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Conserved domains on  [gi|1752738086|gb|KAA9313009|]
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argininosuccinate synthase [Staphylococcus epidermidis]

Protein Classification

argininosuccinate synthase( domain architecture ID 10011457)

argininosuccinate synthase reversibly catalyzes the ATP-dependent condensation of a citrulline with an aspartate to give argininosuccinate

EC:  6.3.4.5
PubMed:  2123815

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK00509 PRK00509
argininosuccinate synthase; Provisional
1-396 0e+00

argininosuccinate synthase; Provisional


:

Pssm-ID: 234785  Cd Length: 399  Bit Score: 726.85  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086   1 MKDKIVLAYSGGLDTSVAVQWLIDK-GYDVVACCLDVGEGKDLDVVYQKALDMGAVECHIIDATKEFSDDYVSYAIKGNL 79
Cdd:PRK00509    1 MKKKVVLAYSGGLDTSVIIKWLKETyGCEVIAFTADVGQGEELEPIREKALKSGASEIYVEDLREEFVRDYVFPAIRANA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086  80 MYENAYPLVSALSRPLIAKKLVEIAEKTNSIGIAHGCTGKGNDQVRFEVAIKALNPKLKAFAPVREWAW-SREEEIDYAI 158
Cdd:PRK00509   81 LYEGKYPLGTALARPLIAKKLVEIARKEGADAVAHGCTGKGNDQVRFELGIAALAPDLKVIAPWREWDLkSREELIAYAE 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 159 KHNIPVSINYDSPYSIDQNLWGRANECGILEDPYAAPPEDAFDLTTPLEETPDNADEIILTFKQGIPVQVDGKDYQLDDL 238
Cdd:PRK00509  161 EHGIPIPVTKKSPYSIDANLWHRSIEGGILEDPWNEPPEDVYEWTVSPEDAPDEPEYVEIEFEKGVPVAINGEALSPAEL 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 239 ILYLNQLAGKHGIGRIDHVENRMVGIKSREIYETPGAEVILKAHKALETITLTKDVAHFKPVIEKQFSEQIYNGLWFSPL 318
Cdd:PRK00509  241 IEELNELAGKHGIGRIDIVENRLVGIKSRGVYETPGGTILIKAHRALESLTLDREVAHFKDELEPKYAELVYNGLWFSPL 320
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1752738086 319 TDSLKLFIDSTQQYVEGDVRIKLFKGNAIVNGRQSPYTLYDEKLATYTKEDAFNQESAVGFIDIYGLPTQVNALLHGG 396
Cdd:PRK00509  321 REALQAFIDETQEHVTGEVRLKLYKGNAIVVGRKSPNSLYDEDLATYEEDDVYDQKDAEGFIKLWGLPSKIAALVNKK 398
 
Name Accession Description Interval E-value
PRK00509 PRK00509
argininosuccinate synthase; Provisional
1-396 0e+00

argininosuccinate synthase; Provisional


Pssm-ID: 234785  Cd Length: 399  Bit Score: 726.85  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086   1 MKDKIVLAYSGGLDTSVAVQWLIDK-GYDVVACCLDVGEGKDLDVVYQKALDMGAVECHIIDATKEFSDDYVSYAIKGNL 79
Cdd:PRK00509    1 MKKKVVLAYSGGLDTSVIIKWLKETyGCEVIAFTADVGQGEELEPIREKALKSGASEIYVEDLREEFVRDYVFPAIRANA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086  80 MYENAYPLVSALSRPLIAKKLVEIAEKTNSIGIAHGCTGKGNDQVRFEVAIKALNPKLKAFAPVREWAW-SREEEIDYAI 158
Cdd:PRK00509   81 LYEGKYPLGTALARPLIAKKLVEIARKEGADAVAHGCTGKGNDQVRFELGIAALAPDLKVIAPWREWDLkSREELIAYAE 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 159 KHNIPVSINYDSPYSIDQNLWGRANECGILEDPYAAPPEDAFDLTTPLEETPDNADEIILTFKQGIPVQVDGKDYQLDDL 238
Cdd:PRK00509  161 EHGIPIPVTKKSPYSIDANLWHRSIEGGILEDPWNEPPEDVYEWTVSPEDAPDEPEYVEIEFEKGVPVAINGEALSPAEL 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 239 ILYLNQLAGKHGIGRIDHVENRMVGIKSREIYETPGAEVILKAHKALETITLTKDVAHFKPVIEKQFSEQIYNGLWFSPL 318
Cdd:PRK00509  241 IEELNELAGKHGIGRIDIVENRLVGIKSRGVYETPGGTILIKAHRALESLTLDREVAHFKDELEPKYAELVYNGLWFSPL 320
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1752738086 319 TDSLKLFIDSTQQYVEGDVRIKLFKGNAIVNGRQSPYTLYDEKLATYTKEDAFNQESAVGFIDIYGLPTQVNALLHGG 396
Cdd:PRK00509  321 REALQAFIDETQEHVTGEVRLKLYKGNAIVVGRKSPNSLYDEDLATYEEDDVYDQKDAEGFIKLWGLPSKIAALVNKK 398
ArgG COG0137
Argininosuccinate synthase [Amino acid transport and metabolism]; Argininosuccinate synthase ...
3-396 0e+00

Argininosuccinate synthase [Amino acid transport and metabolism]; Argininosuccinate synthase is part of the Pathway/BioSystem: Arginine biosynthesis


Pssm-ID: 439907  Cd Length: 397  Bit Score: 682.94  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086   3 DKIVLAYSGGLDTSVAVQWLIDK-GYDVVACCLDVGEGKDLDVVYQKALDMGAVECHIIDATKEFSDDYVSYAIKGNLMY 81
Cdd:COG0137     1 KKVVLAYSGGLDTSVIIPWLKEKyGYEVIAVTADVGQGEDLEAIEEKALKLGASKAYVVDAREEFVEDYVFPAIKANALY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086  82 ENAYPLVSALSRPLIAKKLVEIAEKTNSIGIAHGCTGKGNDQVRFEVAIKALNPKLKAFAPVREWAW-SREEEIDYAIKH 160
Cdd:COG0137    81 EGKYPLGTALARPLIAKKLVEIAREEGADAVAHGCTGKGNDQVRFELAIRALAPDLKIIAPWREWDLkSREEEIEYAEEH 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 161 NIPVSINYDSPYSIDQNLWGRANECGILEDPYAAPPEDAFDLTTPLEETPDNADEIILTFKQGIPVQVDGKDYQLDDLIL 240
Cdd:COG0137   161 GIPVPATKEKPYSIDENLWGRSIEGGELEDPWNEPPEDAYEWTVSPEDAPDEPEYVTITFEKGVPVALNGEKLSPVELIE 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 241 YLNQLAGKHGIGRIDHVENRMVGIKSREIYETPGAEVILKAHKALETITLTKDVAHFKPVIEKQFSEQIYNGLWFSPLTD 320
Cdd:COG0137   241 ELNEIGGKHGVGRIDIVENRLVGIKSRGVYEAPGATILITAHRALESLTLDRETLHFKDILDQKYAELVYNGLWFSPLRE 320
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1752738086 321 SLKLFIDSTQQYVEGDVRIKLFKGNAIVNGRQSPYTLYDEKLATYTKEDAFNQESAVGFIDIYGLPTQVNALLHGG 396
Cdd:COG0137   321 ALDAFIDETQKRVTGTVRLKLYKGNATVVGRKSPYSLYDEDLATYEEDDVFDQKDAEGFIKLFGLPLRVAARVRKK 396
ASS cd01999
argininosuccinate_synthase (ASS); Argininosuccinate synthase (ASS; EC 6.3.4.5) is a urea cycle ...
3-386 0e+00

argininosuccinate_synthase (ASS); Argininosuccinate synthase (ASS; EC 6.3.4.5) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate. In humans, a defect in the ASS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. ASS is a homotetrameric enzyme of about 400 amino-acid residues. An arginine residue seems to be important for the enzyme's catalytic mechanism. The sequences of ASS from various prokaryotes, archaeabacteria and eukaryotes show significant similarity.


Pssm-ID: 467503  Cd Length: 386  Bit Score: 621.09  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086   3 DKIVLAYSGGLDTSVAVQWLIDK-GYDVVACCLDVGEGKDLDVVYQKALDMGAVECHIIDATKEFSDDYVSYAIKGNLMY 81
Cdd:cd01999     1 KKVVLAYSGGLDTSVILKWLKEEyGYEVIAFTADLGQGDEEEEIEEKALKLGAVKVYVVDLREEFAEDYIFPAIKANAIY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086  82 ENAYPLVSALSRPLIAKKLVEIAEKTNSIGIAHGCTGKGNDQVRFEVAIKALNPKLKAFAPVREWA-WSREEEIDYAIKH 160
Cdd:cd01999    81 EGRYPLGTALARPLIAKKLVEVAREEGATAVAHGCTGKGNDQVRFELAIKALAPDLKVIAPWRDWNfLTRAEEIAYAKKH 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 161 NIPVSINYDSPYSIDQNLWGRANECGILEDPYAAPPEDAFDLTTPLEETPDNADEIILTFKQGIPVQVDGKDYQLDDLIL 240
Cdd:cd01999   161 GIPVPVTKKKPYSIDENLWGRSYEGGDLEDPWNEPPEDAFEWTVSPEKAPDEPEYVTIEFEKGVPVAVNGEKLDPVELIE 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 241 YLNQLAGKHGIGRIDHVENRMVGIKSREIYETPGAEVILKAHKALETITLTKDVAHFKPVIEKQFSEQIYNGLWFSPLTD 320
Cdd:cd01999   241 KLNEIAGRHGVGRIDIVENRLVGIKSRGVYEAPGATLLIKAHRDLEDLTLDREVLHFKDIVSRKYAELVYNGLWFDPLRE 320
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1752738086 321 SLKLFIDSTQQYVEGDVRIKLFKGNAIVNGRQSPYTLYDEKLATYTKEDAFNQESAVGFIDIYGLP 386
Cdd:cd01999   321 ALEAFIDKTQERVTGEVRLKLYKGNVIVVGRESPNSLYSEELATYEEGDGFDQKDAEGFIKIHGLQ 386
Arginosuc_synth pfam00764
Arginosuccinate synthase; This family contains a PP-loop motif.
6-389 0e+00

Arginosuccinate synthase; This family contains a PP-loop motif.


Pssm-ID: 279148  Cd Length: 386  Bit Score: 591.24  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086   6 VLAYSGGLDTSVAVQWLIDK-GYDVVACCLDVGEG-KDLDVVYQKALDMGAVECHIIDATKEFSDDYVSYAIKGNLMYEN 83
Cdd:pfam00764   1 VLAYSGGLDTSVCIPWLKEQgGYEVIAVAVDVGQGgEDIDEAREKALKLGAVKHYVIDAKEEFVEDYIFPAIQANALYED 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086  84 AYPLVSALSRPLIAKKLVEIAEKTNSIGIAHGCTGKGNDQVRFEVAIKALNPKLKAFAPVREWAWSREEEIDYAIKHNIP 163
Cdd:pfam00764  81 RYPLGTALARPLIAKKLVEAAKKEGASAVAHGCTGKGNDQVRFEVSFRSLAPDLKVIAPVRDPNLTREEEIEYAEEHGIP 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 164 VSINYDSPYSIDQNLWGRANECGILEDPYAAPPEDAFDLTTPLEETPDNADEIILTFKQGIPVQVDGKDYQLDDLILYLN 243
Cdd:pfam00764 161 IPVTKKSPYSIDENLWGRSIEAGILEDPWNAPPEDIYEWTKDPAKAPDEPDIVEIGFEKGVPVALDGEPVSPLELIEKLN 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 244 QLAGKHGIGRIDHVENRMVGIKSREIYETPGAEVILKAHKALETITLTKDVAHFKPVIEKQFSEQIYNGLWFSPLTDSLK 323
Cdd:pfam00764 241 EIAGAHGVGRIDIVEDRLVGIKSREIYEAPAATVLITAHRDLENLTLTREVLRFKRIVDQKWAELVYDGLWFSPLKEALD 320
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1752738086 324 LFIDSTQQYVEGDVRIKLFKGNAIVNGRQSPYTLYDEKLATYTKEDAFNQESAVGFIDIYGLPTQV 389
Cdd:pfam00764 321 AFIDKTQERVTGTVRVKLHKGSAIVLGRRSPYSLYDEELVSYDEGDTFDQTDATGFIKIHGLQAKI 386
argG TIGR00032
argininosuccinate synthase; argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a ...
4-391 0e+00

argininosuccinate synthase; argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria. [Amino acid biosynthesis, Glutamate family]


Pssm-ID: 199987  Cd Length: 394  Bit Score: 537.76  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086   4 KIVLAYSGGLDTSVAVQWLIDKGYDVVACCLDVGEG-KDLDVVYQKALDMGAVECHIIDATKEFSDDYVSYAIKGNLMYE 82
Cdd:TIGR00032   1 KVVLAYSGGLDTSVCLKWLREKGYEVIAYTADVGQPeEDIDAIPEKALEYGAENHYTIDAREEFVKDYGFAAIQANAFYE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086  83 NAYPLVSALSRPLIAKKLVEIAEKTNSIGIAHGCTGKGNDQVRFEVAIKALNPKLKAFAPVREWAWSREEEIDYAIKHNI 162
Cdd:TIGR00032  81 GTYPLSTALARPLIAKKLVEAAKKEGANAVAHGCTGKGNDQERFERSIRLLNPDLKVIAPWRDLNFTREEEIEYAIQCGI 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 163 PVSINYDSPYSIDQNLWGRANECGILEDPYAAPPEDAFDLT-TPLEETPDNADEIILTFKQGIPVQVDGKDYQLDDLILY 241
Cdd:TIGR00032 161 PYPMSKEKPYSIDENLWGRSIEAGILEDPSTEPPEDIYMWTkFPDEATPDEPEVVTIDFEQGVPVALNGVSLDPVELILE 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 242 LNQLAGKHGIGRIDHVENRMVGIKSREIYETPGAEVILKAHKALETITLTKDVAHFKPVIEKQFSEQIYNGLWFSPLTDS 321
Cdd:TIGR00032 241 ANEIAGKHGVGRIDIIENRIIGLKSREIYEAPGAALLIIAHRDLETLTLTRDVLEFKDIVEEQYSELIYQGLWFDPLAEA 320
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 322 LKLFIDSTQQYVEGDVRIKLFKGNAIVNGRQSPYTLYDEKLATYTKEDAFNQESAVGFIDIYGLPTQVNA 391
Cdd:TIGR00032 321 LDAFIRKTQERVTGTVRVKLFKGNAIVIGRTSPYSLYDEELVSMEKDDVFDPRDAIGFITMRGLQIKDYR 390
 
Name Accession Description Interval E-value
PRK00509 PRK00509
argininosuccinate synthase; Provisional
1-396 0e+00

argininosuccinate synthase; Provisional


Pssm-ID: 234785  Cd Length: 399  Bit Score: 726.85  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086   1 MKDKIVLAYSGGLDTSVAVQWLIDK-GYDVVACCLDVGEGKDLDVVYQKALDMGAVECHIIDATKEFSDDYVSYAIKGNL 79
Cdd:PRK00509    1 MKKKVVLAYSGGLDTSVIIKWLKETyGCEVIAFTADVGQGEELEPIREKALKSGASEIYVEDLREEFVRDYVFPAIRANA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086  80 MYENAYPLVSALSRPLIAKKLVEIAEKTNSIGIAHGCTGKGNDQVRFEVAIKALNPKLKAFAPVREWAW-SREEEIDYAI 158
Cdd:PRK00509   81 LYEGKYPLGTALARPLIAKKLVEIARKEGADAVAHGCTGKGNDQVRFELGIAALAPDLKVIAPWREWDLkSREELIAYAE 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 159 KHNIPVSINYDSPYSIDQNLWGRANECGILEDPYAAPPEDAFDLTTPLEETPDNADEIILTFKQGIPVQVDGKDYQLDDL 238
Cdd:PRK00509  161 EHGIPIPVTKKSPYSIDANLWHRSIEGGILEDPWNEPPEDVYEWTVSPEDAPDEPEYVEIEFEKGVPVAINGEALSPAEL 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 239 ILYLNQLAGKHGIGRIDHVENRMVGIKSREIYETPGAEVILKAHKALETITLTKDVAHFKPVIEKQFSEQIYNGLWFSPL 318
Cdd:PRK00509  241 IEELNELAGKHGIGRIDIVENRLVGIKSRGVYETPGGTILIKAHRALESLTLDREVAHFKDELEPKYAELVYNGLWFSPL 320
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1752738086 319 TDSLKLFIDSTQQYVEGDVRIKLFKGNAIVNGRQSPYTLYDEKLATYTKEDAFNQESAVGFIDIYGLPTQVNALLHGG 396
Cdd:PRK00509  321 REALQAFIDETQEHVTGEVRLKLYKGNAIVVGRKSPNSLYDEDLATYEEDDVYDQKDAEGFIKLWGLPSKIAALVNKK 398
ArgG COG0137
Argininosuccinate synthase [Amino acid transport and metabolism]; Argininosuccinate synthase ...
3-396 0e+00

Argininosuccinate synthase [Amino acid transport and metabolism]; Argininosuccinate synthase is part of the Pathway/BioSystem: Arginine biosynthesis


Pssm-ID: 439907  Cd Length: 397  Bit Score: 682.94  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086   3 DKIVLAYSGGLDTSVAVQWLIDK-GYDVVACCLDVGEGKDLDVVYQKALDMGAVECHIIDATKEFSDDYVSYAIKGNLMY 81
Cdd:COG0137     1 KKVVLAYSGGLDTSVIIPWLKEKyGYEVIAVTADVGQGEDLEAIEEKALKLGASKAYVVDAREEFVEDYVFPAIKANALY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086  82 ENAYPLVSALSRPLIAKKLVEIAEKTNSIGIAHGCTGKGNDQVRFEVAIKALNPKLKAFAPVREWAW-SREEEIDYAIKH 160
Cdd:COG0137    81 EGKYPLGTALARPLIAKKLVEIAREEGADAVAHGCTGKGNDQVRFELAIRALAPDLKIIAPWREWDLkSREEEIEYAEEH 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 161 NIPVSINYDSPYSIDQNLWGRANECGILEDPYAAPPEDAFDLTTPLEETPDNADEIILTFKQGIPVQVDGKDYQLDDLIL 240
Cdd:COG0137   161 GIPVPATKEKPYSIDENLWGRSIEGGELEDPWNEPPEDAYEWTVSPEDAPDEPEYVTITFEKGVPVALNGEKLSPVELIE 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 241 YLNQLAGKHGIGRIDHVENRMVGIKSREIYETPGAEVILKAHKALETITLTKDVAHFKPVIEKQFSEQIYNGLWFSPLTD 320
Cdd:COG0137   241 ELNEIGGKHGVGRIDIVENRLVGIKSRGVYEAPGATILITAHRALESLTLDRETLHFKDILDQKYAELVYNGLWFSPLRE 320
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1752738086 321 SLKLFIDSTQQYVEGDVRIKLFKGNAIVNGRQSPYTLYDEKLATYTKEDAFNQESAVGFIDIYGLPTQVNALLHGG 396
Cdd:COG0137   321 ALDAFIDETQKRVTGTVRLKLYKGNATVVGRKSPYSLYDEDLATYEEDDVFDQKDAEGFIKLFGLPLRVAARVRKK 396
ASS cd01999
argininosuccinate_synthase (ASS); Argininosuccinate synthase (ASS; EC 6.3.4.5) is a urea cycle ...
3-386 0e+00

argininosuccinate_synthase (ASS); Argininosuccinate synthase (ASS; EC 6.3.4.5) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate. In humans, a defect in the ASS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. ASS is a homotetrameric enzyme of about 400 amino-acid residues. An arginine residue seems to be important for the enzyme's catalytic mechanism. The sequences of ASS from various prokaryotes, archaeabacteria and eukaryotes show significant similarity.


Pssm-ID: 467503  Cd Length: 386  Bit Score: 621.09  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086   3 DKIVLAYSGGLDTSVAVQWLIDK-GYDVVACCLDVGEGKDLDVVYQKALDMGAVECHIIDATKEFSDDYVSYAIKGNLMY 81
Cdd:cd01999     1 KKVVLAYSGGLDTSVILKWLKEEyGYEVIAFTADLGQGDEEEEIEEKALKLGAVKVYVVDLREEFAEDYIFPAIKANAIY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086  82 ENAYPLVSALSRPLIAKKLVEIAEKTNSIGIAHGCTGKGNDQVRFEVAIKALNPKLKAFAPVREWA-WSREEEIDYAIKH 160
Cdd:cd01999    81 EGRYPLGTALARPLIAKKLVEVAREEGATAVAHGCTGKGNDQVRFELAIKALAPDLKVIAPWRDWNfLTRAEEIAYAKKH 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 161 NIPVSINYDSPYSIDQNLWGRANECGILEDPYAAPPEDAFDLTTPLEETPDNADEIILTFKQGIPVQVDGKDYQLDDLIL 240
Cdd:cd01999   161 GIPVPVTKKKPYSIDENLWGRSYEGGDLEDPWNEPPEDAFEWTVSPEKAPDEPEYVTIEFEKGVPVAVNGEKLDPVELIE 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 241 YLNQLAGKHGIGRIDHVENRMVGIKSREIYETPGAEVILKAHKALETITLTKDVAHFKPVIEKQFSEQIYNGLWFSPLTD 320
Cdd:cd01999   241 KLNEIAGRHGVGRIDIVENRLVGIKSRGVYEAPGATLLIKAHRDLEDLTLDREVLHFKDIVSRKYAELVYNGLWFDPLRE 320
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1752738086 321 SLKLFIDSTQQYVEGDVRIKLFKGNAIVNGRQSPYTLYDEKLATYTKEDAFNQESAVGFIDIYGLP 386
Cdd:cd01999   321 ALEAFIDKTQERVTGEVRLKLYKGNVIVVGRESPNSLYSEELATYEEGDGFDQKDAEGFIKIHGLQ 386
Arginosuc_synth pfam00764
Arginosuccinate synthase; This family contains a PP-loop motif.
6-389 0e+00

Arginosuccinate synthase; This family contains a PP-loop motif.


Pssm-ID: 279148  Cd Length: 386  Bit Score: 591.24  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086   6 VLAYSGGLDTSVAVQWLIDK-GYDVVACCLDVGEG-KDLDVVYQKALDMGAVECHIIDATKEFSDDYVSYAIKGNLMYEN 83
Cdd:pfam00764   1 VLAYSGGLDTSVCIPWLKEQgGYEVIAVAVDVGQGgEDIDEAREKALKLGAVKHYVIDAKEEFVEDYIFPAIQANALYED 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086  84 AYPLVSALSRPLIAKKLVEIAEKTNSIGIAHGCTGKGNDQVRFEVAIKALNPKLKAFAPVREWAWSREEEIDYAIKHNIP 163
Cdd:pfam00764  81 RYPLGTALARPLIAKKLVEAAKKEGASAVAHGCTGKGNDQVRFEVSFRSLAPDLKVIAPVRDPNLTREEEIEYAEEHGIP 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 164 VSINYDSPYSIDQNLWGRANECGILEDPYAAPPEDAFDLTTPLEETPDNADEIILTFKQGIPVQVDGKDYQLDDLILYLN 243
Cdd:pfam00764 161 IPVTKKSPYSIDENLWGRSIEAGILEDPWNAPPEDIYEWTKDPAKAPDEPDIVEIGFEKGVPVALDGEPVSPLELIEKLN 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 244 QLAGKHGIGRIDHVENRMVGIKSREIYETPGAEVILKAHKALETITLTKDVAHFKPVIEKQFSEQIYNGLWFSPLTDSLK 323
Cdd:pfam00764 241 EIAGAHGVGRIDIVEDRLVGIKSREIYEAPAATVLITAHRDLENLTLTREVLRFKRIVDQKWAELVYDGLWFSPLKEALD 320
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1752738086 324 LFIDSTQQYVEGDVRIKLFKGNAIVNGRQSPYTLYDEKLATYTKEDAFNQESAVGFIDIYGLPTQV 389
Cdd:pfam00764 321 AFIDKTQERVTGTVRVKLHKGSAIVLGRRSPYSLYDEELVSYDEGDTFDQTDATGFIKIHGLQAKI 386
argG TIGR00032
argininosuccinate synthase; argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a ...
4-391 0e+00

argininosuccinate synthase; argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria. [Amino acid biosynthesis, Glutamate family]


Pssm-ID: 199987  Cd Length: 394  Bit Score: 537.76  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086   4 KIVLAYSGGLDTSVAVQWLIDKGYDVVACCLDVGEG-KDLDVVYQKALDMGAVECHIIDATKEFSDDYVSYAIKGNLMYE 82
Cdd:TIGR00032   1 KVVLAYSGGLDTSVCLKWLREKGYEVIAYTADVGQPeEDIDAIPEKALEYGAENHYTIDAREEFVKDYGFAAIQANAFYE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086  83 NAYPLVSALSRPLIAKKLVEIAEKTNSIGIAHGCTGKGNDQVRFEVAIKALNPKLKAFAPVREWAWSREEEIDYAIKHNI 162
Cdd:TIGR00032  81 GTYPLSTALARPLIAKKLVEAAKKEGANAVAHGCTGKGNDQERFERSIRLLNPDLKVIAPWRDLNFTREEEIEYAIQCGI 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 163 PVSINYDSPYSIDQNLWGRANECGILEDPYAAPPEDAFDLT-TPLEETPDNADEIILTFKQGIPVQVDGKDYQLDDLILY 241
Cdd:TIGR00032 161 PYPMSKEKPYSIDENLWGRSIEAGILEDPSTEPPEDIYMWTkFPDEATPDEPEVVTIDFEQGVPVALNGVSLDPVELILE 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 242 LNQLAGKHGIGRIDHVENRMVGIKSREIYETPGAEVILKAHKALETITLTKDVAHFKPVIEKQFSEQIYNGLWFSPLTDS 321
Cdd:TIGR00032 241 ANEIAGKHGVGRIDIIENRIIGLKSREIYEAPGAALLIIAHRDLETLTLTRDVLEFKDIVEEQYSELIYQGLWFDPLAEA 320
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 322 LKLFIDSTQQYVEGDVRIKLFKGNAIVNGRQSPYTLYDEKLATYTKEDAFNQESAVGFIDIYGLPTQVNA 391
Cdd:TIGR00032 321 LDAFIRKTQERVTGTVRVKLFKGNAIVIGRTSPYSLYDEELVSMEKDDVFDPRDAIGFITMRGLQIKDYR 390
PLN00200 PLN00200
argininosuccinate synthase; Provisional
1-396 4.37e-161

argininosuccinate synthase; Provisional


Pssm-ID: 177791  Cd Length: 404  Bit Score: 458.44  E-value: 4.37e-161
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086   1 MKDKIVLAYSGGLDTSVAVQWLIDK-GYDVVACCLDVGEG-KDLDVVYQKALDMGAVECHIIDATKEFSDDYVSYAIKGN 78
Cdd:PLN00200    4 KLNKVVLAYSGGLDTSVILKWLRENyGCEVVCFTADVGQGiEELEGLEAKAKASGAKQLVVKDLREEFVRDYIFPCLRAN 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086  79 LMYENAYPLVSALSRPLIAKKLVEIAEKTNSIGIAHGCTGKGNDQVRFEVAIKALNPKLKAFAPVREWAW-SREEEIDYA 157
Cdd:PLN00200   84 AIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATGKGNDQVRFELTFFALNPELKVVAPWREWDIkGREDLIEYA 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 158 IKHNIPVSINYDSPYSIDQNLWGRANECGILEDPYAAPPEDAFDLTTPLEETPDNADEIILTFKQGIPVQVDGKDYQLDD 237
Cdd:PLN00200  164 KKHNIPVPVTKKSIYSRDRNLWHISYEGDILEDPANEPKEDMFMMSVSPEAAPDQPEYIEIEFEKGLPVAINGKTLSPAT 243
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 238 LILYLNQLAGKHGIGRIDHVENRMVGIKSREIYETPGAEVILKAHKALETITLTKDVAHFKPVIEKQFSEQIYNGLWFSP 317
Cdd:PLN00200  244 LLTKLNEIGGKHGIGRIDMVENRFVGMKSRGVYETPGGTILFAAHRELESLTLDRETMQVKDSLALKYAELVYNGFWFDP 323
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 318 LTDSLKLFIDSTQQYVEGDVRIKLFKGNAIVNGRQSPYTLYDEKLATYTKED-AFNQESAVGFIDIYGLPTQVNALLHGG 396
Cdd:PLN00200  324 ERESMDAFMEKITETTTGSVRLKLYKGNVSVAGRKSPYSLYRQDISSFEEGGgIYNQADAAGFIRLYALRLRTRAMLRKK 403
PRK13820 PRK13820
argininosuccinate synthase; Provisional
1-385 5.27e-159

argininosuccinate synthase; Provisional


Pssm-ID: 237521  Cd Length: 394  Bit Score: 452.85  E-value: 5.27e-159
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086   1 MKDKIVLAYSGGLDTSVAVQWLIDK-GYD-VVACCLDVGEGK-DLDVVYQKAlDMGAVECHIIDATKEFSDDYVSYAIKG 77
Cdd:PRK13820    1 MMKKVVLAYSGGLDTSVCVPLLKEKyGYDeVITVTVDVGQPEeEIKEAEEKA-KKLGDKHYTIDAKEEFAKDYIFPAIKA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086  78 NLMYEnAYPLVSALSRPLIAKKLVEIAEKTNSIGIAHGCTGKGNDQVRFEVAIKALNpkLKAFAPVREWAWSREEEIDYA 157
Cdd:PRK13820   80 NALYE-GYPLGTALARPLIAEKIVEVAEKEGASAIAHGCTGKGNDQLRFEAVFRASD--LEVIAPIRELNLTREWEIEYA 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 158 IKHNIPVSINYDSPYSIDQNLWGRANECGILEDPYAAPPEDAFDLTTPLEETPDNADEIILTFKQGIPVQVDGKDYQLDD 237
Cdd:PRK13820  157 KEKGIPVPVGKEKPWSIDENLWSRSIEGGKLEDPAFEPPEEIYAWTVSPEDAPDEPEIVEIEFEEGVPVAINGEKMDGVE 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 238 LILYLNQLAGKHGIGRIDHVENRMVGIKSREIYETPGAEVILKAHKALETITLTKDVAHFKPVIEKQFSEQIYNGLWFSP 317
Cdd:PRK13820  237 LIRKLNEIAGKHGVGRTDMMEDRVLGLKSRENYEHPAATVLLTAHKALEQLVLTREELKFKEIVDSKWAELAYEGLVDEP 316
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1752738086 318 LTDSLKLFIDSTQQYVEGDVRIKLFKGNAIVNGRQSPYTLYDEKLATYTKEDaFNQESAVGFIDIYGL 385
Cdd:PRK13820  317 LREDLNAFIDKTQERVTGTVTVKLYKGSARVVGRESPYALYSEELVSFDSKT-IDQRDAEGMAKYHGL 383
PRK04527 PRK04527
argininosuccinate synthase; Provisional
1-395 3.64e-80

argininosuccinate synthase; Provisional


Pssm-ID: 235305  Cd Length: 400  Bit Score: 252.06  E-value: 3.64e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086   1 MKDKIVLAYSGGLDTSVAVQWLIDKGYDVVACCLDVG--EGKDLDVVYQKALDMGAVECHIIDATKEFSDDYVSYAIKGN 78
Cdd:PRK04527    1 SSKDIVLAFSGGLDTSFCIPYLQERGYAVHTVFADTGgvDAEERDFIEKRAAELGAASHVTVDGGPAIWEGFVKPLVWAG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086  79 LMYENAYPLVSAlSRPLIAKKLVEIAEKTNSIGIAHGCTGKGNDQVRFEVAIKALNpKLKAFAPVREWAWS----REEEI 154
Cdd:PRK04527   81 EGYQGQYPLLVS-DRYLIVDAALKRAEELGTRIIAHGCTGMGNDQVRFDLAVKALG-DYQIVAPIREIQKEhtqtRAYEQ 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 155 DYAIKHNIPVSINYDSpYSIDQNLWGRANECGILeDPYAAPPEDAFDLTTPLEETPDNADEIILTFKQGIPVQVDGKDYQ 234
Cdd:PRK04527  159 KYLEERGFGVRAKQKA-YTINENLLGVTMSGGEI-DRWEAPGEGARGWCAPRSAWPTEALTVTIKFVEGEAVALDGKPLP 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 235 LDDLILYLNQLAGKHGIGRIDHVENRMVGIKSREIYETPGAEVILKAHKALETITLTKDVAHFKPVIEKQFSEQIYNGLW 314
Cdd:PRK04527  237 GAQILAKLNKLFAQYGVGRGVYTGDTVIGLKGRIVFEAPGLVSLLTAHRALEDAVLTKQQNRFKPDVARKWVELVYEGFY 316
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 315 FSPLTDSLKLFIDSTQQYVEGDVRIKLFKGNAIVNGRQSPYTLyDEKLATYTKEDAFNQESAVGFIDIYGLPT----QVN 390
Cdd:PRK04527  317 HDPLKTDIEAFLKSSQAKVNGEVTLETRGGRVDAVAVRSPHLL-NSKGATYAQSADWGVEEAEGFIKLFGMSStlyaQVN 395

                  ....*
gi 1752738086 391 ALLHG 395
Cdd:PRK04527  396 RSLRS 400
PRK05370 PRK05370
argininosuccinate synthase; Validated
4-370 1.54e-33

argininosuccinate synthase; Validated


Pssm-ID: 235434  Cd Length: 447  Bit Score: 130.10  E-value: 1.54e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086   4 KIVLAYSGGLDTSVAVQWLIDKGYDVVACCLDVGE--GKDLDVVYQKALDMGAVECHIIDATKEFSDDYVSyAIK----- 76
Cdd:PRK05370   13 RVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQpdEDDYDAIPRRAMEYGAENARLIDCRAQLVAEGIA-AIQcgafh 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086  77 ---GNLMYENAYPLVSALSRPLIAKklveiAEKTNSIGI-AHGCTGKGNDQVRFEVAIKALNPKLKAFAPvrewaW---- 148
Cdd:PRK05370   92 istGGVTYFNTTPLGRAVTGTMLVA-----AMKEDGVNIwGDGSTYKGNDIERFYRYGLLTNPELKIYKP-----Wldqd 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 149 ------SREEEIDYAIKHNIPVSINYDSPYSIDQNLWGRANECGILEDPyaappEDAFDLTTPL-------EETPDNADE 215
Cdd:PRK05370  162 fidelgGRAEMSEFLIAHGFDYKMSVEKAYSTDSNMLGATHEAKDLEHL-----NSGIKIVNPImgvafwdEDVEIKAEE 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 216 IILTFKQGIPVQVDGKDYQLD-DLILYLNQLAGKHGIGRIDHVENRMVGIKSREIYETPGAEVILKAHKALETitltkdV 294
Cdd:PRK05370  237 VTVRFEQGRPVALNGKTFSDPvELMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLVT------G 310
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086 295 AHFKPVIEKQFSEQ------IYNGLWFSP----LTDSLKLFIDSTqqyVEGDVRIKLFKGN--AIVNGRqSPYTLYD-EK 361
Cdd:PRK05370  311 IHNEDTIEQYRINGrrlgrlLYQGRWFDPqalmLRESLQRWVASA---ITGEVTLELRRGNdySILNTV-SPNLTYKpER 386

                  ....*....
gi 1752738086 362 LATYTKEDA 370
Cdd:PRK05370  387 LSMEKVESA 395
QueC COG0603
7-cyano-7-deazaguanine synthase (queuosine biosynthesis) [Translation, ribosomal structure and ...
1-61 3.29e-05

7-cyano-7-deazaguanine synthase (queuosine biosynthesis) [Translation, ribosomal structure and biogenesis]; 7-cyano-7-deazaguanine synthase (queuosine biosynthesis) is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440368 [Multi-domain]  Cd Length: 223  Bit Score: 44.77  E-value: 3.29e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1752738086   1 MKDKIVLAYSGGLDTSVAVQWLIDKGYDVVACCLDVG--EGKDLDVVYQKALDMGAVECHIID 61
Cdd:COG0603     1 MMKKAVVLLSGGLDSTTCLAWALARGYEVYALSFDYGqrHRKELEAARRIAKALGVGEHKVID 63
tRNA_Me_trans pfam03054
tRNA methyl transferase HUP domain; This family represents the N-terminal HUP domain in tRNA ...
3-83 2.55e-04

tRNA methyl transferase HUP domain; This family represents the N-terminal HUP domain in tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs.


Pssm-ID: 460787 [Multi-domain]  Cd Length: 202  Bit Score: 41.85  E-value: 2.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086   3 DKIVLAYSGGLDTSVAVQWLIDKGYDVVA-----------------CCldvgEGKDL-DVvyQKALDMGAVECHIIDATK 64
Cdd:pfam03054   1 MKVVVAMSGGVDSSVAAYLLKEQGHNVIGvfmknwdeeqsldeegkCC----SEEDLaDA--QRVCEQLGIPLYVVNFEK 74
                          90
                  ....*....|....*....
gi 1752738086  65 EFSDDYVSYAIKGnlmYEN 83
Cdd:pfam03054  75 EYWEDVFEPFLDE---YKN 90
PRK14664 PRK14664
tRNA-specific 2-thiouridylase MnmA; Provisional
2-115 4.95e-04

tRNA-specific 2-thiouridylase MnmA; Provisional


Pssm-ID: 173127 [Multi-domain]  Cd Length: 362  Bit Score: 41.86  E-value: 4.95e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086   2 KDKIVLAYSGGLDTSVAVQWLIDKGYDVVACCLDVGeGKDLDVVYQKALDMGaVECHIIDATKEFSDDYVSYAIKGNLMY 81
Cdd:PRK14664    5 KKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW-GDEPQDARELAARMG-IEHYVADERVPFKDTIVKNFIDEYRQG 82
                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1752738086  82 ENAYPLVsaLSRPLIAKK-LVEIAEKTNSIGIAHG 115
Cdd:PRK14664   83 RTPNPCV--MCNPLFKFRmLIEWADKLGCAWIATG 115
MnmA_TRMU-like cd01998
MnmA/TRMU family 2-thiouridylases and similar proteins; This family is composed of bacterial ...
4-77 7.52e-04

MnmA/TRMU family 2-thiouridylases and similar proteins; This family is composed of bacterial tRNA-specific 2-thiouridylase MnmA (EC 2.8.1.13) and mitochondrial tRNA-specific 2-thiouridylase 1 (TRMU or MTU1, EC 2.8.1.14). MnmA catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. TRMU/MTU1 catalyzes the 2-thiolation of uridine at the wobble position (U34) of mitochondrial tRNA(Lys), tRNA(Glu) and tRNA(Gln); this is required for the formation of 5-taurinomethyl-2-thiouridine (tm5s2U) of mitochondrial tRNA(Lys), tRNA(Glu), and tRNA(Gln) at the wobble position. This family belongs to the adenine nucleotide alpha hydrolase (AANH) superfamily that also includes other N-type ATP PPases and ATP sulfurylases. It forms an alpha/beta/alpha fold which binds to the adenosine group.


Pssm-ID: 467502 [Multi-domain]  Cd Length: 349  Bit Score: 41.34  E-value: 7.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752738086   4 KIVLAYSGGLDTSVAVQWLIDKGYDVVA---------------CCldvgEGKDLDVVYQKALDMGaVECHIIDATKEFSD 68
Cdd:cd01998     1 KVAVAMSGGVDSSVAAALLKEQGYDVIGvfmknwddednekggCC----SEEDIEDARRVADQLG-IPLYVVDFSEEYWE 75

                  ....*....
gi 1752738086  69 DYVSYAIKG 77
Cdd:cd01998    76 RVFDPFLEE 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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