|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10160 |
PRK10160 |
taurine ABC transporter permease TauC; |
1-275 |
2.04e-168 |
|
taurine ABC transporter permease TauC;
Pssm-ID: 182276 Cd Length: 275 Bit Score: 466.95 E-value: 2.04e-168
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 1 MSVLINEKLHSHRLKWRWPLSRQVTLSIGTLAVLLTVWWAVAALQLISPLFLPPPQQVLAKLLTIAGPQGFMDATLWQHL 80
Cdd:PRK10160 1 MSVLINEKLHSRRLKWRWPLSRQLTLSIGTLAVLLAVWWAVAALQLISPLFLPPPQQVLAKLLTIAGPQGFMDATLWQHL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 81 AASLTRIVLALLAAVVIGIPVGIAMRLSPTVRGILDPVIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMS 160
Cdd:PRK10160 81 AASLTRIVLALLAAVVIGIPVGIAMGLSPTVRGILDPLIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 161 ALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELIAATRGLGFMVQSAGEFLATD 240
Cdd:PRK10160 161 ALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELIAATRGLGFMVQSAGEFLATD 240
|
250 260 270
....*....|....*....|....*....|....*
gi 1739680865 241 VVLAGIAVIAIIAFLLELGLRALQRRLTPWHGEVQ 275
Cdd:PRK10160 241 VVLAGIAVIAIIAFLLELGLRALQRRLTPWHGEVQ 275
|
|
| TauC |
COG0600 |
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ... |
22-271 |
3.85e-70 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440365 [Multi-domain] Cd Length: 254 Bit Score: 216.55 E-value: 3.85e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 22 RQVTLSIGTLAVLLTVWWAVAALQLISPLFLPPPQQVLAKLLTIAGpqgfmDATLWQHLAASLTRIVLALLAAVVIGIPV 101
Cdd:COG0600 10 RRLLLPLLSLALLLALWELAARLGLVPPFLLPSPSAVLAALVELLA-----SGELWEHLLASLLRVLLGFALAALLGVPL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 102 GIAMRLSPTVRGILDPVIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMSALAGVKSAQQVRIRAAQSLGA 181
Cdd:COG0600 85 GLLLGLSRLLRRLLDPLLVFLRPIPPLALAPLLILWFGIGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 182 SRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELIAATRGLGFMVQSAGEFLATDVVLAGIAVIAIIAFLLELGLR 261
Cdd:COG0600 165 SRWQILRKVVLPAALPYIFTGLRIALGLAWIGLVVAELLGASSGLGYLILDARQLLDTDLVFAAILVIGLLGLLLDLLLR 244
|
250
....*....|
gi 1739680865 262 ALQRRLTPWH 271
Cdd:COG0600 245 LLERRLLRWR 254
|
|
| ntrB |
TIGR01183 |
nitrate ABC transporter, permease protein; This model describes the nitrate transport permease ... |
70-233 |
1.37e-23 |
|
nitrate ABC transporter, permease protein; This model describes the nitrate transport permease in bacteria. This is gene product of ntrB. The nitrate transport permease is the integral membrane component of the nitrate transport system and belongs to the ATP-binding cassette (ABC) superfamily. At least in photosynthetic bacteria nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA, ntrB, ntrC, ntrD, narB. Functionally ntrC and ntrD resemble the ATP binding components of the binding protein-dependent transport systems. Mutational studies have shown that ntrB and ntrC are mandatory for nitrate accumulation. Nitrate reductase is encoded by narB. [Transport and binding proteins, Anions]
Pssm-ID: 130251 Cd Length: 202 Bit Score: 94.87 E-value: 1.37e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 70 GFMDATLWQHLAASLTRIVLALLAAVVIGIPVGIAMRLSPTVRGILDPVIELYRPVPPLAYLPLMVIWFGIGETSKILLI 149
Cdd:TIGR01183 9 GGTDKGLFWQIIASLTRVAVGFSIAAIIGIAVGILIGLSKFLNAALDPIFQVLRTIPPLAWLPIALAAFQDAQPAAIFVI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 150 YLAIFAPVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELIAATRGLGFM 229
Cdd:TIGR01183 89 FITAIWPIIINTAVGVQQIPQDYNNVARVLKLSKSDYFLKVLLPAAVPYIFTGLRIAIGLSWLAIVAAEMLMGGVGIGFF 168
|
....
gi 1739680865 230 VQSA 233
Cdd:TIGR01183 169 IWDA 172
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
98-269 |
8.60e-13 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 65.01 E-value: 8.60e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 98 GIPVGI--AMRLSPTVRGILDPVIELYRPVPPLAYLPLMVI-----WFGIGETSKILLIYLAIFAPVAMSALAGVKSAQQ 170
Cdd:pfam00528 1 GIPLGIiaALRRGRRLDRLLRPLIDLLQALPSFVLAILLVViailsILGHGILPAIILALLGWAGYARLIRRAALRSLPS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 171 VRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELIAATRGLGFMVQSAGEFLATDVVLAGIAVIA 250
Cdd:pfam00528 81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAA 160
|
170
....*....|....*....
gi 1739680865 251 IIAFLLELGLRALQRRLTP 269
Cdd:pfam00528 161 LILLLLNLLVDILQRLLDP 179
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
80-222 |
1.63e-10 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 58.83 E-value: 1.63e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 80 LAASLTRIVLALLAAVVIGIPVGIAM-RLSPTVRGILDPVIELYRPVPPLAYLPLMVIWFGIGETSK---------ILLI 149
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILaRKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGilpglglpaLILA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1739680865 150 YLAIFAPVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELIAA 222
Cdd:cd06261 81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGG 153
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10160 |
PRK10160 |
taurine ABC transporter permease TauC; |
1-275 |
2.04e-168 |
|
taurine ABC transporter permease TauC;
Pssm-ID: 182276 Cd Length: 275 Bit Score: 466.95 E-value: 2.04e-168
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 1 MSVLINEKLHSHRLKWRWPLSRQVTLSIGTLAVLLTVWWAVAALQLISPLFLPPPQQVLAKLLTIAGPQGFMDATLWQHL 80
Cdd:PRK10160 1 MSVLINEKLHSRRLKWRWPLSRQLTLSIGTLAVLLAVWWAVAALQLISPLFLPPPQQVLAKLLTIAGPQGFMDATLWQHL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 81 AASLTRIVLALLAAVVIGIPVGIAMRLSPTVRGILDPVIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMS 160
Cdd:PRK10160 81 AASLTRIVLALLAAVVIGIPVGIAMGLSPTVRGILDPLIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 161 ALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELIAATRGLGFMVQSAGEFLATD 240
Cdd:PRK10160 161 ALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELIAATRGLGFMVQSAGEFLATD 240
|
250 260 270
....*....|....*....|....*....|....*
gi 1739680865 241 VVLAGIAVIAIIAFLLELGLRALQRRLTPWHGEVQ 275
Cdd:PRK10160 241 VVLAGIAVIAIIAFLLELGLRALQRRLTPWHGEVQ 275
|
|
| TauC |
COG0600 |
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ... |
22-271 |
3.85e-70 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440365 [Multi-domain] Cd Length: 254 Bit Score: 216.55 E-value: 3.85e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 22 RQVTLSIGTLAVLLTVWWAVAALQLISPLFLPPPQQVLAKLLTIAGpqgfmDATLWQHLAASLTRIVLALLAAVVIGIPV 101
Cdd:COG0600 10 RRLLLPLLSLALLLALWELAARLGLVPPFLLPSPSAVLAALVELLA-----SGELWEHLLASLLRVLLGFALAALLGVPL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 102 GIAMRLSPTVRGILDPVIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMSALAGVKSAQQVRIRAAQSLGA 181
Cdd:COG0600 85 GLLLGLSRLLRRLLDPLLVFLRPIPPLALAPLLILWFGIGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 182 SRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELIAATRGLGFMVQSAGEFLATDVVLAGIAVIAIIAFLLELGLR 261
Cdd:COG0600 165 SRWQILRKVVLPAALPYIFTGLRIALGLAWIGLVVAELLGASSGLGYLILDARQLLDTDLVFAAILVIGLLGLLLDLLLR 244
|
250
....*....|
gi 1739680865 262 ALQRRLTPWH 271
Cdd:COG0600 245 LLERRLLRWR 254
|
|
| ssuC |
PRK11365 |
aliphatic sulfonate ABC transporter permease SsuC; |
34-271 |
2.55e-35 |
|
aliphatic sulfonate ABC transporter permease SsuC;
Pssm-ID: 183100 Cd Length: 263 Bit Score: 127.36 E-value: 2.55e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 34 LLTVWWAVAALQLISPLFLPPPQQVLAKLLTIAGpqgfmDATLWQHLAASLTRIVLALLAAVVIGIPVGIAMRLSPTVRG 113
Cdd:PRK11365 21 IVAVWQLASSVGWLSTRILPSPEGVVTAFWTLSA-----SGELWQHLAISSWRALIGFSIGGSLGLILGLISGLSRWGER 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 114 ILDPVIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVILP 193
Cdd:PRK11365 96 LLDTSIQMLRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILP 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1739680865 194 GALPEILTGLRIGLGVGWSTLVAAELIAATRGLGFMVQSAGEFLATDVVLAGIAVIAIIAFLLELGLRALQRRLTPWH 271
Cdd:PRK11365 176 GALPSIMVGVRFALGLMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIILYALLGKLADVSAQLLERLWLRWN 253
|
|
| ntrB |
TIGR01183 |
nitrate ABC transporter, permease protein; This model describes the nitrate transport permease ... |
70-233 |
1.37e-23 |
|
nitrate ABC transporter, permease protein; This model describes the nitrate transport permease in bacteria. This is gene product of ntrB. The nitrate transport permease is the integral membrane component of the nitrate transport system and belongs to the ATP-binding cassette (ABC) superfamily. At least in photosynthetic bacteria nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA, ntrB, ntrC, ntrD, narB. Functionally ntrC and ntrD resemble the ATP binding components of the binding protein-dependent transport systems. Mutational studies have shown that ntrB and ntrC are mandatory for nitrate accumulation. Nitrate reductase is encoded by narB. [Transport and binding proteins, Anions]
Pssm-ID: 130251 Cd Length: 202 Bit Score: 94.87 E-value: 1.37e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 70 GFMDATLWQHLAASLTRIVLALLAAVVIGIPVGIAMRLSPTVRGILDPVIELYRPVPPLAYLPLMVIWFGIGETSKILLI 149
Cdd:TIGR01183 9 GGTDKGLFWQIIASLTRVAVGFSIAAIIGIAVGILIGLSKFLNAALDPIFQVLRTIPPLAWLPIALAAFQDAQPAAIFVI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 150 YLAIFAPVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELIAATRGLGFM 229
Cdd:TIGR01183 89 FITAIWPIIINTAVGVQQIPQDYNNVARVLKLSKSDYFLKVLLPAAVPYIFTGLRIAIGLSWLAIVAAEMLMGGVGIGFF 168
|
....
gi 1739680865 230 VQSA 233
Cdd:TIGR01183 169 IWDA 172
|
|
| OpuBB |
COG1174 |
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ... |
76-270 |
4.90e-18 |
|
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440787 [Multi-domain] Cd Length: 212 Bit Score: 80.10 E-value: 4.90e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 76 LWQHLAASLtrivLALLAAVVIGIPVGIAMRLSPTVRGILDPVIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFA 155
Cdd:COG1174 20 LLEHLLLVL----LALLIALLIAVPLGILITRRRRLAGLVLGVANILQTIPSLALLALLIPLLGIGPAPAIIALVLYALL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 156 PVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGL--GVGWSTLVAaeLIAAtRGLGFMVQSA 233
Cdd:COG1174 96 PILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTAAvqNIGTATLAA--LIGA-GGLGDLIFDG 172
|
170 180 190
....*....|....*....|....*....|....*..
gi 1739680865 234 GEFLATDVVLAGIAVIAIIAFLLELGLRALQRRLTPW 270
Cdd:COG1174 173 LQLNNTALILAGAILVALLALLVDLLLALLERLLTPR 209
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
98-269 |
8.60e-13 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 65.01 E-value: 8.60e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 98 GIPVGI--AMRLSPTVRGILDPVIELYRPVPPLAYLPLMVI-----WFGIGETSKILLIYLAIFAPVAMSALAGVKSAQQ 170
Cdd:pfam00528 1 GIPLGIiaALRRGRRLDRLLRPLIDLLQALPSFVLAILLVViailsILGHGILPAIILALLGWAGYARLIRRAALRSLPS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 171 VRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELIAATRGLGFMVQSAGEFLATDVVLAGIAVIA 250
Cdd:pfam00528 81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAA 160
|
170
....*....|....*....
gi 1739680865 251 IIAFLLELGLRALQRRLTP 269
Cdd:pfam00528 161 LILLLLNLLVDILQRLLDP 179
|
|
| PRK10952 |
PRK10952 |
proline/glycine betaine ABC transporter permease ProW; |
77-230 |
1.36e-12 |
|
proline/glycine betaine ABC transporter permease ProW;
Pssm-ID: 236805 Cd Length: 355 Bit Score: 66.65 E-value: 1.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 77 WQHLAASLTRIVLALLAAVVIGIPVGIAMRLSPTVRGILDPVIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAP 156
Cdd:PRK10952 143 WSQAMVTLALVLTALLFCIVIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPP 222
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1739680865 157 VAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELIAATrGLGFMV 230
Cdd:PRK10952 223 IVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVG-GLGQMV 295
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
80-222 |
1.63e-10 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 58.83 E-value: 1.63e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 80 LAASLTRIVLALLAAVVIGIPVGIAM-RLSPTVRGILDPVIELYRPVPPLAYLPLMVIWFGIGETSK---------ILLI 149
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILaRKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGilpglglpaLILA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1739680865 150 YLAIFAPVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELIAA 222
Cdd:cd06261 81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGG 153
|
|
| MetP |
COG2011 |
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ... |
72-203 |
1.87e-06 |
|
ABC-type methionine transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 441614 Cd Length: 220 Bit Score: 47.74 E-value: 1.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 72 MDATLWQHLAASLTRIVLALLAAVVIGIPVGIAMRLS--------PTVRGILDPVIELYRPVPplaYLPLMVIWF----- 138
Cdd:COG2011 8 LWPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTrpggllpnPVLYRVLGVIVNIFRSIP---FIILLVALIpltrl 84
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1739680865 139 ----GIGETSKIL-LIYLAI--FAPVAMSALAGVKSAqqvRIRAAQSLGASRAQVLWFVILPGALPEILTGL 203
Cdd:COG2011 85 ivgtSIGTTAAIVpLTIAAIpfFARLVENALREVDPG---VIEAAQAMGASPWQIIFKVLLPEALPSLILGL 153
|
|
| HisM |
COG0765 |
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ... |
76-200 |
2.22e-05 |
|
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440528 [Multi-domain] Cd Length: 218 Bit Score: 44.30 E-value: 2.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 76 LWQHLAASLTRIVLALLAAVVIGIPVGIaMRLS--PTVRGILDPVIELYRPVPPLayLPLMVIWFGIGEtskiLLIYLAI 153
Cdd:COG0765 15 LLEGLLVTLLLTVLAIVLGLVLGLLLAL-ARLSpnPVLRWLATAYVEFFRGTPLL--VQLFFIYFGLPL----LGIDLSP 87
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1739680865 154 F--APVAMSALAGVKSAQQVR----------IRAAQSLGASRAQVLWFVILPGALPEIL 200
Cdd:COG0765 88 FvaAVIALTLNSAAYLAEIVRagiqsvpkgqWEAARALGLSRWQTMRRIILPQALRIIL 146
|
|
| PotC |
COG1177 |
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ... |
71-202 |
3.90e-05 |
|
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];
Pssm-ID: 440790 [Multi-domain] Cd Length: 262 Bit Score: 43.95 E-value: 3.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 71 FMDATLWQHLAASLTRIVLALLAAVVIGIPVGIAM-RLSPTVRGILDPVIELYRPVPPLAY-LPLMVIWFGIGETSKILL 148
Cdd:COG1177 54 FSDPRLLDALLNSLLIALLSTLLATVLGTPAALALaRYRFRGRRLLLALLLLPLVVPGIVLgVALLLLFSALGLSGGLWG 133
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1739680865 149 IYLAIFAP----VAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTG 202
Cdd:COG1177 134 LILAHVVFtlpfVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAG 191
|
|
| PhnE |
TIGR01097 |
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ... |
76-200 |
7.46e-05 |
|
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]
Pssm-ID: 273441 [Multi-domain] Cd Length: 250 Bit Score: 42.91 E-value: 7.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 76 LWQHLAASLTRIVLALLAAVVIGIPVGIAMRLSPTVRGILDPVIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFA 155
Cdd:TIGR01097 60 LLETLAMAILGTVLAAVLAVPLALLAARNITPSPWLYGLARLLLNFLRAIPELVWALIFVAAVGLGPFAGVLALAFHTVG 139
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1739680865 156 PVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEIL 200
Cdd:TIGR01097 140 FLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFL 184
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
71-203 |
1.63e-04 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 42.84 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 71 FMDATLWQHLAASLTRIVLALLAAVVIGIPVGIAMRLSPT-VRGILDPVIELYRPVPP----LAYLPLMVIWFGIGETSK 145
Cdd:COG1178 331 LLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGrLARLLDRLAMLPYAVPGivlgLGLLLLFNRPLPLLLYGT 410
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1739680865 146 ILLI---YLAIFAPVAM-SALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGL 203
Cdd:COG1178 411 LAILvlaYVVRFLPFALrSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAA 472
|
|
| COG4986 |
COG4986 |
ABC-type anion transport system, duplicated permease component [Inorganic ion transport and ... |
20-227 |
4.53e-04 |
|
ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism];
Pssm-ID: 444010 [Multi-domain] Cd Length: 576 Bit Score: 41.37 E-value: 4.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 20 LSRQVTLSIGTLAVLLTVWWAVAALQLIspLFLPPPQQVLaklltiagpQGFMDAtlwqhlAASLTRIVLALLAAVVIGI 99
Cdd:COG4986 328 LSRWLDRLWLALLALLVLYGLWRLLLFL--LTEVGLSEVL---------HVFLLG------LLTLLRVVVLIALASLIWV 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 100 PVGIAMRLSPTVRGILDPVIELYRPVPPLAYLPLMVIWF-GIGETSKILLIYLAIFAP---VAMSALAGVKSAQQVRIRA 175
Cdd:COG4986 391 PVGVWIGLRPRLARRLQPVAQFLASFPANLLFPVAVLLIvRFGLNPNIWLSPLMILGTqwyILFNVIAGASAIPNDLREA 470
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1739680865 176 AQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELIA------ATRGLG 227
Cdd:COG4986 471 ARNFGLRGWLWWRRLILPGIFPYYVTGAITASGGAWNASIVAEYVSwgdttlQATGLG 528
|
|
| PstA |
COG0581 |
ABC-type phosphate transport system, permease component [Inorganic ion transport and ... |
175-208 |
1.23e-03 |
|
ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440346 [Multi-domain] Cd Length: 259 Bit Score: 39.25 E-value: 1.23e-03
10 20 30
....*....|....*....|....*....|....
gi 1739680865 175 AAQSLGASRAQVLWFVILPGALPEILTGLRIGLG 208
Cdd:COG0581 147 ASYALGATKWQTIRKVVLPAALPGILTGVILAIA 180
|
|
| PhnE |
COG3639 |
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ... |
28-200 |
1.49e-03 |
|
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 442856 [Multi-domain] Cd Length: 244 Bit Score: 38.91 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 28 IGTLAVLLTVWWAVAALQlISPLFLPPPQQVLAKLLTIAGPQGFmdATLWQHLAASLTRIVLALLA---AVVIGIPVGI- 103
Cdd:COG3639 1 LLLLALLALLVWSLWGLE-FDLGRLIDGLPNLADFLSRFFPPDW--SYLPDLLSALLETLAIALLGtllGAVLALPLAFl 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 104 -------AMRLSPTVRGILDpvieLYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVA--MS-ALAGVKSAQqvrI 173
Cdd:COG3639 78 aarnlapNPWVRLLARRLLN----VLRAIPELVWALIFVAAVGLGPFAGVLALAIHTIGFLGklFAeAIEEIDPGP---V 150
|
170 180
....*....|....*....|....*..
gi 1739680865 174 RAAQSLGASRAQVLWFVILPGALPEIL 200
Cdd:COG3639 151 EALRATGASRLQVIRYGVLPQVLPQFL 177
|
|
| CysU |
COG0555 |
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ... |
175-203 |
2.87e-03 |
|
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440321 [Multi-domain] Cd Length: 268 Bit Score: 38.19 E-value: 2.87e-03
10 20
....*....|....*....|....*....
gi 1739680865 175 AAQSLGASRAQVLWFVILPGALPEILTGL 203
Cdd:COG0555 169 AAATLGASRWQTFRRVILPLLLPALLTGF 197
|
|
| phosphate_pstC |
TIGR02138 |
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ... |
67-208 |
5.46e-03 |
|
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]
Pssm-ID: 273992 [Multi-domain] Cd Length: 295 Bit Score: 37.63 E-value: 5.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 67 GPQGFMDATLWQHLAASLTRI--VLALLA--------AVVIGIPVGIAM------RLSPTVRGILDPVIELYRPVPPLAY 130
Cdd:TIGR02138 38 GILNFLTGTVWDPGSGPVQEQygALPLIVgtlitsliALLIAVPVGIGIaiflseIAPKRVRSVLKPVVELLAGIPSVVY 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1739680865 131 --------LPLMVIWFGIGETSKILLIYLAIFAPVAMSALAGV--------------KSAQQVRIRAAQSLGASRAQVLW 188
Cdd:TIGR02138 118 gfwglfvlVPFLKPHFQPFLGSNLGLIPLFGGPILTAGIVLAImilptiasisrdalRAVPRSYKEASYALGATKWETIR 197
|
170 180
....*....|....*....|
gi 1739680865 189 FVILPGALPEILTGLRIGLG 208
Cdd:TIGR02138 198 RVILPAARSGIVGAVVLGLG 217
|
|
| 3a0107s02c |
TIGR00974 |
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ... |
175-208 |
7.46e-03 |
|
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]
Pssm-ID: 273373 Cd Length: 271 Bit Score: 37.21 E-value: 7.46e-03
10 20 30
....*....|....*....|....*....|....
gi 1739680865 175 AAQSLGASRAQVLWFVILPGALPEILTGLRIGLG 208
Cdd:TIGR00974 161 ASLALGATKWQTIFKVVLPAALPGILTGIILSIA 194
|
|
| |
