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Conserved domains on  [gi|1745881586|gb|KAA5379765|]
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glycoside hydrolase family 88 protein [Phocaeicola dorei]

Protein Classification

glycoside hydrolase family 105 protein( domain architecture ID 10008370)

glycoside hydrolase family 105 (GH105) protein similar to Bacillus subtilis unsaturated rhamnogalacturonyl hydrolases YetR and YesR, which catalyze the hydrolysis of unsaturated rhamnogalacturonan disaccharide to yield unsaturated D-galacturonic acid and L-rhamnose

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YesR COG4225
Rhamnogalacturonyl hydrolase YesR [Carbohydrate transport and metabolism];
55-412 2.50e-145

Rhamnogalacturonyl hydrolase YesR [Carbohydrate transport and metabolism];


:

Pssm-ID: 443369  Cd Length: 336  Bit Score: 416.52  E-value: 2.50e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1745881586  55 FADSEMLRFPkayQLDHGKRLFFGYSQGVGCCAMLDMWKNTGDKRYFTYVEEWADSLINEKgeiHLYDMSTYNLDYINSG 134
Cdd:COG4225     1 VADSQLKRYW---DIDPGKFPKWDYTQGVTLYGLLKLAEATGDKKYLDYIKRWFDFFIDEG---NTYKLPPYNLDDIAPG 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1745881586 135 KVLFDLYKETGKEKYKAAMDLLVE-QLKRQPRTLEGGFWHKLIYQHQMWLDGLYMASPFLARYGAEFNRPDLIDEAVKQF 213
Cdd:COG4225    75 LALLELYEQTGDPKYLKAADTLADwQLNTQPRTSEGGFWHKKIYPNQLWLDGLYMAVPFLAQYGKLTGDPKYFDDAAKQF 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1745881586 214 TLCHKHTYSPETGLYHHAWDESKSQRwanpqDGTSPNFWGRSIGWWFMAMVDVLDYIPDNHPGRASLISWIQGLAESLPN 293
Cdd:COG4225   155 LLTTKYLFDPETGLYYHGWDESREQK-----AGGSPAFWGRGNGWVAMALVDLLDLLPEDHPDRPELLALLKEMAAALAK 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1745881586 294 YQR-DGLWYQVIDQPereGNFPEASVTtqCMYAY--AKAVNKGYIDAQYRTIAEKAFNGLKQTLlleNPDGtlTLTRCCQ 370
Cdd:COG4225   230 YQDeSGLWHQVLDDP---GNYLETSAT--AMFTYalAKGVNKGYLDKKYLPAAEKAWNGLLKKI---DEDG--SLTGVCV 299

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1745881586 371 VGGLGgtpyrdGSFEYYIGEKMRDNDAKATGPFIMGCLQLGK 412
Cdd:COG4225   300 GTGLG------GSLEYYISEPIRTNDPYGVGPFLLAGSEMLK 335
 
Name Accession Description Interval E-value
YesR COG4225
Rhamnogalacturonyl hydrolase YesR [Carbohydrate transport and metabolism];
55-412 2.50e-145

Rhamnogalacturonyl hydrolase YesR [Carbohydrate transport and metabolism];


Pssm-ID: 443369  Cd Length: 336  Bit Score: 416.52  E-value: 2.50e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1745881586  55 FADSEMLRFPkayQLDHGKRLFFGYSQGVGCCAMLDMWKNTGDKRYFTYVEEWADSLINEKgeiHLYDMSTYNLDYINSG 134
Cdd:COG4225     1 VADSQLKRYW---DIDPGKFPKWDYTQGVTLYGLLKLAEATGDKKYLDYIKRWFDFFIDEG---NTYKLPPYNLDDIAPG 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1745881586 135 KVLFDLYKETGKEKYKAAMDLLVE-QLKRQPRTLEGGFWHKLIYQHQMWLDGLYMASPFLARYGAEFNRPDLIDEAVKQF 213
Cdd:COG4225    75 LALLELYEQTGDPKYLKAADTLADwQLNTQPRTSEGGFWHKKIYPNQLWLDGLYMAVPFLAQYGKLTGDPKYFDDAAKQF 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1745881586 214 TLCHKHTYSPETGLYHHAWDESKSQRwanpqDGTSPNFWGRSIGWWFMAMVDVLDYIPDNHPGRASLISWIQGLAESLPN 293
Cdd:COG4225   155 LLTTKYLFDPETGLYYHGWDESREQK-----AGGSPAFWGRGNGWVAMALVDLLDLLPEDHPDRPELLALLKEMAAALAK 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1745881586 294 YQR-DGLWYQVIDQPereGNFPEASVTtqCMYAY--AKAVNKGYIDAQYRTIAEKAFNGLKQTLlleNPDGtlTLTRCCQ 370
Cdd:COG4225   230 YQDeSGLWHQVLDDP---GNYLETSAT--AMFTYalAKGVNKGYLDKKYLPAAEKAWNGLLKKI---DEDG--SLTGVCV 299

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1745881586 371 VGGLGgtpyrdGSFEYYIGEKMRDNDAKATGPFIMGCLQLGK 412
Cdd:COG4225   300 GTGLG------GSLEYYISEPIRTNDPYGVGPFLLAGSEMLK 335
Glyco_hydro_88 pfam07470
Glycosyl Hydrolase Family 88; Unsaturated glucuronyl hydrolase catalyzes the hydrolytic ...
 51-405 8.76e-117

Glycosyl Hydrolase Family 88; Unsaturated glucuronyl hydrolase catalyzes the hydrolytic release of unsaturated glucuronic acids from oligosaccharides (EC:3.2.1.-) produced by the reactions of polysaccharide lyases.


Pssm-ID: 429478  Cd Length: 345  Bit Score: 344.36  E-value: 8.76e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1745881586  51 YAQRFADSEMLRFPKAYQLDHGKRLFFGYSQGVGCCAMLDMWKNTGDKRYFTYVEEWADSLINEKGEIHLydmsTYNLDY 130
Cdd:pfam07470   1 YIDRVAGSFMKRYPDGKVIDLPPDNRWDWTNGVFLYGMLEAYEATGDKEYLDYLKAWADSLIDEGGKILT----PYNLDD 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1745881586 131 INSGKVLFDLYKETGKEKYKAAMDLLVE-QLKRQPRTLEGGFWHKLIYQHQMWLDGLYMASPFLARYGAEFNRPDLIDEA 209
Cdd:pfam07470  77 INIGLTLLDLYEHTGDERYIQAAIELADwVLATPPRTSEGGFWHKDIYPHQMWLDGLFMAGPFLAKYGKLTNEPKYLDEA 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1745881586 210 VKQFTLCHKHTYSPETGLYHHAWDESKSQRWANPqdgtspnFWGRSIGWWFMAMVDVLDYIPDNHPGRASLISWIQGLAE 289
Cdd:pfam07470 157 VYQFLLTRRHLYDPETGLYYHGWDESGTEPWADP-------FWARGNGWYAMALADVLELLPEKHPARQELINILRDLVK 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1745881586 290 SLPNYQR-DGLWYQVIDQPEReGNFPEASVTTQCMYAYAKAVNKGYIDAQYRTIAEKAFNGLKQTLLleNPDGTLTLTRC 368
Cdd:pfam07470 230 ALAKYQDeSGLWHQSLDDPDR-DSYLETSASAGFVYALAKGVNKGYLDKKYLPVAQKAWKALLKNFV--DEDGQLGVVQI 306

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1745881586 369 CQVGGLGGtpyrdgsFEYYIGEKMRDNDAKATGPFIM 405
Cdd:pfam07470 307 CGGTGIGG-------DDYYRSVPYNSNDPYGVGAFLL 336
 
Name Accession Description Interval E-value
YesR COG4225
Rhamnogalacturonyl hydrolase YesR [Carbohydrate transport and metabolism];
55-412 2.50e-145

Rhamnogalacturonyl hydrolase YesR [Carbohydrate transport and metabolism];


Pssm-ID: 443369  Cd Length: 336  Bit Score: 416.52  E-value: 2.50e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1745881586  55 FADSEMLRFPkayQLDHGKRLFFGYSQGVGCCAMLDMWKNTGDKRYFTYVEEWADSLINEKgeiHLYDMSTYNLDYINSG 134
Cdd:COG4225     1 VADSQLKRYW---DIDPGKFPKWDYTQGVTLYGLLKLAEATGDKKYLDYIKRWFDFFIDEG---NTYKLPPYNLDDIAPG 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1745881586 135 KVLFDLYKETGKEKYKAAMDLLVE-QLKRQPRTLEGGFWHKLIYQHQMWLDGLYMASPFLARYGAEFNRPDLIDEAVKQF 213
Cdd:COG4225    75 LALLELYEQTGDPKYLKAADTLADwQLNTQPRTSEGGFWHKKIYPNQLWLDGLYMAVPFLAQYGKLTGDPKYFDDAAKQF 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1745881586 214 TLCHKHTYSPETGLYHHAWDESKSQRwanpqDGTSPNFWGRSIGWWFMAMVDVLDYIPDNHPGRASLISWIQGLAESLPN 293
Cdd:COG4225   155 LLTTKYLFDPETGLYYHGWDESREQK-----AGGSPAFWGRGNGWVAMALVDLLDLLPEDHPDRPELLALLKEMAAALAK 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1745881586 294 YQR-DGLWYQVIDQPereGNFPEASVTtqCMYAY--AKAVNKGYIDAQYRTIAEKAFNGLKQTLlleNPDGtlTLTRCCQ 370
Cdd:COG4225   230 YQDeSGLWHQVLDDP---GNYLETSAT--AMFTYalAKGVNKGYLDKKYLPAAEKAWNGLLKKI---DEDG--SLTGVCV 299

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1745881586 371 VGGLGgtpyrdGSFEYYIGEKMRDNDAKATGPFIMGCLQLGK 412
Cdd:COG4225   300 GTGLG------GSLEYYISEPIRTNDPYGVGPFLLAGSEMLK 335
Glyco_hydro_88 pfam07470
Glycosyl Hydrolase Family 88; Unsaturated glucuronyl hydrolase catalyzes the hydrolytic ...
 51-405 8.76e-117

Glycosyl Hydrolase Family 88; Unsaturated glucuronyl hydrolase catalyzes the hydrolytic release of unsaturated glucuronic acids from oligosaccharides (EC:3.2.1.-) produced by the reactions of polysaccharide lyases.


Pssm-ID: 429478  Cd Length: 345  Bit Score: 344.36  E-value: 8.76e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1745881586  51 YAQRFADSEMLRFPKAYQLDHGKRLFFGYSQGVGCCAMLDMWKNTGDKRYFTYVEEWADSLINEKGEIHLydmsTYNLDY 130
Cdd:pfam07470   1 YIDRVAGSFMKRYPDGKVIDLPPDNRWDWTNGVFLYGMLEAYEATGDKEYLDYLKAWADSLIDEGGKILT----PYNLDD 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1745881586 131 INSGKVLFDLYKETGKEKYKAAMDLLVE-QLKRQPRTLEGGFWHKLIYQHQMWLDGLYMASPFLARYGAEFNRPDLIDEA 209
Cdd:pfam07470  77 INIGLTLLDLYEHTGDERYIQAAIELADwVLATPPRTSEGGFWHKDIYPHQMWLDGLFMAGPFLAKYGKLTNEPKYLDEA 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1745881586 210 VKQFTLCHKHTYSPETGLYHHAWDESKSQRWANPqdgtspnFWGRSIGWWFMAMVDVLDYIPDNHPGRASLISWIQGLAE 289
Cdd:pfam07470 157 VYQFLLTRRHLYDPETGLYYHGWDESGTEPWADP-------FWARGNGWYAMALADVLELLPEKHPARQELINILRDLVK 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1745881586 290 SLPNYQR-DGLWYQVIDQPEReGNFPEASVTTQCMYAYAKAVNKGYIDAQYRTIAEKAFNGLKQTLLleNPDGTLTLTRC 368
Cdd:pfam07470 230 ALAKYQDeSGLWHQSLDDPDR-DSYLETSASAGFVYALAKGVNKGYLDKKYLPVAQKAWKALLKNFV--DEDGQLGVVQI 306

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1745881586 369 CQVGGLGGtpyrdgsFEYYIGEKMRDNDAKATGPFIM 405
Cdd:pfam07470 307 CGGTGIGG-------DDYYRSVPYNSNDPYGVGAFLL 336
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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