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Conserved domains on  [gi|577725267|gb|JAB94271|]
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putative G-protein coupled receptor Mth-like 9 [Ceratitis capitata]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Mth_Ecto super family cl11637
The ectodomain of Methuselah (Mth); Mth mutants have a 35% increase in average lifespan and ...
37-214 1.49e-60

The ectodomain of Methuselah (Mth); Mth mutants have a 35% increase in average lifespan and increased resistance to several forms of stress, including heat, starvation, and oxidative damage; The protein affected by this mutation is related to G protein-coupled receptors of the secretin receptor family; Mth, like secretin receptor family members, has a large N-terminal ectodomain, which may constitute the ligand binding site.


The actual alignment was detected with superfamily member pfam06652:

Pssm-ID: 448329  Cd Length: 179  Bit Score: 197.48  E-value: 1.49e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577725267   37 CPYAQTVNISDGLRLKDGSYSYAGLLIPANMTAQYNFKVV-DGVLTNAPPHIRGCACRQRPCITFCCPPEQVFDEQKRSC 115
Cdd:pfam06652   1 CDFFDTVNITGSQRLPNGSYLYEGLVIPAELTGEYDFRILeDGSRVPVPKHLRGCVCKLKPCIRFCCPHGQIYDNGEREC 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577725267  116 MPhasslNAEQQRARYA-HIEVTdSADGSVRVVNITDLFVMRYE--VGCSRKYIDKSDDIFWKWDLYANGSLS--SLDKI 190
Cdd:pfam06652  81 SD-----DHEEELTWPDpHLNVT-LENGSVVEVHILTDFVVQRElpLPCDEMFSLDKEDNYWQWTLFENGSLLrhFDRVH 154
                         170       180
                  ....*....|....*....|....*
gi 577725267  191 WDTDQYCLTPLEHKK-VWSLVPLTC 214
Cdd:pfam06652 155 LSKQEYCLQPLEFNDsDIRLQPHNC 179
7tm_GPCRs super family cl28897
seven-transmembrane G protein-coupled receptor superfamily; This hierarchical evolutionary ...
224-488 1.13e-23

seven-transmembrane G protein-coupled receptor superfamily; This hierarchical evolutionary model represents the seven-transmembrane (7TM) receptors, often referred to as G protein-coupled receptors (GPCRs), which transmit physiological signals from the outside of the cell to the inside via G proteins. GPCRs constitute the largest known superfamily of transmembrane receptors across the three kingdoms of life that respond to a wide variety of extracellular stimuli including peptides, lipids, neurotransmitters, amino acids, hormones, and sensory stimuli such as light, smell and taste. All GPCRs share a common structural architecture comprising of seven-transmembrane (TM) alpha-helices interconnected by three extracellular and three intracellular loops. A general feature of GPCR signaling is agonist-induced conformational changes in the receptors, leading to activation of the heterotrimeric G proteins, which consist of the guanine nucleotide-binding G-alpha subunit and the dimeric G-beta-gamma subunits. The activated G proteins then bind to and activate numerous downstream effector proteins, which generate second messengers that mediate a broad range of cellular and physiological processes. However, some 7TM receptors, such as the type 1 microbial rhodopsins, do not activate G proteins. Based on sequence similarity, GPCRs can be divided into six major classes: class A (the rhodopsin-like family), class B (the Methuselah-like, adhesion and secretin-like receptor family), class C (the metabotropic glutamate receptor family), class D (the fungal mating pheromone receptors), class E (the cAMP receptor family), and class F (the frizzled/smoothened receptor family). Nearly 800 human GPCR genes have been identified and are involved essentially in all major physiological processes. Approximately 40% of clinically marketed drugs mediate their effects through modulation of GPCR function for the treatment of a variety of human diseases including bacterial infections.


The actual alignment was detected with superfamily member cd15039:

Pssm-ID: 475119 [Multi-domain]  Cd Length: 270  Bit Score: 100.38  E-value: 1.13e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577725267 224 WIYVICLFIATLVYAFILLTLVSIRAVRNGgYGESLIFHLASTIigLAALTYLALRSRLELSETACRNIGFIAYVFLMFS 303
Cdd:cd15039    6 ILTLIGLIISLVFLLLTLAVYALLPELRNL-HGKCLMCLVLSLF--VAYLLLLIGQLLSSGDSTLCVALGILLHFFFLAA 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577725267 304 FFLLTIISWNFWYNFKTRRL-----SSWKRKIIYML-AFGLAVgLRFLLKFIQD-SDVYQPLKPGIGDAFCWFDvRLWGI 376
Cdd:cd15039   83 FFWLNVMSFDIWRTFRGKRSsssrsKERKRFLRYSLyAWGVPL-LLVAVTIIVDfSPNTDSLRPGYGEGSCWIS-NPWAL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577725267 377 LLYYYIPILICLGFSMLLYLRTYIIIWNLSDDIINVAGYDIKLiKAHFYAFFAYLLGVSCVWLRELVVYLTFRWRGQYYI 456
Cdd:cd15039  161 LLYFYGPVALLLLFNIILFILTAIRIRKVKKETAKVQSRLRSD-KQRFRLYLKLFVIMGVTWILEIISWFVGGSSVLWYI 239
                        250       260       270
                 ....*....|....*....|....*....|..
gi 577725267 457 IDFVtgVCIFGLSIAGLFFLlyKNPLVRLWWH 488
Cdd:cd15039  240 FDIL--NGLQGVFIFLIFVC--KRRVLRLLKK 267
 
Name Accession Description Interval E-value
Methuselah_N pfam06652
Methuselah N-terminus; This family represents the N-terminal region of the Drosophila specific ...
37-214 1.49e-60

Methuselah N-terminus; This family represents the N-terminal region of the Drosophila specific Methuselah protein. Drosophila Methuselah (Mth) mutants have a 35% increase in average lifespan and increased resistance to several forms of stress, including heat, starvation, and oxidative damage. The protein affected by this mutation is related to G protein-coupled receptors of the secretin receptor family. Mth, like secretin receptor family members, has a large N-terminal ectodomain, which may constitute the ligand binding site. This family is found in conjunction with pfam00002.


Pssm-ID: 429053  Cd Length: 179  Bit Score: 197.48  E-value: 1.49e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577725267   37 CPYAQTVNISDGLRLKDGSYSYAGLLIPANMTAQYNFKVV-DGVLTNAPPHIRGCACRQRPCITFCCPPEQVFDEQKRSC 115
Cdd:pfam06652   1 CDFFDTVNITGSQRLPNGSYLYEGLVIPAELTGEYDFRILeDGSRVPVPKHLRGCVCKLKPCIRFCCPHGQIYDNGEREC 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577725267  116 MPhasslNAEQQRARYA-HIEVTdSADGSVRVVNITDLFVMRYE--VGCSRKYIDKSDDIFWKWDLYANGSLS--SLDKI 190
Cdd:pfam06652  81 SD-----DHEEELTWPDpHLNVT-LENGSVVEVHILTDFVVQRElpLPCDEMFSLDKEDNYWQWTLFENGSLLrhFDRVH 154
                         170       180
                  ....*....|....*....|....*
gi 577725267  191 WDTDQYCLTPLEHKK-VWSLVPLTC 214
Cdd:pfam06652 155 LSKQEYCLQPLEFNDsDIRLQPHNC 179
Mth_Ecto cd00251
The ectodomain of Methuselah (Mth); Mth mutants have a 35% increase in average lifespan and ...
37-214 5.71e-44

The ectodomain of Methuselah (Mth); Mth mutants have a 35% increase in average lifespan and increased resistance to several forms of stress, including heat, starvation, and oxidative damage; The protein affected by this mutation is related to G protein-coupled receptors of the secretin receptor family; Mth, like secretin receptor family members, has a large N-terminal ectodomain, which may constitute the ligand binding site.


Pssm-ID: 119403  Cd Length: 176  Bit Score: 153.60  E-value: 5.71e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577725267  37 CPYAQTVNISDGLRLKDGSYSYAGLLIPANMTAQYNFKVV-DGVLTNAPPHIRGCACRQRPCITFCCPPEQVFDeqKRSC 115
Cdd:cd00251    1 CDFFDTVNITGSQRFPNGSYLYEGIIIPAHLTGEYDYVILpDGSREPVPEHLRGCVCKLKPCIRFCCPHGKIMD--NGQC 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577725267 116 MPhasslnAEQQRARY-AHIEVTdSADGSVRVVNITDLFVMRYE--VGCSRKYIDKSDDIFWKWDLYANGSLSSLD--KI 190
Cdd:cd00251   79 SD------TVQEELRYdPYVNIT-LADGSVDLRHVLTEFIVQGDlpLPCESMYELDRENEFDEWTLFENGTLLRHYdsRL 151
                        170       180
                 ....*....|....*....|....*
gi 577725267 191 WDTDQYCLTPLEHK-KVWSLVPLTC 214
Cdd:cd00251  152 LSKQEYCLQPRNFNnESIELVPHNC 176
7tmB3_Methuselah-like cd15039
Methuselah-like subfamily B3, member of the class B family of seven-transmembrane G ...
224-488 1.13e-23

Methuselah-like subfamily B3, member of the class B family of seven-transmembrane G protein-coupled receptors; The subfamily B3 of class B GPCRs consists of Methuselah (Mth) and its closely related proteins found in bilateria. Mth was originally identified in Drosophila as a GPCR affecting stress resistance and aging. In addition to the seven transmembrane helices, Mth contains an N-terminal extracellular domain involved in ligand binding, and a third intracellular loop (IC3) required for the specificity of G-protein coupling. Drosophila Mth mutants showed an increase in average lifespan by 35% and greater resistance to a variety of stress factors, including starvation, high temperature, and paraquat-induced oxidative toxicity. Moreover, mutations in two endogenous peptide ligands of Methuselah, Stunted A and B, showed an increased in lifespan and resistance to oxidative stress induced by dietary paraquat. These results strongly suggest that the Stunted-Methuselah system plays important roles in stress response and aging.


Pssm-ID: 410632 [Multi-domain]  Cd Length: 270  Bit Score: 100.38  E-value: 1.13e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577725267 224 WIYVICLFIATLVYAFILLTLVSIRAVRNGgYGESLIFHLASTIigLAALTYLALRSRLELSETACRNIGFIAYVFLMFS 303
Cdd:cd15039    6 ILTLIGLIISLVFLLLTLAVYALLPELRNL-HGKCLMCLVLSLF--VAYLLLLIGQLLSSGDSTLCVALGILLHFFFLAA 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577725267 304 FFLLTIISWNFWYNFKTRRL-----SSWKRKIIYML-AFGLAVgLRFLLKFIQD-SDVYQPLKPGIGDAFCWFDvRLWGI 376
Cdd:cd15039   83 FFWLNVMSFDIWRTFRGKRSsssrsKERKRFLRYSLyAWGVPL-LLVAVTIIVDfSPNTDSLRPGYGEGSCWIS-NPWAL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577725267 377 LLYYYIPILICLGFSMLLYLRTYIIIWNLSDDIINVAGYDIKLiKAHFYAFFAYLLGVSCVWLRELVVYLTFRWRGQYYI 456
Cdd:cd15039  161 LLYFYGPVALLLLFNIILFILTAIRIRKVKKETAKVQSRLRSD-KQRFRLYLKLFVIMGVTWILEIISWFVGGSSVLWYI 239
                        250       260       270
                 ....*....|....*....|....*....|..
gi 577725267 457 IDFVtgVCIFGLSIAGLFFLlyKNPLVRLWWH 488
Cdd:cd15039  240 FDIL--NGLQGVFIFLIFVC--KRRVLRLLKK 267
 
Name Accession Description Interval E-value
Methuselah_N pfam06652
Methuselah N-terminus; This family represents the N-terminal region of the Drosophila specific ...
37-214 1.49e-60

Methuselah N-terminus; This family represents the N-terminal region of the Drosophila specific Methuselah protein. Drosophila Methuselah (Mth) mutants have a 35% increase in average lifespan and increased resistance to several forms of stress, including heat, starvation, and oxidative damage. The protein affected by this mutation is related to G protein-coupled receptors of the secretin receptor family. Mth, like secretin receptor family members, has a large N-terminal ectodomain, which may constitute the ligand binding site. This family is found in conjunction with pfam00002.


Pssm-ID: 429053  Cd Length: 179  Bit Score: 197.48  E-value: 1.49e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577725267   37 CPYAQTVNISDGLRLKDGSYSYAGLLIPANMTAQYNFKVV-DGVLTNAPPHIRGCACRQRPCITFCCPPEQVFDEQKRSC 115
Cdd:pfam06652   1 CDFFDTVNITGSQRLPNGSYLYEGLVIPAELTGEYDFRILeDGSRVPVPKHLRGCVCKLKPCIRFCCPHGQIYDNGEREC 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577725267  116 MPhasslNAEQQRARYA-HIEVTdSADGSVRVVNITDLFVMRYE--VGCSRKYIDKSDDIFWKWDLYANGSLS--SLDKI 190
Cdd:pfam06652  81 SD-----DHEEELTWPDpHLNVT-LENGSVVEVHILTDFVVQRElpLPCDEMFSLDKEDNYWQWTLFENGSLLrhFDRVH 154
                         170       180
                  ....*....|....*....|....*
gi 577725267  191 WDTDQYCLTPLEHKK-VWSLVPLTC 214
Cdd:pfam06652 155 LSKQEYCLQPLEFNDsDIRLQPHNC 179
Mth_Ecto cd00251
The ectodomain of Methuselah (Mth); Mth mutants have a 35% increase in average lifespan and ...
37-214 5.71e-44

The ectodomain of Methuselah (Mth); Mth mutants have a 35% increase in average lifespan and increased resistance to several forms of stress, including heat, starvation, and oxidative damage; The protein affected by this mutation is related to G protein-coupled receptors of the secretin receptor family; Mth, like secretin receptor family members, has a large N-terminal ectodomain, which may constitute the ligand binding site.


Pssm-ID: 119403  Cd Length: 176  Bit Score: 153.60  E-value: 5.71e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577725267  37 CPYAQTVNISDGLRLKDGSYSYAGLLIPANMTAQYNFKVV-DGVLTNAPPHIRGCACRQRPCITFCCPPEQVFDeqKRSC 115
Cdd:cd00251    1 CDFFDTVNITGSQRFPNGSYLYEGIIIPAHLTGEYDYVILpDGSREPVPEHLRGCVCKLKPCIRFCCPHGKIMD--NGQC 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577725267 116 MPhasslnAEQQRARY-AHIEVTdSADGSVRVVNITDLFVMRYE--VGCSRKYIDKSDDIFWKWDLYANGSLSSLD--KI 190
Cdd:cd00251   79 SD------TVQEELRYdPYVNIT-LADGSVDLRHVLTEFIVQGDlpLPCESMYELDRENEFDEWTLFENGTLLRHYdsRL 151
                        170       180
                 ....*....|....*....|....*
gi 577725267 191 WDTDQYCLTPLEHK-KVWSLVPLTC 214
Cdd:cd00251  152 LSKQEYCLQPRNFNnESIELVPHNC 176
7tmB3_Methuselah-like cd15039
Methuselah-like subfamily B3, member of the class B family of seven-transmembrane G ...
224-488 1.13e-23

Methuselah-like subfamily B3, member of the class B family of seven-transmembrane G protein-coupled receptors; The subfamily B3 of class B GPCRs consists of Methuselah (Mth) and its closely related proteins found in bilateria. Mth was originally identified in Drosophila as a GPCR affecting stress resistance and aging. In addition to the seven transmembrane helices, Mth contains an N-terminal extracellular domain involved in ligand binding, and a third intracellular loop (IC3) required for the specificity of G-protein coupling. Drosophila Mth mutants showed an increase in average lifespan by 35% and greater resistance to a variety of stress factors, including starvation, high temperature, and paraquat-induced oxidative toxicity. Moreover, mutations in two endogenous peptide ligands of Methuselah, Stunted A and B, showed an increased in lifespan and resistance to oxidative stress induced by dietary paraquat. These results strongly suggest that the Stunted-Methuselah system plays important roles in stress response and aging.


Pssm-ID: 410632 [Multi-domain]  Cd Length: 270  Bit Score: 100.38  E-value: 1.13e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577725267 224 WIYVICLFIATLVYAFILLTLVSIRAVRNGgYGESLIFHLASTIigLAALTYLALRSRLELSETACRNIGFIAYVFLMFS 303
Cdd:cd15039    6 ILTLIGLIISLVFLLLTLAVYALLPELRNL-HGKCLMCLVLSLF--VAYLLLLIGQLLSSGDSTLCVALGILLHFFFLAA 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577725267 304 FFLLTIISWNFWYNFKTRRL-----SSWKRKIIYML-AFGLAVgLRFLLKFIQD-SDVYQPLKPGIGDAFCWFDvRLWGI 376
Cdd:cd15039   83 FFWLNVMSFDIWRTFRGKRSsssrsKERKRFLRYSLyAWGVPL-LLVAVTIIVDfSPNTDSLRPGYGEGSCWIS-NPWAL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577725267 377 LLYYYIPILICLGFSMLLYLRTYIIIWNLSDDIINVAGYDIKLiKAHFYAFFAYLLGVSCVWLRELVVYLTFRWRGQYYI 456
Cdd:cd15039  161 LLYFYGPVALLLLFNIILFILTAIRIRKVKKETAKVQSRLRSD-KQRFRLYLKLFVIMGVTWILEIISWFVGGSSVLWYI 239
                        250       260       270
                 ....*....|....*....|....*....|..
gi 577725267 457 IDFVtgVCIFGLSIAGLFFLlyKNPLVRLWWH 488
Cdd:cd15039  240 FDIL--NGLQGVFIFLIFVC--KRRVLRLLKK 267
7tm_classB cd13952
class B family of seven-transmembrane G protein-coupled receptors; The class B of ...
224-487 1.03e-15

class B family of seven-transmembrane G protein-coupled receptors; The class B of seven-transmembrane GPCRs is classified into three major subfamilies: subfamily B1 (secretin-like receptor family), B2 (adhesion family), and B3 (Methuselah-like family). The class B receptors have been identified in all the vertebrates, from fishes to mammals, as well as invertebrates including Caenorhabditis elegans and Drosophila melanogaster, but are not present in plants, fungi or prokaryotes. The B1 subfamily comprises receptors for polypeptide hormones of 27-141 amino-acid residues such as secretin, glucagon, glucagon-like peptide (GLP), calcitonin gene-related peptide, parathyroid hormone (PTH), and corticotropin-releasing factor. These receptors contain the large N-terminal extracellular domain (ECD), which plays a critical role in hormone recognition by binding to the C-terminal portion of the peptide. On the other hand, the N-terminal segment of the hormone induces receptor activation by interacting with the receptor transmembrane domains and connecting extracellular loops, triggering intracellular signaling pathways. All members of the subfamily B1 receptors preferentially couple to G proteins of G(s) family, which positively stimulate adenylate cyclase, leading to increased intracellular cAMP formation and calcium influx. The subfamily B2 consists of cell-adhesion receptors with 33 members in humans and vertebrates. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing a variety of structural motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, linked to a class B seven-transmembrane domain. These include, for example, EGF (epidermal growth factor)-like domains in CD97, Celsr1 (cadherin family member), Celsr2, Celsr3, EMR1 (EGF-module-containing mucin-like hormone receptor-like 1), EMR2, EMR3, and Flamingo; two laminin A G-type repeats and nine cadherin domains in Flamingo and its human orthologs Celsr1, Celsr2 and Celsr3; olfactomedin-like domains in the latrotoxin receptors; and five or four thrombospondin type 1 repeats in BAI1 (brain-specific angiogenesis inhibitor 1), BAI2 and BAI3. Almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions. Furthermore, the subfamily B3 includes Methuselah (Mth) protein, which was originally identified in Drosophila as a GPCR affecting stress resistance and aging, and its closely related proteins.


Pssm-ID: 410627 [Multi-domain]  Cd Length: 260  Bit Score: 77.25  E-value: 1.03e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577725267 224 WIYVICLFIATLVYAFILLTLVSIRAVRNggYGESLIFHLASTIIGLAALTYLALRSRLELSETACRNIGFIAYVFLMFS 303
Cdd:cd13952    6 IITYIGCSLSLVGLLLTIITYLLFPKLRN--LRGKILINLCLSLLLAQLLFLIGQLLTSSDRPVLCKALAILLHYFLLAS 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577725267 304 FFLLTIISWNFWYNF-KTRRLSSWKRKIIYML-AFGLA---VGLRFLLKFIQDSDvyqplKPGIGDAFCWFDVRlWGILL 378
Cdd:cd13952   84 FFWMLVEAFDLYRTFvKVFGSSERRRFLKYSLyGWGLPlliVIITAIVDFSLYGP-----SPGYGGEYCWLSNG-NALLW 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577725267 379 YYYIPILICLGFSMLLYLRTYIIIWNLSDDIINVAGYDIKLIKAHFYAFFAYLLGVScvWLRELVVYLTFRWRGQYYIID 458
Cdd:cd13952  158 AFYGPVLLILLVNLVFFILTVRILLRKLRETPKQSERKSDRKQLRAYLKLFPLMGLT--WIFGILAPFVGGSLVFWYLFD 235
                        250       260       270
                 ....*....|....*....|....*....|..
gi 577725267 459 FVT---GVCIFglsiaglFFLLYKNPLVRLWW 487
Cdd:cd13952  236 ILNslqGFFIF-------LIFCLKNKEVRRLL 260
7tmB2_Adhesion cd15040
adhesion receptors, subfamily B2 of the class B family of seven-transmembrane G ...
224-487 2.17e-05

adhesion receptors, subfamily B2 of the class B family of seven-transmembrane G protein-coupled receptors; The B2 subfamily of class B GPCRs consists of cell-adhesion receptors with 33 members in humans and vertebrates. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing a variety of structural motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, linked to a class B seven-transmembrane domain. These include, for example, EGF (epidermal growth factor)-like domains in CD97, Celsr1 (cadherin family member), Celsr2, Celsr3, EMR1 (EGF-module-containing mucin-like hormone receptor-like 1), EMR2, EMR3, and Flamingo; two laminin A G-type repeats and nine cadherin domains in Flamingo and its human orthologs Celsr1, Celsr2 and Celsr3; olfactomedin-like domains in the latrotoxin receptors; and five or four thrombospondin type 1 repeats in BAI1 (brain-specific angiogenesis inhibitor 1), BAI2 and BAI3. Furthermore, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320168 [Multi-domain]  Cd Length: 253  Bit Score: 46.03  E-value: 2.17e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577725267 224 WIYVICLFIATLVYAFILLTLVSIRAVRNGgYGESLIFHLASTIIGLAALTYLALRSrlELSETACRNIGFIAYVFLMFS 303
Cdd:cd15040    6 IITYIGCGLSLLGLLLTIITYILFRKLRKR-KPTKILLNLCLALLLANLLFLFGINS--TDNPVLCTAVAALLHYFLLAS 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577725267 304 FFLLTIISWNFWYNFKTRRLSSWKRKIIYMLAFGLAV-GLRFLLKFIQDSDVYqplkpGIGDAFCWFDVRLwGILLYYYI 382
Cdd:cd15040   83 FMWMLVEALLLYLRLVKVFGTYPRHFILKYALIGWGLpLIIVIITLAVDPDSY-----GNSSGYCWLSNGN-GLYYAFLG 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577725267 383 PILICLGFSMLLYLRtyiIIWNLSDDIINVAGYDIKLIKAHFYAFFA--YLLGVScvWLRELVVYLTFRwrgqyyiIDFV 460
Cdd:cd15040  157 PVLLIILVNLVIFVL---VLRKLLRLSAKRNKKKRKKTKAQLRAAVSlfFLLGLT--WIFGILAIFGAR-------VVFQ 224
                        250       260       270
                 ....*....|....*....|....*....|
gi 577725267 461 TGVCIFGlSIAGLF-FLLY--KNPLVRLWW 487
Cdd:cd15040  225 YLFAIFN-SLQGFFiFIFHclRNKEVRKAW 253
7tm_classA_rhodopsin-like cd00637
rhodopsin receptor-like class A family of the seven-transmembrane G protein-coupled receptor ...
225-403 9.59e-03

rhodopsin receptor-like class A family of the seven-transmembrane G protein-coupled receptor superfamily; Class A rhodopsin-like receptors constitute about 90% of all GPCRs. The class A GPCRs include the light-sensitive rhodopsin as well as receptors for biogenic amines, lipids, nucleotides, odorants, peptide hormones, and a variety of other ligands. All GPCRs have a common structural architecture comprising of seven-transmembrane (TM) alpha-helices interconnected by three extracellular and three intracellular loops. A general feature of GPCR signaling is agonist-induced conformational changes in the receptors, leading to activation of the heterotrimeric G proteins, which consist of the guanine nucleotide-binding G-alpha subunit and the dimeric G-beta-gamma subunits. The activated G proteins then bind to and activate numerous downstream effector proteins, which generate second messengers that mediate a broad range of cellular and physiological processes. Based on sequence similarity, GPCRs can be divided into six major classes: class A (rhodopsin-like family), class B (Methuselah-like, adhesion and secretin-like receptor family), class C (metabotropic glutamate receptor family), class D (fungal mating pheromone receptors), class E (cAMP receptor family), and class F (frizzled/smoothened receptor family). Nearly 800 human GPCR genes have been identified and are involved essentially in all major physiological processes. Approximately 40% of clinically marketed drugs mediate their effects through modulation of GPCR function for the treatment of a variety of human diseases including bacterial infections.


Pssm-ID: 410626 [Multi-domain]  Cd Length: 275  Bit Score: 38.04  E-value: 9.59e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577725267 225 IYVICLFIATLVYAFILLTLVSIRAVRNGGYgeSLIFHLA-----STIIGLAALTYLALRSRLELSETACRNIGFIAYVF 299
Cdd:cd00637    4 LYILIFVVGLVGNLLVILVILRNRRLRTVTN--YFILNLAvadllVGLLVIPFSLVSLLLGRWWFGDALCKLLGFLQSVS 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577725267 300 LMFSFFLLTIISWNFW----YNFKTRRLSSWKRKIIYMLA---FGLAVGLRFLLKFIqdsdvYQPLKPGIGDAFCWFDVR 372
Cdd:cd00637   82 LLASILTLTAISVDRYlaivHPLRYRRRFTRRRAKLLIALiwlLSLLLALPPLLGWG-----VYDYGGYCCCCLCWPDLT 156
                        170       180       190
                 ....*....|....*....|....*....|.
gi 577725267 373 LWGIllYYYIPILICLGFSMLLYLRTYIIIW 403
Cdd:cd00637  157 LSKA--YTIFLFVLLFLLPLLVIIVCYVRIF 185
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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