NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1740002482|gb|KAA1771190|]
View 

zinc ribbon-containing protein [Klebsiella pneumoniae]

Protein Classification

zinc ribbon-containing protein( domain architecture ID 10013711)

zinc ribbon-containing protein similar to Escherichia coli protein YbeL

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK11032 PRK11032
zinc ribbon-containing protein;
1-160 2.64e-115

zinc ribbon-containing protein;


:

Pssm-ID: 182915  Cd Length: 160  Bit Score: 323.10  E-value: 2.64e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740002482   1 MNKVAQYYRELVSSLSERLRHGERDIDALVTQAREKIVRAGDLTQSEIESVIAAVKRDLEEFARSYEESHEDESDSVFMR 80
Cdd:PRK11032    1 MNKVAQYYRELVASLTERLRNGERDIDALVESARKRVDAAGELTRDEVDLITRAVRRDLEEFARSYEESKEEFSDSVFMR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740002482  81 VIKESLWQELADITDKTQLEWREVFQDLNHHGVYHSGEVVGLGNLVCEKCHYHLAVYTPDVLPRCPKCGHDQFQRRPFEP 160
Cdd:PRK11032   81 VIKESLWQELADITDKTQLEWREVFQDLNHHGVYHSGEVVGLGNLVCEKCHHHLAFYTPEVLPLCPKCGHDQFQRRPFEP 160
 
Name Accession Description Interval E-value
PRK11032 PRK11032
zinc ribbon-containing protein;
1-160 2.64e-115

zinc ribbon-containing protein;


Pssm-ID: 182915  Cd Length: 160  Bit Score: 323.10  E-value: 2.64e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740002482   1 MNKVAQYYRELVSSLSERLRHGERDIDALVTQAREKIVRAGDLTQSEIESVIAAVKRDLEEFARSYEESHEDESDSVFMR 80
Cdd:PRK11032    1 MNKVAQYYRELVASLTERLRNGERDIDALVESARKRVDAAGELTRDEVDLITRAVRRDLEEFARSYEESKEEFSDSVFMR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740002482  81 VIKESLWQELADITDKTQLEWREVFQDLNHHGVYHSGEVVGLGNLVCEKCHYHLAVYTPDVLPRCPKCGHDQFQRRPFEP 160
Cdd:PRK11032   81 VIKESLWQELADITDKTQLEWREVFQDLNHHGVYHSGEVVGLGNLVCEKCHHHLAFYTPEVLPLCPKCGHDQFQRRPFEP 160
DUF1451 pfam07295
Zinc-ribbon containing domain; This family consists of several hypothetical bacterial proteins ...
 13-157 6.29e-71

Zinc-ribbon containing domain; This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein.


Pssm-ID: 429390  Cd Length: 147  Bit Score: 210.15  E-value: 6.29e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740002482  13 SSLSERLRHGERDIDALVTQAREKIVRAGDLTQSEIESVIAAVKRDLEEFARSYEESHED--ESDSVFMRVIKESLWQEL 90
Cdd:pfam07295   1 ESLEEAEELTAPSLEQALEKAREYLVEAGELTREELALVAAYLKRDLEEFARYLEESGEDlrDWLSFDLRLIENSLWDWL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1740002482  91 ADITDKTQLEWREVFQDLNHHGVYHSGEVVGLGNLVCEKCHYHLAVYTPDVLPRCPKCGHDQFQRRP 157
Cdd:pfam07295  81 ASIADRTQVEWAELAEDLEHHGVYQSGEVTGPGTLVCDQCGHELHFKHPGVIPPCPKCGGTEFRRRP 147
CxxC_CxxC_SSSS TIGR02605
putative regulatory protein, FmdB family; This model represents a region of about 50 amino ...
 127-155 5.72e-03

putative regulatory protein, FmdB family; This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (SP:Q50229, ). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors. [Regulatory functions, DNA interactions]


Pssm-ID: 274226  Cd Length: 52  Bit Score: 33.47  E-value: 5.72e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1740002482 127 CEKCHYHLAVYTP---DVLPRCPKCGHDQFQR 155
Cdd:TIGR02605   8 CTACGHRFEVLQKmsdDPLATCPACGGTKLRR 39
 
Name Accession Description Interval E-value
PRK11032 PRK11032
zinc ribbon-containing protein;
1-160 2.64e-115

zinc ribbon-containing protein;


Pssm-ID: 182915  Cd Length: 160  Bit Score: 323.10  E-value: 2.64e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740002482   1 MNKVAQYYRELVSSLSERLRHGERDIDALVTQAREKIVRAGDLTQSEIESVIAAVKRDLEEFARSYEESHEDESDSVFMR 80
Cdd:PRK11032    1 MNKVAQYYRELVASLTERLRNGERDIDALVESARKRVDAAGELTRDEVDLITRAVRRDLEEFARSYEESKEEFSDSVFMR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740002482  81 VIKESLWQELADITDKTQLEWREVFQDLNHHGVYHSGEVVGLGNLVCEKCHYHLAVYTPDVLPRCPKCGHDQFQRRPFEP 160
Cdd:PRK11032   81 VIKESLWQELADITDKTQLEWREVFQDLNHHGVYHSGEVVGLGNLVCEKCHHHLAFYTPEVLPLCPKCGHDQFQRRPFEP 160
DUF1451 pfam07295
Zinc-ribbon containing domain; This family consists of several hypothetical bacterial proteins ...
 13-157 6.29e-71

Zinc-ribbon containing domain; This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein.


Pssm-ID: 429390  Cd Length: 147  Bit Score: 210.15  E-value: 6.29e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1740002482  13 SSLSERLRHGERDIDALVTQAREKIVRAGDLTQSEIESVIAAVKRDLEEFARSYEESHED--ESDSVFMRVIKESLWQEL 90
Cdd:pfam07295   1 ESLEEAEELTAPSLEQALEKAREYLVEAGELTREELALVAAYLKRDLEEFARYLEESGEDlrDWLSFDLRLIENSLWDWL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1740002482  91 ADITDKTQLEWREVFQDLNHHGVYHSGEVVGLGNLVCEKCHYHLAVYTPDVLPRCPKCGHDQFQRRP 157
Cdd:pfam07295  81 ASIADRTQVEWAELAEDLEHHGVYQSGEVTGPGTLVCDQCGHELHFKHPGVIPPCPKCGGTEFRRRP 147
CxxC_CxxC_SSSS TIGR02605
putative regulatory protein, FmdB family; This model represents a region of about 50 amino ...
 127-155 5.72e-03

putative regulatory protein, FmdB family; This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (SP:Q50229, ). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors. [Regulatory functions, DNA interactions]


Pssm-ID: 274226  Cd Length: 52  Bit Score: 33.47  E-value: 5.72e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1740002482 127 CEKCHYHLAVYTP---DVLPRCPKCGHDQFQR 155
Cdd:TIGR02605   8 CTACGHRFEVLQKmsdDPLATCPACGGTKLRR 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH