NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1736056078|gb|KAA0538028|]
View 

YkgJ family cysteine cluster protein [Citrobacter portucalensis]

Protein Classification

YkgJ family cysteine cluster protein( domain architecture ID 10508572)

YkgJ family cysteine cluster protein similar to Escherichia coli UPF0153 protein YeiW, containing a conserved cysteine motif which might chelate iron or zinc ions

Gene Ontology:  GO:0051536

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CxxCxxCC pfam03692
Putative zinc- or iron-chelating domain; This family of proteins contains 8 conserved ...
 2-54 1.28e-04

Putative zinc- or iron-chelating domain; This family of proteins contains 8 conserved cysteines. It has in the past been annotated as being one of the complex of proteins of the flagellar Fli complex. However this was due to a mis-annotation of the original Salmonella LT2 Genbank entry of 'fliB'. With all its conserved cysteines it is possibly a domain that chelates iron or zinc ions.


:

Pssm-ID: 308985  Cd Length: 85  Bit Score: 36.83  E-value: 1.28e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1736056078  2 ECRPdCGACCTAPSISSPIPGMPDGKPA---------------NTPCVQLD-ESLRCKIFASplRPKVC 54
Cdd:pfam03692  1 LCDG-CGACCKALGIKLTDEDTERLAPTgvaeededleeyvkvDGRCVFLDeETCLCSIYEE--RPLCC 66
 
Name Accession Description Interval E-value
CxxCxxCC pfam03692
Putative zinc- or iron-chelating domain; This family of proteins contains 8 conserved ...
 2-54 1.28e-04

Putative zinc- or iron-chelating domain; This family of proteins contains 8 conserved cysteines. It has in the past been annotated as being one of the complex of proteins of the flagellar Fli complex. However this was due to a mis-annotation of the original Salmonella LT2 Genbank entry of 'fliB'. With all its conserved cysteines it is possibly a domain that chelates iron or zinc ions.


Pssm-ID: 308985  Cd Length: 85  Bit Score: 36.83  E-value: 1.28e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1736056078  2 ECRPdCGACCTAPSISSPIPGMPDGKPA---------------NTPCVQLD-ESLRCKIFASplRPKVC 54
Cdd:pfam03692  1 LCDG-CGACCKALGIKLTDEDTERLAPTgvaeededleeyvkvDGRCVFLDeETCLCSIYEE--RPLCC 66
 
Name Accession Description Interval E-value
CxxCxxCC pfam03692
Putative zinc- or iron-chelating domain; This family of proteins contains 8 conserved ...
 2-54 1.28e-04

Putative zinc- or iron-chelating domain; This family of proteins contains 8 conserved cysteines. It has in the past been annotated as being one of the complex of proteins of the flagellar Fli complex. However this was due to a mis-annotation of the original Salmonella LT2 Genbank entry of 'fliB'. With all its conserved cysteines it is possibly a domain that chelates iron or zinc ions.


Pssm-ID: 308985  Cd Length: 85  Bit Score: 36.83  E-value: 1.28e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1736056078  2 ECRPdCGACCTAPSISSPIPGMPDGKPA---------------NTPCVQLD-ESLRCKIFASplRPKVC 54
Cdd:pfam03692  1 LCDG-CGACCKALGIKLTDEDTERLAPTgvaeededleeyvkvDGRCVFLDeETCLCSIYEE--RPLCC 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH