|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10153 |
PRK10153 |
DNA-binding transcriptional activator CadC; Provisional |
1-522 |
0e+00 |
|
DNA-binding transcriptional activator CadC; Provisional
Pssm-ID: 236658 [Multi-domain] Cd Length: 517 Bit Score: 806.19 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1747482103 1 MLQPVVRVGEWLVTPSVNQISRKGRQLTLEPRLIDLLVFFARHPGEVLSRDELIENVWTRNVVTSHVVTQSISELRKSLK 80
Cdd:PRK10153 1 MQQPVFRIGEWLVTPSENKISRQGREVTLEPRLIDLLVFFAQHSGEVLSRDELIDHVWDRAIVTDHVVTQSISELRKSLK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1747482103 81 DGDDVSLEYIATVPKRGYKLTVPVIWCTEEGEElapsmEALTPSPSTAVPAPPAAGAPSDVsvPLPDAAAPPPAPTVASA 160
Cdd:PRK10153 81 DGREDNPEYIVTVPKRGYKLVAPVIWYSEEEGE-----EILASSPPPIPEAVPATAEPSES--ANAQFPAPPLTRAVCQS 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1747482103 161 PSGRKRLTTALVWGLFLLALGTCVALVALSSMESRPPVNKARLLLNPRDIDIHLVNGNSCANWSSQHSYAVGLASLITTS 240
Cdd:PRK10153 154 PAKSKRFTTFWVWRLFLLSLGICVLLVAMSSLTYRQPVVKIRQLLNPRDIDFRFQNGNSCNNWSSQLSYADGIGQLLMAD 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1747482103 241 LNTFSTFMVHDKTDYNINEPSSSGKTLTIEFVNQRHYRAQQCFMSVQLVDNADSSTMLDKRYFVTNDNQLTIQNDLMNSL 320
Cdd:PRK10153 234 LNTVSTFVVHDKTNYNINEPSSSGKTLGIAFVNQRHYRAQQCFLSVELVDNADGSVMLSKRYFLTNGNQLSVQNDLSNSL 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1747482103 321 SDALAQPWPARMQAMLRQYQPSQSVALTYFYQSHQLLMKGDVDSLSKASSLLDDVIKRAPDFIYAYAEKTLVDVLRHSQQ 400
Cdd:PRK10153 314 SRALNQPWPERMQERLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQ 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1747482103 401 PLDDKQLAALYSEFERVGAMPGIKDMAIYYQIKAVDSLGKGKVDEANTAINSAIDLEMSWLNYVLLGKVYEMKGENRLAA 480
Cdd:PRK10153 394 PLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAA 473
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 1747482103 481 DSYITAFNLRPGEDTLYWIENGVFQTSVNRVVPYLDNFLSSE 522
Cdd:PRK10153 474 DAYSTAFNLRPGENTLYWIENLVFQTSVETVVPYLYRFLAPS 515
|
|
| CadC_C1 |
pfam18500 |
CadC C-terminal domain 1; CadC is an integral membrane protein of 512 amino acids comprising ... |
201-333 |
4.11e-89 |
|
CadC C-terminal domain 1; CadC is an integral membrane protein of 512 amino acids comprising an N-terminal cytoplasmic DNA-binding domain, a transmembrane helix, and a C-terminal periplasmic domain. CadC belongs to the ToxR-like regulators that encompass biochemically non-modified one-component systems with similar gross topology, including several low pH-induced transcription regulators. Structural analysis of the C-terminal periplasmic domain indicates that it resembles the sensory domain of a (pH-activated) ToxR-like regulator. Furthermore, it is composed of two subdomains with a cavity at their interface that is suited to accommodate cadaverine, the feedback inhibitor of the Cad system. This is the N-terminal subdomain of the C-terminal periplasmic domain. It is composed of five-stranded beta-sheets.
Pssm-ID: 436547 Cd Length: 134 Bit Score: 269.42 E-value: 4.11e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1747482103 201 ARLLLNPRDIDIHLVNGNSCANWSSQHSYAVGLASLITTSLNTFSTFMVHDKTDYNINEPSSSGKTLTIEFVNQRHYRAQ 280
Cdd:pfam18500 1 SRLLLNPRDIDIRMVNGNSCNNWSSQLSYVIGVSELIATSLNTFSTFMVHDKTNYNINEPSSSGKTLTIEFVNQRHYRAQ 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1747482103 281 QCFMSVQLVDNADSSTMLDKRYFVTNDNQLTIQNDLMNSLSDALAQPWPARMQ 333
Cdd:pfam18500 81 QCFMSVKLVDNADGSTMLDKRYFITNDNQLAIQNDLLNSLSKALKQPWPARMQ 133
|
|
| CadC1 |
COG3710 |
DNA-binding winged helix-turn-helix (wHTH) domain [Transcription]; |
5-110 |
1.52e-35 |
|
DNA-binding winged helix-turn-helix (wHTH) domain [Transcription];
Pssm-ID: 442924 [Multi-domain] Cd Length: 106 Bit Score: 128.10 E-value: 1.52e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1747482103 5 VVRVGEWLVTPSVNQISRKGRQLTLEPRLIDLLVFFARHPGEVLSRDELIENVWTRNVVTSHVVTQSISELRKSLKDgDD 84
Cdd:COG3710 2 RYRFGDFRLDPARRELLRDGEPVRLSPRAFDLLLLLLEHPGRVVSRDELLAAVWPGRVVSDNSLTQAISRLRKALGD-DG 80
|
90 100
....*....|....*....|....*.
gi 1747482103 85 VSLEYIATVPKRGYKLTVPVIWCTEE 110
Cdd:COG3710 81 LEPRLIRTVPRRGYRLVAPVEVEAPE 106
|
|
| trans_reg_C |
cd00383 |
DNA-binding effector domain of two-component system response regulators; Bacteria and some ... |
11-100 |
5.02e-22 |
|
DNA-binding effector domain of two-component system response regulators; Bacteria and some eukaryotes use two-component signal transduction systems to detect and respond to changes in the environment. The systems consists of a sensor histidine kinase and a response regulator. The former autophosphorylates a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. This C-terminal effector domain belongs to the winged helix-turn-helix family of transcriptional regulators and contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunit of RNA polymerase.
Pssm-ID: 294013 [Multi-domain] Cd Length: 89 Bit Score: 90.23 E-value: 5.02e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1747482103 11 WLVTPSVNQISRKGRQLTLEPRLIDLLVFFARHPGEVLSRDELIENVWTRN-VVTSHVVTQSISELRKSLkdGDDVSLEY 89
Cdd:cd00383 1 LRLDPARREVTVDGEEVELTPKEFELLELLARNPGRVVSREELLEAVWGYDyEVDDRTVDVHISRLRKKL--EDDPEPRL 78
|
90
....*....|.
gi 1747482103 90 IATVPKRGYKL 100
Cdd:cd00383 79 IKTVRGVGYRL 89
|
|
| Trans_reg_C |
smart00862 |
Transcriptional regulatory protein, C terminal; This domain is almost always found associated ... |
24-100 |
3.39e-19 |
|
Transcriptional regulatory protein, C terminal; This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Pssm-ID: 214866 [Multi-domain] Cd Length: 76 Bit Score: 81.83 E-value: 3.39e-19
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1747482103 24 GRQLTLEPRLIDLLVFFARHPGEVLSRDELIENVWTRN-VVTSHVVTQSISELRKSLKDGDDVslEYIATVPKRGYKL 100
Cdd:smart00862 1 GEPIKLTPKEFRLLELLLRNPGRVVSREELLEAVWGDDeDVDDNTLDVHISRLRKKLEDDGDP--RLIETVRGVGYRL 76
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10153 |
PRK10153 |
DNA-binding transcriptional activator CadC; Provisional |
1-522 |
0e+00 |
|
DNA-binding transcriptional activator CadC; Provisional
Pssm-ID: 236658 [Multi-domain] Cd Length: 517 Bit Score: 806.19 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1747482103 1 MLQPVVRVGEWLVTPSVNQISRKGRQLTLEPRLIDLLVFFARHPGEVLSRDELIENVWTRNVVTSHVVTQSISELRKSLK 80
Cdd:PRK10153 1 MQQPVFRIGEWLVTPSENKISRQGREVTLEPRLIDLLVFFAQHSGEVLSRDELIDHVWDRAIVTDHVVTQSISELRKSLK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1747482103 81 DGDDVSLEYIATVPKRGYKLTVPVIWCTEEGEElapsmEALTPSPSTAVPAPPAAGAPSDVsvPLPDAAAPPPAPTVASA 160
Cdd:PRK10153 81 DGREDNPEYIVTVPKRGYKLVAPVIWYSEEEGE-----EILASSPPPIPEAVPATAEPSES--ANAQFPAPPLTRAVCQS 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1747482103 161 PSGRKRLTTALVWGLFLLALGTCVALVALSSMESRPPVNKARLLLNPRDIDIHLVNGNSCANWSSQHSYAVGLASLITTS 240
Cdd:PRK10153 154 PAKSKRFTTFWVWRLFLLSLGICVLLVAMSSLTYRQPVVKIRQLLNPRDIDFRFQNGNSCNNWSSQLSYADGIGQLLMAD 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1747482103 241 LNTFSTFMVHDKTDYNINEPSSSGKTLTIEFVNQRHYRAQQCFMSVQLVDNADSSTMLDKRYFVTNDNQLTIQNDLMNSL 320
Cdd:PRK10153 234 LNTVSTFVVHDKTNYNINEPSSSGKTLGIAFVNQRHYRAQQCFLSVELVDNADGSVMLSKRYFLTNGNQLSVQNDLSNSL 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1747482103 321 SDALAQPWPARMQAMLRQYQPSQSVALTYFYQSHQLLMKGDVDSLSKASSLLDDVIKRAPDFIYAYAEKTLVDVLRHSQQ 400
Cdd:PRK10153 314 SRALNQPWPERMQERLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQ 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1747482103 401 PLDDKQLAALYSEFERVGAMPGIKDMAIYYQIKAVDSLGKGKVDEANTAINSAIDLEMSWLNYVLLGKVYEMKGENRLAA 480
Cdd:PRK10153 394 PLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAA 473
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 1747482103 481 DSYITAFNLRPGEDTLYWIENGVFQTSVNRVVPYLDNFLSSE 522
Cdd:PRK10153 474 DAYSTAFNLRPGENTLYWIENLVFQTSVETVVPYLYRFLAPS 515
|
|
| CadC_C1 |
pfam18500 |
CadC C-terminal domain 1; CadC is an integral membrane protein of 512 amino acids comprising ... |
201-333 |
4.11e-89 |
|
CadC C-terminal domain 1; CadC is an integral membrane protein of 512 amino acids comprising an N-terminal cytoplasmic DNA-binding domain, a transmembrane helix, and a C-terminal periplasmic domain. CadC belongs to the ToxR-like regulators that encompass biochemically non-modified one-component systems with similar gross topology, including several low pH-induced transcription regulators. Structural analysis of the C-terminal periplasmic domain indicates that it resembles the sensory domain of a (pH-activated) ToxR-like regulator. Furthermore, it is composed of two subdomains with a cavity at their interface that is suited to accommodate cadaverine, the feedback inhibitor of the Cad system. This is the N-terminal subdomain of the C-terminal periplasmic domain. It is composed of five-stranded beta-sheets.
Pssm-ID: 436547 Cd Length: 134 Bit Score: 269.42 E-value: 4.11e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1747482103 201 ARLLLNPRDIDIHLVNGNSCANWSSQHSYAVGLASLITTSLNTFSTFMVHDKTDYNINEPSSSGKTLTIEFVNQRHYRAQ 280
Cdd:pfam18500 1 SRLLLNPRDIDIRMVNGNSCNNWSSQLSYVIGVSELIATSLNTFSTFMVHDKTNYNINEPSSSGKTLTIEFVNQRHYRAQ 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1747482103 281 QCFMSVQLVDNADSSTMLDKRYFVTNDNQLTIQNDLMNSLSDALAQPWPARMQ 333
Cdd:pfam18500 81 QCFMSVKLVDNADGSTMLDKRYFITNDNQLAIQNDLLNSLSKALKQPWPARMQ 133
|
|
| CadC1 |
COG3710 |
DNA-binding winged helix-turn-helix (wHTH) domain [Transcription]; |
5-110 |
1.52e-35 |
|
DNA-binding winged helix-turn-helix (wHTH) domain [Transcription];
Pssm-ID: 442924 [Multi-domain] Cd Length: 106 Bit Score: 128.10 E-value: 1.52e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1747482103 5 VVRVGEWLVTPSVNQISRKGRQLTLEPRLIDLLVFFARHPGEVLSRDELIENVWTRNVVTSHVVTQSISELRKSLKDgDD 84
Cdd:COG3710 2 RYRFGDFRLDPARRELLRDGEPVRLSPRAFDLLLLLLEHPGRVVSRDELLAAVWPGRVVSDNSLTQAISRLRKALGD-DG 80
|
90 100
....*....|....*....|....*.
gi 1747482103 85 VSLEYIATVPKRGYKLTVPVIWCTEE 110
Cdd:COG3710 81 LEPRLIRTVPRRGYRLVAPVEVEAPE 106
|
|
| trans_reg_C |
cd00383 |
DNA-binding effector domain of two-component system response regulators; Bacteria and some ... |
11-100 |
5.02e-22 |
|
DNA-binding effector domain of two-component system response regulators; Bacteria and some eukaryotes use two-component signal transduction systems to detect and respond to changes in the environment. The systems consists of a sensor histidine kinase and a response regulator. The former autophosphorylates a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. This C-terminal effector domain belongs to the winged helix-turn-helix family of transcriptional regulators and contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunit of RNA polymerase.
Pssm-ID: 294013 [Multi-domain] Cd Length: 89 Bit Score: 90.23 E-value: 5.02e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1747482103 11 WLVTPSVNQISRKGRQLTLEPRLIDLLVFFARHPGEVLSRDELIENVWTRN-VVTSHVVTQSISELRKSLkdGDDVSLEY 89
Cdd:cd00383 1 LRLDPARREVTVDGEEVELTPKEFELLELLARNPGRVVSREELLEAVWGYDyEVDDRTVDVHISRLRKKL--EDDPEPRL 78
|
90
....*....|.
gi 1747482103 90 IATVPKRGYKL 100
Cdd:cd00383 79 IKTVRGVGYRL 89
|
|
| Trans_reg_C |
smart00862 |
Transcriptional regulatory protein, C terminal; This domain is almost always found associated ... |
24-100 |
3.39e-19 |
|
Transcriptional regulatory protein, C terminal; This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Pssm-ID: 214866 [Multi-domain] Cd Length: 76 Bit Score: 81.83 E-value: 3.39e-19
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1747482103 24 GRQLTLEPRLIDLLVFFARHPGEVLSRDELIENVWTRN-VVTSHVVTQSISELRKSLKDGDDVslEYIATVPKRGYKL 100
Cdd:smart00862 1 GEPIKLTPKEFRLLELLLRNPGRVVSREELLEAVWGDDeDVDDNTLDVHISRLRKKLEDDGDP--RLIETVRGVGYRL 76
|
|
| Trans_reg_C |
pfam00486 |
Transcriptional regulatory protein, C terminal; |
24-100 |
9.44e-19 |
|
Transcriptional regulatory protein, C terminal;
Pssm-ID: 425712 [Multi-domain] Cd Length: 77 Bit Score: 80.63 E-value: 9.44e-19
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1747482103 24 GRQLTLEPRLIDLLVFFARHPGEVLSRDELIENVWTRN-VVTSHVVTQSISELRKSLKDgDDVSLEYIATVPKRGYKL 100
Cdd:pfam00486 1 GEEVELTPKEFKLLELLAENPGRVVSREQLLEEVWGEDyDVDDNTVDVHISRLRKKLED-DPRDPRLIKTVRGVGYRL 77
|
|
| OmpR |
COG0745 |
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain ... |
3-92 |
1.14e-12 |
|
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain [Signal transduction mechanisms, Transcription];
Pssm-ID: 440508 [Multi-domain] Cd Length: 204 Bit Score: 66.90 E-value: 1.14e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1747482103 3 QPVVRVGEWLvTPSVNQISRKGRQLTLEPRLIDLLVFFARHPGEVLSRDELIENVWTRNVVTSHVVTQSISELRKSLKDg 82
Cdd:COG0745 122 AEVLRVGDLL-DLAAREVTRDGEPVELTPKEFRLLELLMRNPGRVVSREQLLEEVWGYDYGDDRTVDVHISRLRKKLED- 199
|
90
....*....|
gi 1747482103 83 ddvslEYIAT 92
Cdd:COG0745 200 -----DLIET 204
|
|
| PRK12370 |
PRK12370 |
HilA/EilA family virulence transcriptional regulator; |
22-105 |
1.78e-08 |
|
HilA/EilA family virulence transcriptional regulator;
Pssm-ID: 237080 [Multi-domain] Cd Length: 553 Bit Score: 56.78 E-value: 1.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1747482103 22 RKGRQLTLEPRLIDLLVFFARHPGEVLSRDELIENVWTRNVVTSHVVTQSISELRKSLKdgDDVSLEYIATVPKRGYKLT 101
Cdd:PRK12370 29 RSEKKVNIPPKEYAVLVILLEAAGEIVSKNTLLDQVWGDAEVNEESLTRCIYALRRILS--EDKEHRYIETLYGQGYRFN 106
|
....
gi 1747482103 102 VPVI 105
Cdd:PRK12370 107 RPVV 110
|
|
| PRK09836 |
PRK09836 |
DNA-binding transcriptional activator CusR; Provisional |
19-103 |
1.97e-06 |
|
DNA-binding transcriptional activator CusR; Provisional
Pssm-ID: 182102 [Multi-domain] Cd Length: 227 Bit Score: 49.15 E-value: 1.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1747482103 19 QISRKGRQLTLEPRLIDLLVFFARHPGEVLSRDELIENVWTRNVVT-SHVVTQSISELRKslKDGDDVSLEYIATVPKRG 97
Cdd:PRK09836 141 KVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDMNFDSdTNAIDVAVKRLRG--KIDNDFEPKLIQTVRGVG 218
|
....*.
gi 1747482103 98 YKLTVP 103
Cdd:PRK09836 219 YMLEVP 224
|
|
| PRK07239 |
PRK07239 |
bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated |
24-103 |
7.87e-06 |
|
bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Pssm-ID: 235981 [Multi-domain] Cd Length: 381 Bit Score: 48.05 E-value: 7.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1747482103 24 GRQLTLEPRLIDLLVFFARHPGEVLSRDELIeNVWTRNVVTSHVVTQSISELRKSLKDGddvslEYIATVPKRGYKLTVP 103
Cdd:PRK07239 302 GEVKPLSPAPMALLRALAARPGRVVSREDLL-AALPGGGTDEHAVETAVARLRTALGDP-----KLVQTVVKRGYRLAVD 375
|
|
| PRK10161 |
PRK10161 |
phosphate response regulator transcription factor PhoB; |
2-101 |
2.50e-05 |
|
phosphate response regulator transcription factor PhoB;
Pssm-ID: 182277 [Multi-domain] Cd Length: 229 Bit Score: 45.86 E-value: 2.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1747482103 2 LQPVVRVGEWLVTPSVNQISRKGRQLTLEPRLIDLLVFFARHPGEVLSRDELIENVWTRNV-VTSHVVTQSISELRKSLK 80
Cdd:PRK10161 128 VEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVyVEDRTVDVHIRRLRKALE 207
|
90 100
....*....|....*....|..
gi 1747482103 81 -DGDDvslEYIATVPKRGYKLT 101
Cdd:PRK10161 208 pGGHD---RMVQTVRGTGYRFS 226
|
|
| DnrI |
COG3629 |
DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain ... |
19-107 |
2.86e-04 |
|
DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain [Transcription];
Pssm-ID: 442847 [Multi-domain] Cd Length: 244 Bit Score: 42.52 E-value: 2.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1747482103 19 QISRKGRQLTL-EPRLIDLLVFFARHPGEVLSRDELIENVW-------TRNVVTSHVvtqsiSELRKSLKDGDDvslEYI 90
Cdd:COG3629 11 EVRVDGRPVPLgGPKQRALLAYLALRAGRPVSRDRLADLLWgddppasARANLRTYV-----SRLRRALGPAGG---DLL 82
|
90
....*....|....*..
gi 1747482103 91 ATVPkRGYKLTVPVIWC 107
Cdd:COG3629 83 VTRG-GGYRLDVDPDEV 98
|
|
| PRK10710 |
PRK10710 |
DNA-binding transcriptional regulator BaeR; Provisional |
19-99 |
4.37e-04 |
|
DNA-binding transcriptional regulator BaeR; Provisional
Pssm-ID: 182665 [Multi-domain] Cd Length: 240 Bit Score: 41.98 E-value: 4.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1747482103 19 QISRKGRQLTLEPRLIDLLVFFARHPGEVLSRDELIENVWT-RNVVTSHVVTQSISELRKSLKDGDDvSLEYIATVPKRG 97
Cdd:PRK10710 151 QASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDdYRVVTDRTIDSHIKNLRRKLESLDA-EQSFIRAVYGVG 229
|
..
gi 1747482103 98 YK 99
Cdd:PRK10710 230 YR 231
|
|
| PRK11083 |
PRK11083 |
DNA-binding response regulator CreB; Provisional |
3-102 |
1.67e-03 |
|
DNA-binding response regulator CreB; Provisional
Pssm-ID: 236838 [Multi-domain] Cd Length: 228 Bit Score: 39.95 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1747482103 3 QPVVRVGEWLVTPSVNQISRKGRQLTL---EPRLIDLLVffaRHPGEVLSRDELIENVWT-------RNVVTsHVVTqsi 72
Cdd:PRK11083 129 SPVIRIGHFELDEPAARISYFGTPLTLtryEFLLLKTLL---LSPGRVFSRQQLMDIVWEdaqdsydRTVDT-HIKT--- 201
|
90 100 110
....*....|....*....|....*....|
gi 1747482103 73 seLRKSLKdGDDVSLEYIATVPKRGYKLTV 102
Cdd:PRK11083 202 --LRAKLR-AINPDLSPINTHRGMGYSLRP 228
|
|
| PRK10529 |
PRK10529 |
DNA-binding transcriptional activator KdpE; Provisional |
4-81 |
2.34e-03 |
|
DNA-binding transcriptional activator KdpE; Provisional
Pssm-ID: 182522 [Multi-domain] Cd Length: 225 Bit Score: 39.79 E-value: 2.34e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1747482103 4 PVVRVGEWLVTPSVNQISRKGRQLTLEPRLIDLLVFFARHPGEVLSRDELIENVWTRNVVT-SHVVTQSISELRKSLKD 81
Cdd:PRK10529 127 PLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEhSHYLRIYMGHLRQKLEQ 205
|
|
| PRK10701 |
PRK10701 |
DNA-binding transcriptional regulator RstA; Provisional |
19-106 |
2.76e-03 |
|
DNA-binding transcriptional regulator RstA; Provisional
Pssm-ID: 236738 [Multi-domain] Cd Length: 240 Bit Score: 39.62 E-value: 2.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1747482103 19 QISRKGRQLTLEPRLI-------DLLVFFARHPGEVLSRDELIENVwtRNVV---TSHVVTQSISELRKSLkdGDDVSLE 88
Cdd:PRK10701 145 TIDPVNRQVTLAGEEIslstadfDLLWELATHAGQIMDRDALLKNL--RGVSydgLDRSVDVAISRLRKKL--LDNAAEP 220
|
90
....*....|....*....
gi 1747482103 89 Y-IATVPKRGYkLTVPVIW 106
Cdd:PRK10701 221 YrIKTVRNKGY-LFAPHAW 238
|
|
| orf27 |
CHL00148 |
Ycf27; Reviewed |
19-99 |
3.45e-03 |
|
Ycf27; Reviewed
Pssm-ID: 214376 [Multi-domain] Cd Length: 240 Bit Score: 39.31 E-value: 3.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1747482103 19 QISRKGRQLTLEPRLIDLLVFFARHPGEVLSRDELIENVWTRN---VVTSHVVTQSISELRKSLKDgDDVSLEYIATVPK 95
Cdd:CHL00148 152 QVYKNNERIRLTGMEFSLLELLISKSGEIFSRATILKEVWGYTperHIDTRVVDVHISRLRAKLED-DPSNPDLILTARG 230
|
....
gi 1747482103 96 RGYK 99
Cdd:CHL00148 231 TGYL 234
|
|
| PRK11517 |
PRK11517 |
DNA-binding response regulator HprR; |
16-103 |
6.44e-03 |
|
DNA-binding response regulator HprR;
Pssm-ID: 183172 [Multi-domain] Cd Length: 223 Bit Score: 38.34 E-value: 6.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1747482103 16 SVNQ-ISRKGRQLTLEPRLIDLLVFFARHPGEVLSRDELIENVWTRNVVT-SHVVTQSISELRKSLKDGDDVSLeyIATV 93
Cdd:PRK11517 134 SVSQsVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINFDSdTNTVDVAIRRLRAKVDDPFPEKL--IATI 211
|
90
....*....|
gi 1747482103 94 PKRGYKLTVP 103
Cdd:PRK11517 212 RGMGYSFVAV 221
|
|
| |
