bit Score: 77.73  E-value: 2.91e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 107 VILATGSKQIMLDIPGnnLANIFSIKNFPNAKEIfkalddstiKKVGIIGAGYIGVEIAEAIRKRGKEVYLFDVADRVLS 186
Cdd:PTZ00058  206 ILIAVGNKPIFPDVKG--KEFTISSDDFFKIKEA---------KRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR 274
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 187 TyYDRSFSDKVEEILSKNGIHLCLSESPKKY--LGRKKIEKIVTTSGTQYSMDMVVQAIGFLSNSP-IGEKELLRDVSGA 263
Cdd:PTZ00058  275 K-FDETIINELENDMKKNNINIITHANVEEIekVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEdLNLKALNIKTPKG 353
                         170       180
                  ....*....|....*....|.
gi 2090489534 264 Y-LTNEYQQTNIKDIYAIGDC 283
Cdd:PTZ00058  354 YiKVDDNQRTSVKHIYAVGDC 374
PRK06292 PRK06292
dihydrolipoamide dehydrogenase; Validated
105-430 3.88e-15

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235774 [Multi-domain]  Cd Length: 460  Bit Score: 77.14  E-value: 3.88e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 105 DKVILATGSKQIMldIPGNNLAN---------IFSIKNFPnakeifkalddstiKKVGIIGAGYIGVEIAEAIRKRGKEV 175
Cdd:PRK06292  132 KNIVIATGSRVPP--IPGVWLILgdrlltsddAFELDKLP--------------KSLAVIGGGVIGLELGQALSRLGVKV 195
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 176 YLFDVADRVLSTyYDRSFSDKVEEILSKNgIHLCLSESPKKYLGRKKIEKIVTTSG--TQY-SMDMVVQAIGFLSNSPIG 252
Cdd:PRK06292  196 TVFERGDRILPL-EDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGgkTETiEADYVLVATGRRPNTDGL 273
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 253 --EK---ELlrDVSGAYLTNEYQQTNIKDIYAIGDCA--TTFFTSINRSSVdFSISNALRTA-----YIATQHINnqdFT 320
Cdd:PRK06292  274 glENtgiEL--DERGRPVVDEHTQTSVPGIYAAGDVNgkPPLLHEAADEGR-IAAENAAGDVaggvrYHPIPSVV---FT 347
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 321 -PSgsqftngfsifnynfyAAGLNLKTARLLSESIDYIEIEdfirpAFLRKNSRVK--------LRISFEKNTKRIVGVQ 391
Cdd:PRK06292  348 dPQ----------------IASVGLTEEELKAAGIDYVVGE-----VPFEAQGRARvmgkndgfVKVYADKKTGRLLGAH 406
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 2090489534 392 LCSqEDLSGLLSMFSLAIEEQITL-DKLKMLDYlfHPSFS 430
Cdd:PRK06292  407 IIG-PDAEHLIHLLAWAMQQGLTVeDLLRMPFY--HPTLS 443
PLN02507 PLN02507
glutathione reductase
67-282 9.19e-15

glutathione reductase


Pssm-ID: 215281 [Multi-domain]  Cd Length: 499  Bit Score: 76.01  E-value: 9.19e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  67 LNSEIKKLFLETEVDKIDIQNK-----KISCVKKDGTRFSQEYDKVILATGSKQIMLDIPGNNLA----NIFSIKNFPna 137
Cdd:PLN02507  126 LNGIYKRLLANAGVKLYEGEGKivgpnEVEVTQLDGTKLRYTAKHILIATGSRAQRPNIPGKELAitsdEALSLEELP-- 203
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 138 keifkalddstiKKVGIIGAGYIGVEIAEAIRKRGKEVYLFDVADRVLstyydRSFSDKVEEILSKN----GIHLclseS 213
Cdd:PLN02507  204 ------------KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-----RGFDDEMRAVVARNlegrGINL----H 262
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2090489534 214 PKKYLGR-KKIE---KIVTTSGTQYSMDMVVQAIGFLSNSPIGEKELL---RDVSGAYLTNEYQQTNIKDIYAIGD 282
Cdd:PLN02507  263 PRTNLTQlTKTEggiKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVgveLDKAGAVKVDEYSRTNIPSIWAIGD 338
GltD COG0493
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ...
3-285 1.09e-14

NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis


Pssm-ID: 440259 [Multi-domain]  Cd Length: 434  Bit Score: 75.56  E-value: 1.09e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534   3 KIVIIGSNHSGLAAARFLNLSdsNYEVILIDKKSEI---------SY-LECGtslFIKGEVSNLEDL---FYQNrmtlns 69
Cdd:COG0493   123 KVAVVGSGPAGLAAAYQLARA--GHEVTVFEALDKPggllrygipEFrLPKD---VLDREIELIEALgveFRTN------ 191
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  70 eikklfleTEVDK-IDIQNKKiscvkkdgtrfsQEYDKVILATGS-KQIMLDIPGNNLANIFSIKNF--PNAKEIFKALD 145
Cdd:COG0493   192 --------VEVGKdITLDELL------------EEFDAVFLATGAgKPRDLGIPGEDLKGVHSAMDFltAVNLGEAPDTI 251
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 146 DSTIKKVGIIGAGYIGVEIA-EAIRKRGKEVYLFDVADRVLSTYYDRSFSDKVEEilsknGIHLCLSESPKKYLGRK--- 221
Cdd:COG0493   252 LAVGKRVVVIGGGNTAMDCArTALRLGAESVTIVYRRTREEMPASKEEVEEALEE-----GVEFLFLVAPVEIIGDEngr 326
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 222 -------KIE----------KIVTTSGTQYSM--DMVVQAIGFLSNSPI--GEKELLRDVSGAYLTNE-YQQTNIKDIYA 279
Cdd:COG0493   327 vtglecvRMElgepdesgrrRPVPIEGSEFTLpaDLVILAIGQTPDPSGleEELGLELDKRGTIVVDEeTYQTSLPGVFA 406

                  ....*.
gi 2090489534 280 IGDCAT 285
Cdd:COG0493   407 GGDAVR 412
MerA TIGR02053
mercury(II) reductase; This model represents the mercuric reductase found in the mer operon ...
93-283 1.60e-14

mercury(II) reductase; This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. [Cellular processes, Detoxification]


Pssm-ID: 273944 [Multi-domain]  Cd Length: 463  Bit Score: 75.15  E-value: 1.60e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  93 VKKDGTRFSQEYDKVILATGSKQIMLDIPGNNLANIFSiknfpnAKEIFKAldDSTIKKVGIIGAGYIGVEIAEAIRKRG 172
Cdd:TIGR02053 118 VKVDLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLT------SEEALAL--DRIPESLAVIGGGAIGVELAQAFARLG 189
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 173 KEVYLFDVADRVLStYYDRSFSDKVEEILSKNGIHLCLS---ESPKKYLGRKKIEKIVTTSGTQYSMDMVVQAIGFLSNS 249
Cdd:TIGR02053 190 SEVTILQRSDRLLP-REEPEISAAVEEALAEEGIEVVTSaqvKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNT 268
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 2090489534 250 -PIG-EKELLR-DVSGAYLTNEYQQTNIKDIYAIGDC 283
Cdd:TIGR02053 269 dGLGlEKAGVKlDERGGILVDETLRTSNPGIYAAGDV 305
PRK06370 PRK06370
FAD-containing oxidoreductase;
103-283 1.12e-13

FAD-containing oxidoreductase;


Pssm-ID: 235787 [Multi-domain]  Cd Length: 463  Bit Score: 72.54  E-value: 1.12e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 103 EYDKVILATGSKQIMLDIPGNN----LAN--IFSIKNFPnakeifkalddstiKKVGIIGAGYIGVEIAEAIRKRGKEVY 176
Cdd:PRK06370  133 RAKRIFINTGARAAIPPIPGLDevgyLTNetIFSLDELP--------------EHLVIIGGGYIGLEFAQMFRRFGSEVT 198
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 177 LFDVADRVLSTyYDRSFSDKVEEILSKNGIHLCLSESPKKY--LGRKKIEKIVTTSGTQY-SMDMVVQAIGFLSNSpige 253
Cdd:PRK06370  199 VIERGPRLLPR-EDEDVAAAVREILEREGIDVRLNAECIRVerDGDGIAVGLDCNGGAPEiTGSHILVAVGRVPNT---- 273
                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 2090489534 254 kELL--------RDVSGAYLTNEYQQTNIKDIYAIGDC 283
Cdd:PRK06370  274 -DDLgleaagveTDARGYIKVDDQLRTTNPGIYAAGDC 310
trypano_reduc TIGR01423
trypanothione-disulfide reductase; Trypanothione, a glutathione-modified derivative of ...
105-282 4.04e-13

trypanothione-disulfide reductase; Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.


Pssm-ID: 200098 [Multi-domain]  Cd Length: 486  Bit Score: 71.16  E-value: 4.04e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 105 DKVILATGSKQIMLDIPGNNLAnIFSIKNFpnakeifkALDDSTiKKVGIIGAGYIGVEIA---EAIRKRGKEVYLFDVA 181
Cdd:TIGR01423 153 EHILLATGSWPQMLGIPGIEHC-ISSNEAF--------YLDEPP-RRVLTVGGGFISVEFAgifNAYKPRGGKVTLCYRN 222
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 182 DRVLSTYyDRSFSDKVEEILSKNGIHLCLSESPKKY-LGRKKIEKIVTTSGTQYSMDMVVQAIGFLSNSpigeKELLRDV 260
Cdd:TIGR01423 223 NMILRGF-DSTLRKELTKQLRANGINIMTNENPAKVtLNADGSKHVTFESGKTLDVDVVMMAIGRVPRT----QTLQLDK 297
                         170       180
                  ....*....|....*....|....*....
gi 2090489534 261 SGAYLT-------NEYQQTNIKDIYAIGD 282
Cdd:TIGR01423 298 VGVELTkkgaiqvDEFSRTNVPNIYAIGD 326
PRK12770 PRK12770
putative glutamate synthase subunit beta; Provisional
3-285 4.68e-13

putative glutamate synthase subunit beta; Provisional


Pssm-ID: 237197 [Multi-domain]  Cd Length: 352  Bit Score: 70.02  E-value: 4.68e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534   3 KIVIIGSNHSGLAAARFLnlSDSNYEVILIDKKSEISylecGTSLF-----------IKGEVSNLEDL---FYQNRMTLN 68
Cdd:PRK12770   20 KVAIIGAGPAGLAAAGYL--ACLGYEVHVYDKLPEPG----GLMLFgipefripierVREGVKELEEAgvvFHTRTKVCC 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  69 SEIKKLFLETEVDKIDIQNKKIscVKKdgtrfsqeYDKVILATGS-KQIMLDIPGNNLANIFS------------IKNFP 135
Cdd:PRK12770   94 GEPLHEEEGDEFVERIVSLEEL--VKK--------YDAVLIATGTwKSRKLGIPGEDLPGVYSaleylfriraakLGYLP 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 136 NAKeifkaLDDSTIKKVGIIGAGYIGVEIA-EAIRKRGKEVYLFdvadrvlstyYDRSFSD----KVE-EILSKNGIHLC 209
Cdd:PRK12770  164 WEK-----VPPVEGKKVVVVGAGLTAVDAAlEAVLLGAEKVYLA----------YRRTINEapagKYEiERLIARGVEFL 228
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 210 LSESPKKYLGRKKIEKI--------------------VTTSGTQYSMDMVVQAIGFLSNSPIGEK----ELLRDvsGAYL 265
Cdd:PRK12770  229 ELVTPVRIIGEGRVEGVelakmrlgepdesgrprpvpIPGSEFVLEADTVVFAIGEIPTPPFAKEclgiELNRK--GEIV 306
                         330       340
                  ....*....|....*....|
gi 2090489534 266 TNEYQQTNIKDIYAIGDCAT 285
Cdd:PRK12770  307 VDEKHMTSREGVFAAGDVVT 326
PRK07251 PRK07251
FAD-containing oxidoreductase;
67-282 3.61e-12

FAD-containing oxidoreductase;


Pssm-ID: 180907 [Multi-domain]  Cd Length: 438  Bit Score: 67.85  E-value: 3.61e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  67 LNSEIKKLFLETEVDKID-----IQNKKISCVKKDgTRFSQEYDKVILATGSKQIMLDIPGnnlanIFSIKNFPNAKEIF 141
Cdd:PRK07251   78 LRGKNYAMLAGSGVDLYDaeahfVSNKVIEVQAGD-EKIELTAETIVINTGAVSNVLPIPG-----LADSKHVYDSTGIQ 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 142 KAldDSTIKKVGIIGAGYIGVEIAEAIRKRGKEVYLFDVADRVLSTYYDrSFSDKVEEILSKNGIHLCLSESPKKyLGRK 221
Cdd:PRK07251  152 SL--ETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEP-SVAALAKQYMEEDGITFLLNAHTTE-VKND 227
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2090489534 222 KIEKIVTTSGTQYSMDMVVQAIGFLSN-SPIG--EKELLRDVSGAYLTNEYQQTNIKDIYAIGD 282
Cdd:PRK07251  228 GDQVLVVTEDETYRFDALLYATGRKPNtEPLGleNTDIELTERGAIKVDDYCQTSVPGVFAVGD 291
PRK06416 PRK06416
dihydrolipoamide dehydrogenase; Reviewed
107-282 6.24e-12

dihydrolipoamide dehydrogenase; Reviewed


Pssm-ID: 235798 [Multi-domain]  Cd Length: 462  Bit Score: 67.09  E-value: 6.24e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 107 VILATGSKQImlDIPGnnlanifsIKnfPNAKEIF---KALDDSTI-KKVGIIGAGYIGVEIAEAIRKRGKEVYLFDVAD 182
Cdd:PRK06416  138 IILATGSRPR--ELPG--------IE--IDGRVIWtsdEALNLDEVpKSLVVIGGGYIGVEFASAYASLGAEVTIVEALP 205
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 183 RVLSTyYDRSFSDKVEEILSKNGIhlclsespKKYLGR--KKIEK-----IVTTSGTQYS----MDMVVQAIGFLSNSP- 250
Cdd:PRK06416  206 RILPG-EDKEISKLAERALKKRGI--------KIKTGAkaKKVEQtddgvTVTLEDGGKEetleADYVLVAVGRRPNTEn 276
                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 2090489534 251 IG-EK---ELLRdvsGAYLTNEYQQTNIKDIYAIGD 282
Cdd:PRK06416  277 LGlEElgvKTDR---GFIEVDEQLRTNVPNIYAIGD 309
PRK11749 PRK11749
dihydropyrimidine dehydrogenase subunit A; Provisional
2-285 1.70e-11

dihydropyrimidine dehydrogenase subunit A; Provisional


Pssm-ID: 236967 [Multi-domain]  Cd Length: 457  Bit Score: 65.97  E-value: 1.70e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534   2 EKIVIIGSNHSGLAAARFLNLSdsNYEVILIDKKSEIS-YLECGTSLFikgevsnledlfyqnRMTlnseikKLFLETEV 80
Cdd:PRK11749  141 KKVAVIGAGPAGLTAAHRLARK--GYDVTIFEARDKAGgLLRYGIPEF---------------RLP------KDIVDREV 197
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  81 DK-----IDIQ-NKKIscvkkdGTRFS-----QEYDKVILATG-SKQIMLDIPGNNLANIFSIKNFPNAKEIFKALDDST 148
Cdd:PRK11749  198 ERllklgVEIRtNTEV------GRDITldelrAGYDAVFIGTGaGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLP 271
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 149 I-KKVGIIGAGYIGVEIA-EAIRKRGKEVYLfdvadrvlstYYDRSFSD---KVEEILS--KNGIHLCLSESPKKYLGRK 221
Cdd:PRK11749  272 VgKRVVVIGGGNTAMDAArTAKRLGAESVTI----------VYRRGREEmpaSEEEVEHakEEGVEFEWLAAPVEILGDE 341
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 222 KIEKIVTT----------SGTQ--------YSM--DMVVQAIGFLSNSPI--GEKELLRDVSGAYLTNE-YQQTNIKDIY 278
Cdd:PRK11749  342 GRVTGVEFvrmelgepdaSGRRrvpiegseFTLpaDLVIKAIGQTPNPLIlsTTPGLELNRWGTIIADDeTGRTSLPGVF 421

                  ....*..
gi 2090489534 279 AIGDCAT 285
Cdd:PRK11749  422 AGGDIVT 428
PRK08010 PRK08010
pyridine nucleotide-disulfide oxidoreductase; Provisional
80-434 6.35e-11

pyridine nucleotide-disulfide oxidoreductase; Provisional


Pssm-ID: 181196 [Multi-domain]  Cd Length: 441  Bit Score: 63.88  E-value: 6.35e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  80 VDKID-----IQNKKISCVKKDGTRFSQEyDKVILATGSKQIMLDIPG-NNLANIFSIKNFPNAKEIFKALddstikkvG 153
Cdd:PRK08010   92 IDVIDgqaefINNHSLRVHRPEGNLEIHG-EKIFINTGAQTVVPPIPGiTTTPGVYDSTGLLNLKELPGHL--------G 162
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 154 IIGAGYIGVEIAEAIRKRGKEVYLFDVADRVLSTyYDRSFSDKVEEILSKNGIHLCLSESPKKyLGRKKIEKIVTTSGTQ 233
Cdd:PRK08010  163 ILGGGYIGVEFASMFANFGSKVTILEAASLFLPR-EDRDIADNIATILRDQGVDIILNAHVER-ISHHENQVQVHSEHAQ 240
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 234 YSMDMVVQAIG--------FLSNSPIGEKEllrdvSGAYLTNEYQQTNIKDIYAIGDcattfftsinrssvdfsISNALR 305
Cdd:PRK08010  241 LAVDALLIASGrqpataslHPENAGIAVNE-----RGAIVVDKYLHTTADNIWAMGD-----------------VTGGLQ 298
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 306 TAYIATQ--HINNQDFTPSGSQFTNGFSIFNYNFYAA------GLNLKTARLLSESIDYIEIEDFIRP-AFLRKNSRVKL 376
Cdd:PRK08010  299 FTYISLDdyRIVRDELLGEGKRSTDDRKNVPYSVFMTpplsrvGMTEEQARESGADIQVVTLPVAAIPrARVMNDTRGVL 378
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 377 RISFEKNTKRIVGVQ-LCSqeDLSGLLSMFSLAIEEQITLDKLKmlDYLF-HPSFSQPYN 434
Cdd:PRK08010  379 KAIVDNKTQRILGASlLCV--DSHEMINIVKMVMDAGLPYSILR--DQIFtHPSMSESLN 434
PTZ00318 PTZ00318
NADH dehydrogenase-like protein; Provisional
75-316 4.17e-10

NADH dehydrogenase-like protein; Provisional


Pssm-ID: 185553 [Multi-domain]  Cd Length: 424  Bit Score: 61.32  E-value: 4.17e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  75 FLETEVDKIDIQNKKISCVKKDGTR------FSQEYDKVILATGSKQIMLDIPGNNlANIFSIKNFPNAKEIFKALDDS- 147
Cdd:PTZ00318   79 YLRAVVYDVDFEEKRVKCGVVSKSNnanvntFSVPYDKLVVAHGARPNTFNIPGVE-ERAFFLKEVNHARGIRKRIVQCi 157
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 148 --------------TIKKVGIIGAGYIGVE----IAEAIRKRGKEVY----------LFDVADRVLSTyYDRSFSDKVEE 199
Cdd:PTZ00318  158 eraslpttsveerkRLLHFVVVGGGPTGVEfaaeLADFFRDDVRNLNpelveeckvtVLEAGSEVLGS-FDQALRKYGQR 236
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 200 ILSKNGIHLCLSESPKKYLGrkkiEKIVTTSGTQYSMDMVVQAIGFLSNSPIGEKELLRDVSGAYLTNEYQQT-NIKDIY 278
Cdd:PTZ00318  237 RLRRLGVDIRTKTAVKEVLD----KEVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDDHLRVkPIPNVF 312
                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 2090489534 279 AIGDCAttfftSINRSSVDFSISNALRT-AYIAtQHINN 316
Cdd:PTZ00318  313 ALGDCA-----ANEERPLPTLAQVASQQgVYLA-KEFNN 345
PRK14989 PRK14989
nitrite reductase subunit NirD; Provisional
3-285 8.54e-10

nitrite reductase subunit NirD; Provisional


Pssm-ID: 184951 [Multi-domain]  Cd Length: 847  Bit Score: 60.90  E-value: 8.54e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534   3 KIVIIGSnhsGLAAARFL-NLSD----SNYEVILIDKKSEISY----LECGTSLFIKGEVSNLEDLFYQNRMTlnseikK 73
Cdd:PRK14989    5 RLAIIGN---GMVGHRFIeDLLDkadaANFDITVFCEEPRIAYdrvhLSSYFSHHTAEELSLVREGFYEKHGI------K 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  74 LFLETEVDKIDIQNKKIscvkKDGTRFSQEYDKVILATGSKQIMLDIPGNNLANIFSIKNFPNAKEIFKALDDStiKKVG 153
Cdd:PRK14989   76 VLVGERAITINRQEKVI----HSSAGRTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRS--KRGA 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 154 IIGAGYIGVEIAEAIRKRGKEVYLFDVADRVLSTYYDRSFSDKVEEILSKNGIHLCLSESPKKYL--GRKKIEKIVTTSG 231
Cdd:PRK14989  150 VVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVqeGVEARKTMRFADG 229
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2090489534 232 TQYSMDMVVQAIGFLSNSPIGEK-ELLRDVSGAYLTNEYQQTNIKDIYAIGDCAT 285
Cdd:PRK14989  230 SELEVDFIVFSTGIRPQDKLATQcGLAVAPRGGIVINDSCQTSDPDIYAIGECAS 284
PLN02546 PLN02546
glutathione reductase
93-282 7.38e-09

glutathione reductase


Pssm-ID: 215301 [Multi-domain]  Cd Length: 558  Bit Score: 57.96  E-value: 7.38e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  93 VKKDGTRFSQEYdkVILATGSKQIMLDIPGNNLAnIFSiknfpNAkeifkALD-DSTIKKVGIIGAGYIGVEIAEAIRKR 171
Cdd:PLN02546  208 VDVDGKLYTARN--ILIAVGGRPFIPDIPGIEHA-IDS-----DA-----ALDlPSKPEKIAIVGGGYIALEFAGIFNGL 274
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 172 GKEVYLFDVADRVLSTyYDRSFSDKVEEILSKNGIHLCLSESPKKYL-GRKKIEKIVTTSGTQYSMDMVVQAIGFLSNSp 250
Cdd:PLN02546  275 KSDVHVFIRQKKVLRG-FDEEVRDFVAEQMSLRGIEFHTEESPQAIIkSADGSLSLKTNKGTVEGFSHVMFATGRKPNT- 352
                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 2090489534 251 igeKEL-LRDV------SGAYLTNEYQQTNIKDIYAIGD 282
Cdd:PLN02546  353 ---KNLgLEEVgvkmdkNGAIEVDEYSRTSVPSIWAVGD 388
PRK09754 PRK09754
phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
2-286 1.32e-08

phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional


Pssm-ID: 170080 [Multi-domain]  Cd Length: 396  Bit Score: 56.47  E-value: 1.32e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534   2 EKIVIIGSNHSGLAAARFLNLSDSNYEVILIDKKSEISYLE--CGTSLFIKGEV---SNLEDLFYQNrmtlnseiKKLFL 76
Cdd:PRK09754    4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERppLSKSMLLEDSPqlqQVLPANWWQE--------NNVHL 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  77 ETEVDKIDIQNKKISCVKKDGTRFsqEYDKVILATGSKQ---IMLDIPGNNlanIFSIKNFPNAKEIFKALDDStiKKVG 153
Cdd:PRK09754   76 HSGVTIKTLGRDTRELVLTNGESW--HWDQLFIATGAAArplPLLDALGER---CFTLRHAGDAARLREVLQPE--RSVV 148
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 154 IIGAGYIGVEIAEAIRKRGKEVYLFDVADRVLSTYYDRSFSDKVEEILSKNGIHLCLSESPKKYLGRKKIEKIVTTsGTQ 233
Cdd:PRK09754  149 IVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQS-GET 227
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2090489534 234 YSMDMVVQAIGFLSNSPIGEKELLrDVSGAYLTNEYQQTNIKDIYAIGDCATT 286
Cdd:PRK09754  228 LQADVVIYGIGISANDQLAREANL-DTANGIVIDEACRTCDPAIFAGGDVAIT 279
PRK12831 PRK12831
putative oxidoreductase; Provisional
2-291 2.20e-08

putative oxidoreductase; Provisional


Pssm-ID: 183780 [Multi-domain]  Cd Length: 464  Bit Score: 56.18  E-value: 2.20e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534   2 EKIVIIGSNHSGLAAARflNLSDSNYEVILIDKKSEIS-YLECGTSLF-------IKGEVSNledlfyqnrmtlnseIKK 73
Cdd:PRK12831  141 KKVAVIGSGPAGLTCAG--DLAKMGYDVTIFEALHEPGgVLVYGIPEFrlpketvVKKEIEN---------------IKK 203
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  74 LFLETEVDKIDIQNKKISCVKKDGTrfsqeYDKVILATGSKQIM-LDIPGNNLANIFSIKNFPNAKEIFKALD---DSTI 149
Cdd:PRK12831  204 LGVKIETNVVVGKTVTIDELLEEEG-----FDAVFIGSGAGLPKfMGIPGENLNGVFSANEFLTRVNLMKAYKpeyDTPI 278
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 150 ---KKVGIIGAGYIGVEIAEAIRKRGKEVYLFdvadrvlstyYDRSFSD---KVEEI--LSKNGIHLCLSESPKKYLGRK 221
Cdd:PRK12831  279 kvgKKVAVVGGGNVAMDAARTALRLGAEVHIV----------YRRSEEElpaRVEEVhhAKEEGVIFDLLTNPVEILGDE 348
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 222 ----------KIE----------KIVTTSGTQYSM--DMVVQAIGFLSNSPIGE--KELLRDVSGAYLTNEYQ-QTNIKD 276
Cdd:PRK12831  349 ngwvkgmkciKMElgepdasgrrRPVEIEGSEFVLevDTVIMSLGTSPNPLISSttKGLKINKRGCIVADEETgLTSKEG 428
                         330
                  ....*....|....*
gi 2090489534 277 IYAIGDCATTFFTSI 291
Cdd:PRK12831  429 VFAGGDAVTGAATVI 443
PRK06327 PRK06327
dihydrolipoamide dehydrogenase; Validated
105-284 1.93e-07

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235779 [Multi-domain]  Cd Length: 475  Bit Score: 53.01  E-value: 1.93e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 105 DKVILATGSKQIMLdiPGnnlanifsiknFPNAKEIF----KALD-DSTIKKVGIIGAGYIGVEIAEAIRKRGKEVYLFD 179
Cdd:PRK06327  147 KHVIIATGSEPRHL--PG-----------VPFDNKIIldntGALNfTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILE 213
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 180 VADRVLSTyYDRSFSDKVEEILSKNGIHLCLSESPKKYlgrKKIEKIVTTSGTQ-------YSMDMVVQAIGFLSNSP-I 251
Cdd:PRK06327  214 ALPAFLAA-ADEQVAKEAAKAFTKQGLDIHLGVKIGEI---KTGGKGVSVAYTDadgeaqtLEVDKLIVSIGRVPNTDgL 289
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 2090489534 252 GEKE--LLRDVSGAYLTNEYQQTNIKDIYAIGDCA 284
Cdd:PRK06327  290 GLEAvgLKLDERGFIPVDDHCRTNVPNVYAIGDVV 324
PRK12778 PRK12778
bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate ...
3-291 2.23e-07

bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase;


Pssm-ID: 237200 [Multi-domain]  Cd Length: 752  Bit Score: 53.21  E-value: 2.23e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534   3 KIVIIGSNHSGLAAARflNLSDSNYEVILIDKKSEIS-YLECGTSLF------IKGEVSNLedlfyqnrmtlnseiKKLF 75
Cdd:PRK12778  433 KVAVIGSGPAGLSFAG--DLAKRGYDVTVFEALHEIGgVLKYGIPEFrlpkkiVDVEIENL---------------KKLG 495
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  76 LETEVDKIDIQNKKISCVKKDGtrfsqeYDKVILATGSK-QIMLDIPGNNLANIFSIKNFPNAKEIFKALDDSTI----- 149
Cdd:PRK12778  496 VKFETDVIVGKTITIEELEEEG------FKGIFIASGAGlPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDtpikf 569
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 150 -KKVGIIGAGYIGVEIAEAIRKRGkevylfdvADRVLsTYYDRSFSD---KVEEI--LSKNGIHLCLSESPKKYLG---- 219
Cdd:PRK12778  570 gKKVAVVGGGNTAMDSARTAKRLG--------AERVT-IVYRRSEEEmpaRLEEVkhAKEEGIEFLTLHNPIEYLAdekg 640
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 220 --------------------RKKIEkiVTTSGTQYSMDMVVQAIGFLSN----SPIGEKELLRdvSGAYLTNEYQQTNIK 275
Cdd:PRK12778  641 wvkqvvlqkmelgepdasgrRRPVA--IPGSTFTVDVDLVIVSVGVSPNplvpSSIPGLELNR--KGTIVVDEEMQSSIP 716
                         330
                  ....*....|....*.
gi 2090489534 276 DIYAIGDCATTFFTSI 291
Cdd:PRK12778  717 GIYAGGDIVRGGATVI 732
TGR TIGR01438
thioredoxin and glutathione reductase selenoprotein; This homodimeric, FAD-containing member ...
89-284 6.08e-07

thioredoxin and glutathione reductase selenoprotein; This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.


Pssm-ID: 273624 [Multi-domain]  Cd Length: 484  Bit Score: 51.78  E-value: 6.08e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  89 KISCVKKDGTRFSQEYDKVILATGSKQIMLDIPGNNLANIFSIKNFPNAKEIFKALddstikkvgIIGAGYIGVEIAEAI 168
Cdd:TIGR01438 129 RIKATNKKGKEKIYSAERFLIATGERPRYPGIPGAKELCITSDDLFSLPYCPGKTL---------VVGASYVALECAGFL 199
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 169 RKRGKEVylfDVADR-VLSTYYDRSFSDKVEEILSKNGIHLCLSESPKKYL---GRKKIEKIVTTSGTQYSMDMVVQAIG 244
Cdd:TIGR01438 200 AGIGLDV---TVMVRsILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEqieAKVLVEFTDSTNGIEEEYDTVLLAIG 276
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 2090489534 245 FLSNS-PIGEKEL---LRDVSGAYLTNEYQQTNIKDIYAIGDCA 284
Cdd:TIGR01438 277 RDACTrKLNLENVgvkINKKTGKIPADEEEQTNVPYIYAVGDIL 320
Pyr_redox_3 pfam13738
Pyridine nucleotide-disulphide oxidoreductase;
82-281 7.12e-07

Pyridine nucleotide-disulphide oxidoreductase;


Pssm-ID: 404603 [Multi-domain]  Cd Length: 296  Bit Score: 50.69  E-value: 7.12e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  82 KIDIQ-NKKISCVKKDGTRF-----SQEY--DKVILATGskqimldipgnnlanIFSIKNFPNAKEI------FKALDDS 147
Cdd:pfam13738  89 ELPINlFEEVTSVKKEDDGFvvttsKGTYqaRYVIIATG---------------EFDFPNKLGVPELpkhysyVKDFHPY 153
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 148 TIKKVGIIGAGYIGVEIAEAIRKRGKEVYLFDVADRVLSTYYDRSFSDK------VEEILSKNGIhlclsespkKYLGRK 221
Cdd:pfam13738 154 AGQKVVVIGGYNSAVDAALELVRKGARVTVLYRGSEWEDRDSDPSYSLSpdtlnrLEELVKNGKI---------KAHFNA 224
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2090489534 222 KIEKI--------VTTS-GTQY-SMDMVVQAIGFLSN-SPIGEKELLRDVSG-AYLTNEYQQTNIKDIYAIG 281
Cdd:pfam13738 225 EVKEItevdvsykVHTEdGRKVtSNDDPILATGYHPDlSFLKKGLFELDEDGrPVLTEETESTNVPGLFLAG 296
PRK13984 PRK13984
putative oxidoreductase; Provisional
3-283 9.36e-07

putative oxidoreductase; Provisional


Pssm-ID: 172486 [Multi-domain]  Cd Length: 604  Bit Score: 51.31  E-value: 9.36e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534   3 KIVIIGSNHSGLAAARFLnlSDSNYEVILIDKKSEisylecgtslfiKGEVSNLEDLFYQnrmtLNSEIkklfLETEVDK 82
Cdd:PRK13984  285 KVAIVGSGPAGLSAAYFL--ATMGYEVTVYESLSK------------PGGVMRYGIPSYR----LPDEA----LDKDIAF 342
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  83 IDIQNKKISC---VKKDGT--RFSQEYDKVILATG-SKQIMLDIPGNNLANIfsIKNFPNAKEIFKALDDSTIK-----K 151
Cdd:PRK13984  343 IEALGVKIHLntrVGKDIPleELREKHDAVFLSTGfTLGRSTRIPGTDHPDV--IQALPLLREIRDYLRGEGPKpkiprS 420
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 152 VGIIGAGYIGVEIAEAIRKRGKEVYlFDVADRVLStyYDRSFSD---KVEEIL--SKNGIHLCLSESPKKYL---GR--- 220
Cdd:PRK13984  421 LVVIGGGNVAMDIARSMARLQKMEY-GEVNVKVTS--LERTFEEmpaDMEEIEegLEEGVVIYPGWGPMEVVienDKvkg 497
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 221 ---KKIEKIVTTSG-----------TQYSMDMVVQAIGFLSN-SPIGE--KELLRDVSGAYLTNEYQQTNIKDIYAIGDC 283
Cdd:PRK13984  498 vkfKKCVEVFDEEGrfnpkfdesdqIIVEADMVVEAIGQAPDySYLPEelKSKLEFVRGRILTNEYGQTSIPWLFAGGDI 577
gltD PRK12810
glutamate synthase subunit beta; Reviewed
2-283 1.20e-06

glutamate synthase subunit beta; Reviewed


Pssm-ID: 237213 [Multi-domain]  Cd Length: 471  Bit Score: 50.55  E-value: 1.20e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534   2 EKIVIIGSNHSGLAAARFLNLSdsNYEVILIDKKSEIS-YLECGTSLFiKgevsnLEDLFYQNRMTLNSE--IKkLFLET 78
Cdd:PRK12810  144 KKVAVVGSGPAGLAAADQLARA--GHKVTVFERADRIGgLLRYGIPDF-K-----LEKEVIDRRIELMEAegIE-FRTNV 214
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  79 EVDKiDIQNKKIScvkkdgtrfsQEYDKVILATGSKQIM-LDIPGNNLANIFSIKNF--PNAKEIFKALDDSTI----KK 151
Cdd:PRK12810  215 EVGK-DITAEELL----------AEYDAVFLGTGAYKPRdLGIPGRDLDGVHFAMDFliQNTRRVLGDETEPFIsakgKH 283
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 152 VGIIGAGYIGVE-IAEAIRKRGKEVYLFDVADR----------------VLSTYY------DRSFSDKVEEILSKNG--- 205
Cdd:PRK12810  284 VVVIGGGDTGMDcVGTAIRQGAKSVTQRDIMPMppsrrnknnpwpywpmKLEVSNaheegvEREFNVQTKEFEGENGkvt 363
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 206 -IHLCLSEspkkyLGRKKIEKIvttSGTQYSM--DMVVQAIGFLSNspigEKELL------RDVSG--AYLTNEYqQTNI 274
Cdd:PRK12810  364 gVKVVRTE-----LGEGDFEPV---EGSEFVLpaDLVLLAMGFTGP----EAGLLaqfgveLDERGrvAAPDNAY-QTSN 430

                  ....*....
gi 2090489534 275 KDIYAIGDC 283
Cdd:PRK12810  431 PKVFAAGDM 439
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
3-114 6.12e-06

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 48.32  E-value: 6.12e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534   3 KIVIIGSNHSGLAAArfLNLSDSNYEVILIDKKSEI-----------SYLECGTSLfikgevsnLEDLFyqNRMTLNSEI 71
Cdd:COG1148   142 RALVIGGGIAGMTAA--LELAEQGYEVYLVEKEPELggraaqlhktfPGLDCPQCI--------LEPLI--AEVEANPNI 209
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2090489534  72 KkLFLETEVDKID--IQNKKISCVKKDGTRFSQEYDKVILATGSK 114
Cdd:COG1148   210 T-VYTGAEVEEVSgyVGNFTVTIKKGPREEIEIEVGAIVLATGFK 253
PRK13748 PRK13748
putative mercuric reductase; Provisional
94-283 9.93e-06

putative mercuric reductase; Provisional


Pssm-ID: 184298 [Multi-domain]  Cd Length: 561  Bit Score: 47.84  E-value: 9.93e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  94 KKDGTRFSQEYDKVILATGSKQIMLDIPGnnlanifsIKNFP--NAKEifkALDDSTI-KKVGIIGAGYIGVEIAEAIRK 170
Cdd:PRK13748  223 LNDGGERVVAFDRCLIATGASPAVPPIPG--------LKETPywTSTE---ALVSDTIpERLAVIGSSVVALELAQAFAR 291
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 171 RGKEVYLfdVADRVLSTYYDRSFSDKVEEILSKNGIHLcLSESPKKYLGRKKIEKIVTTSGTQYSMDMVVQAIGFLSNSP 250
Cdd:PRK13748  292 LGSKVTI--LARSTLFFREDPAIGEAVTAAFRAEGIEV-LEHTQASQVAHVDGEFVLTTGHGELRADKLLVATGRAPNTR 368
                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 2090489534 251 IGEKE---LLRDVSGAYLTNEYQQTNIKDIYAIGDC 283
Cdd:PRK13748  369 SLALDaagVTVNAQGAIVIDQGMRTSVPHIYAAGDC 404
FadB COG1250
3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]; 3-hydroxyacyl-CoA ...
148-185 1.33e-05

3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]; 3-hydroxyacyl-CoA dehydrogenase is part of the Pathway/BioSystem: Fatty acid biosynthesis


Pssm-ID: 440862 [Multi-domain]  Cd Length: 281  Bit Score: 46.64  E-value: 1.33e-05
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 2090489534 148 TIKKVGIIGAGYIGVEIAEAIRKRGKEVYLFDVADRVL 185
Cdd:COG1250     1 EIKKVAVIGAGTMGAGIAAVFANAGYEVVLLDISPEAL 38
Pyr_redox_3 pfam13738
Pyridine nucleotide-disulphide oxidoreductase;
1-112 4.20e-05

Pyridine nucleotide-disulphide oxidoreductase;


Pssm-ID: 404603 [Multi-domain]  Cd Length: 296  Bit Score: 45.29  E-value: 4.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534   1 MEKIVIIGSNHSGLAAArfLNLSDSNYEVILIDKKSEISYLECGTSLFIKGEVSN-LEDLFYQNRMtlnseikKLFLETE 79
Cdd:pfam13738 155 GQKVVVIGGYNSAVDAA--LELVRKGARVTVLYRGSEWEDRDSDPSYSLSPDTLNrLEELVKNGKI-------KAHFNAE 225
                          90       100       110
                  ....*....|....*....|....*....|...
gi 2090489534  80 VDKIDIQNKKISCVKKDGTRFsQEYDKVILATG 112
Cdd:pfam13738 226 VKEITEVDVSYKVHTEDGRKV-TSNDDPILATG 257
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
96-262 6.55e-05

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 44.85  E-value: 6.55e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534  96 DGTRFsqEYDKVILATG--SKQIMLDIPGNNLaniFSIK-----NFPNAKEifkaLDDstiKKVGIIGAGYIGVEIAEAI 168
Cdd:COG2072   123 DGETL--TARFVVVATGplSRPKIPDIPGLED---FAGEqlhsaDWRNPVD----LAG---KRVLVVGTGASAVQIAPEL 190
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 169 RKRGKEVYLF-----------DVAD-----------------------RVLSTYYDRSFSDKVEEILSKN----GIHLCL 210
Cdd:COG2072   191 ARVAAHVTVFqrtppwvlprpNYDPergrpanylgleappalnrrdarAWLRRLLRAQVKDPELGLLTPDyppgCKRPLL 270
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2090489534 211 SESPKKYLGRKKIE------------KIVTTSGTQYSMDMVVQAIGFLSNSPIGEKELLRDVSG 262
Cdd:COG2072   271 STDYYEALRRGNVElvtggieritedGVVFADGTEHEVDVIVWATGFRADLPWLAPLDVRGRDG 334
PTZ00052 PTZ00052
thioredoxin reductase; Provisional
107-284 2.68e-04

thioredoxin reductase; Provisional


Pssm-ID: 185416 [Multi-domain]  Cd Length: 499  Bit Score: 43.27  E-value: 2.68e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 107 VILATGSK-QIMLDIPG-NNLA----NIFSIKNFPNakeifkalddstikKVGIIGAGYIGVEIAEAIRKRGkevylFDV 180
Cdd:PTZ00052  148 ILIATGGRpSIPEDVPGaKEYSitsdDIFSLSKDPG--------------KTLIVGASYIGLETAGFLNELG-----FDV 208
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 181 ADRVLSTY---YDRSFSDKVEEILSKNGIHLCLSESPKKYlgrKKIE---KIVTTSGTQYSMDMVVQAIG------FLSN 248
Cdd:PTZ00052  209 TVAVRSIPlrgFDRQCSEKVVEYMKEQGTLFLEGVVPINI---EKMDdkiKVLFSDGTTELFDTVLYATGrkpdikGLNL 285
                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 2090489534 249 SPIGEKelLRDVSGAYLTNEyqQTNIKDIYAIGDCA 284
Cdd:PTZ00052  286 NAIGVH--VNKSNKIIAPND--CTNIPNIFAVGDVV 317
NAD_binding_8 pfam13450
NAD(P)-binding Rossmann-like domain;
6-60 9.64e-04

NAD(P)-binding Rossmann-like domain;


Pssm-ID: 433218 [Multi-domain]  Cd Length: 67  Bit Score: 37.51  E-value: 9.64e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2090489534   6 IIGSNHSGLAAARFlnLSDSNYEVILIDKKSEI-----SY------LECGTSLFIKGEVSNLEDLF 60
Cdd:pfam13450   1 IVGAGLAGLVAAAL--LAKRGFRVLVLEKRDRLggnaySYrvpgyvFDYGAHIFHGSDEPNVRDLL 64
PLN02545 PLN02545
3-hydroxybutyryl-CoA dehydrogenase
147-243 1.26e-03

3-hydroxybutyryl-CoA dehydrogenase


Pssm-ID: 215300 [Multi-domain]  Cd Length: 295  Bit Score: 40.48  E-value: 1.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 147 STIKKVGIIGAGYIGVEIAEAIRKRGKEVYLFDVADRVLSTYYDrSFSDKVEEILSKNGIhlcLSESPKKYLGRkkiekI 226
Cdd:PLN02545    2 AEIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLD-SISSSLARLVKKGKM---SQEEADATLGR-----I 72
                          90
                  ....*....|....*....
gi 2090489534 227 VTTSGTQ--YSMDMVVQAI 243
Cdd:PLN02545   73 RCTTNLEelRDADFIIEAI 91
PRK05808 PRK05808
3-hydroxybutyryl-CoA dehydrogenase; Validated
148-182 4.07e-03

3-hydroxybutyryl-CoA dehydrogenase; Validated


Pssm-ID: 180269 [Multi-domain]  Cd Length: 282  Bit Score: 38.79  E-value: 4.07e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 2090489534 148 TIKKVGIIGAGYIGVEIAEAIRKRGKEVYLFDVAD 182
Cdd:PRK05808    2 GIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36
TyrA COG0287
Prephenate dehydrogenase [Amino acid transport and metabolism]; Prephenate dehydrogenase is ...
149-199 4.69e-03

Prephenate dehydrogenase [Amino acid transport and metabolism]; Prephenate dehydrogenase is part of the Pathway/BioSystem: Aromatic amino acid biosynthesis


Pssm-ID: 440056 [Multi-domain]  Cd Length: 278  Bit Score: 38.57  E-value: 4.69e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2090489534 149 IKKVGIIGAGYIGVEIAEAIRKRG--KEVYLFDVADRVLSTYYDRSFSDKVEE 199
Cdd:COG0287     1 FMRIAIIGLGLIGGSLALALKRAGlaHEVVGVDRSPETLERALELGVIDRAAT 53
3HCDH_N pfam02737
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; This family also includes lambda ...
151-185 7.21e-03

3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; This family also includes lambda crystallin.


Pssm-ID: 397037 [Multi-domain]  Cd Length: 180  Bit Score: 37.52  E-value: 7.21e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 2090489534 151 KVGIIGAGYIGVEIAEAIRKRGKEVYLFDVADRVL 185
Cdd:pfam02737   1 KVAVIGAGTMGAGIAQVFALAGLEVVLVDISEEAL 35
MurD COG0771
UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell wall/membrane/envelope biogenesis]; ...
150-243 7.58e-03

UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramoylalanine-D-glutamate ligase is part of the Pathway/BioSystem: Mureine biosynthesis


Pssm-ID: 440534 [Multi-domain]  Cd Length: 445  Bit Score: 38.52  E-value: 7.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 150 KKVGIIGAGYIGVEIAEAIRKRGKEVYLFDvadrvlstyyDRSFSDKVEEILSKNGIHLCLSESPKKYLgrKKIEKIVTT 229
Cdd:COG0771     5 KKVLVLGLGKSGLAAARLLAKLGAEVTVSD----------DRPAPELAAAELEAPGVEVVLGEHPEELL--DGADLVVKS 72
                          90
                  ....*....|....
gi 2090489534 230 SGTQYSMDMVVQAI 243
Cdd:COG0771    73 PGIPPDHPLLKAAR 86
NAD_bind_Glutamyl_tRNA_reduct cd05213
NADP-binding domain of glutamyl-tRNA reductase; Glutamyl-tRNA reductase catalyzes the ...
137-243 9.01e-03

NADP-binding domain of glutamyl-tRNA reductase; Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts.


Pssm-ID: 133452 [Multi-domain]  Cd Length: 311  Bit Score: 38.02  E-value: 9.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090489534 137 AKEIFKALDDstiKKVGIIGAGYIGVEIAEAI-RKRGKEVYlfdVADRvlsTYydrsfsDKVEEILSKNGIHLCLSESPK 215
Cdd:cd05213   169 AEKIFGNLKG---KKVLVIGAGEMGELAAKHLaAKGVAEIT---IANR---TY------ERAEELAKELGGNAVPLDELL 233
                          90       100
                  ....*....|....*....|....*...
gi 2090489534 216 KYLGRKKIekIVTTSGTQYSMDMVVQAI 243
Cdd:cd05213   234 ELLNEADV--VISATGAPHYAKIVERAM 259
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH