|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13578 |
PRK13578 |
ornithine decarboxylase; Provisional |
1-719 |
0e+00 |
|
ornithine decarboxylase; Provisional
Pssm-ID: 237434 [Multi-domain] Cd Length: 720 Bit Score: 1574.20 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 1 MQALKIGVSRLCPDCFSTDRTTINIHESDYIDIAAAVMTVSDIYQGLIDEIEMTGFGIPVFVVCQPEERVPAEYLPRVAG 80
Cdd:PRK13578 1 MKSLKIAASRELPSCFSTHREVVALDQTDFTDVAAVVLSVADSRSGILALIKRTGFGIPVFVATEEEEEVPAEVLPRISG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 81 VFEDSETYREHYGRQLEAAAQKYETALRPPFFRALVDYVSQGNSAFDCPGHQGGDFFRRHPAGNQFVSFFGDTLFRADLC 160
Cdd:PRK13578 81 VFELCESNNEFYGRQLETAASKYEENLLPPFFDTLTDYVEMGNSTFDCPGHQGGQFFRKHPAGRQFYDFFGENLFRADMC 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 161 NADVAMGDLLIHEGAPCLAQQHAAAVFNADKTYFVLNGTSSANKVVLNALLAPGDLVLFDRNNHKSNHHGALLQAGATPV 240
Cdd:PRK13578 161 NADVKLGDLLIHEGAAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALIQAGATPV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 241 YLETARNPYGFIGGIDAHCFDERYLRERVREVTPARAAEKRPFRLAVIQLGTYDGTIYNARQVVDTLGPLCDYLLFDSAW 320
Cdd:PRK13578 241 YLETARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAW 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 321 VGYEQFIPMMAPCSPLLLTLNENDPGILVTQSVHKQQAGFSQTSQIHKKDSHIKGQPRYVSHKRMNNAFMMHASTSPFYP 400
Cdd:PRK13578 321 VGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKGQARYCPHKRLNNAFMLHASTSPFYP 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 401 LFAALDINARMHEGEAGRRMWMRCVEQGIDARKMIFESCRAIRPFVPTTVDGRPWQSYETAEIAADLRFFHFEPGERWHA 480
Cdd:PRK13578 401 LFAALDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFFSFEPGEKWHG 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 481 FEGYAPHQYFVDPCKLLLTTPGINTETGEYEAFGVPAAVLASYLRENHIIPEKCDLNSILFLLTPAEEMSKLQQLVAQLA 560
Cdd:PRK13578 481 FEGYAEDQYFVDPCKLLLTTPGIDAETGEYEDFGIPATILANYLRENGIVPEKCDLNSILFLLTPAEDMAKLQQLVAMLA 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 561 RFEALLERDAPLVDVLPSLFKQHQARYEGYTLRQLCQEMHDFYASRNVKQLQKEMFRKAHFPRVAMSPQAAHQAFIRGNI 640
Cdd:PRK13578 561 RFEKHIEDDAPLAEVLPSVYKKNPERYRGYTLRQLCQEMHDLYVSHDVKQLQKEMFRKASFPRVVMNPQDANIAYIRGEV 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 641 ELVRLEQAEGRIAAEGALPYPPGVLCVVPGEIWGGAALHYFQALEDGINLLPGFAPELQGVYVET-CDGRRQVWCYVVSE 719
Cdd:PRK13578 641 ELVRLSEAEGRIAAEGALPYPPGVLCVVPGEIWGGAVQRYFLALEEGINLLPGFAPELQGVYLETdADGRKRAYGYVLKP 720
|
|
| ODC_inducible |
TIGR04301 |
ornithine decarboxylase SpeF; Members of this family are known or trusted examples of ... |
1-718 |
0e+00 |
|
ornithine decarboxylase SpeF; Members of this family are known or trusted examples of ornithine decarboxylase, all encoded in the immediate vicinity of an ornithine-putrescine antiporter. Decarboxylation of ornithine to putrescine, followed by exchange of a putrescine for a new ornithine, is a proton-motive cycle that can be induced by low pH and protect a bacterium against transient exposure to acidic conditions.
Pssm-ID: 275113 [Multi-domain] Cd Length: 719 Bit Score: 1517.72 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 1 MQALKIGVSRLCPDCFSTDRTTINIHESDYIDIAAAVMTVSDIYQGLIDEIEMTGFGIPVFVVCQPEERVPAEYLPRVAG 80
Cdd:TIGR04301 1 MKKLKIAVSELLPDCFSTNREVVDINNTDFTDVAAVVISVDDIKNGVLEQIEETGFGIPVFVILNDEETVPAEILPRVTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 81 VFEDSETYREHYGRQLEAAAQKYETALRPPFFRALVDYVSQGNSAFDCPGHQGGDFFRRHPAGNQFVSFFGDTLFRADLC 160
Cdd:TIGR04301 81 VIDLNESDIDFYGRQIETAATKYEEKLLPPFFGALVKYVEQGNSAFDCPGHQGGQFFRKHPAGRQFYDFFGENLFRSDLC 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 161 NADVAMGDLLIHEGAPCLAQQHAAAVFNADKTYFVLNGTSSANKVVLNALLAPGDLVLFDRNNHKSNHHGALLQAGATPV 240
Cdd:TIGR04301 161 NADVALGDLLIHEGAPCDAQQHAAKVFNADKTYFVLNGTSASNKVVLNALLTPGDLVLFDRNNHKSNHHGALIQAGATPV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 241 YLETARNPYGFIGGIDAHCFDERYLRERVREVTPARAAEKRPFRLAVIQLGTYDGTIYNARQVVDTLGPLCDYLLFDSAW 320
Cdd:TIGR04301 241 YLETARNPFGFIGGIDEHCFEEEYLRELIREVAPERAKEKRPFRLAIIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAW 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 321 VGYEQFIPMMAPCSPLLLTLNENDPGILVTQSVHKQQAGFSQTSQIHKKDSHIKGQPRYVSHKRMNNAFMMHASTSPFYP 400
Cdd:TIGR04301 321 VGYEQFIPMMKDCSPLLLELNPEDPGILVTQSVHKQQAGFSQTSQIHKKDSHIKGQARYCNHKRFNNAFMMHASTSPFYP 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 401 LFAALDINARMHEGEAGRRMWMRCVEQGIDARKMIFESCRAIRPFVPTTVDGRPWQSYETAEIAADLRFFHFEPGERWHA 480
Cdd:TIGR04301 401 LFAALDVNAKMHEGESGRRLWMDCVKTGIEARKLLLKNCKYIRPFIPEMVDGKPWQDYDTDQIANDLRFFNFVPGEKWHS 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 481 FEGYAPHQYFVDPCKLLLTTPGINTETGEYEAFGVPAAVLASYLRENHIIPEKCDLNSILFLLTPAEEMSKLQQLVAQLA 560
Cdd:TIGR04301 481 FEGYGENQYFVDPCKLLLTTPGIDAETGEYEDFGIPATILANFLRENGIIPEKCDLNSILFLLTPAEDMAKMQHLVAQIA 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 561 RFEALLERDAPLVDVLPSLFKQHQARYEGYTLRQLCQEMHDFYASRNVKQLQKEMFRKAHFPRVAMSPQAAHQAFIRGNI 640
Cdd:TIGR04301 561 RFEKLLEEDAPLAEVLPSVYKANEERYKGYTIRQLCQEMHDLYVSRNVKQLQKEMFRKAHFPEVVMNPQEANIEFVRGEA 640
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1755387235 641 ELVRLEQAEGRIAAEGALPYPPGVLCVVPGEIWGGAALHYFQALEDGINLLPGFAPELQGVYVE-TCDGRRQVWCYVVS 718
Cdd:TIGR04301 641 ELVPLEQAEGRIAAEGALPYPPGVLCVVPGEIWGGAVQQYFLALEEGINLLPGFAPELQGVYLEkDEDGRKRAYGYVLK 719
|
|
| OKR_DC_1 |
pfam01276 |
Orn/Lys/Arg decarboxylase, major domain; |
109-551 |
0e+00 |
|
Orn/Lys/Arg decarboxylase, major domain;
Pssm-ID: 396025 [Multi-domain] Cd Length: 417 Bit Score: 668.44 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 109 PPFFRALVDYVSQGNSAFDCPGHQGGDFFRRHPAGNQFVSFFGDTLFRADLCNADVAMGDLLIHEGAPCLAQQHAAAVFN 188
Cdd:pfam01276 1 PPLYKALFKYVRRGNYTFHCPGHQGGAGFQKHPAGRFFYDFFGENLLRIDVCIEDVELGDLLDHEGAIKEAQKYAARVFG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 189 ADKTYFVLNGTSSANKVVLNALLAPGDLVLFDRNNHKSNHHgALLQAGATPVYLETARNPYGFIGGIDAHCFDERYLRER 268
Cdd:pfam01276 81 ADKSYFVVNGTSGSNKTVGMAVCTPGDTILIDRNCHKSIHH-ALMLSGATPVYLEPSRNAYGIIGGIPLHEFQEETLKEA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 269 VREVTPARAaekrpFRLAVIQLGTYDGTIYNARQVVDTLGPLCDYLLFDSAWVGYEQFIPMMAPCSPLLLTlNENDPGIL 348
Cdd:pfam01276 160 IAEVPDAKG-----PRLAVITNPTYDGVLYNAKEIVDTLHHLSDPILFDSAWVGYEQFIPIYADASPMGGE-NENGPGIF 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 349 VTQSVHKQQAGFSQTSQIHKKDSHIkgqpryVSHKRMNNAFMMHASTSPFYPLFAALDINARMHEGEAGRRMWMRCVEQG 428
Cdd:pfam01276 234 VTQSVHKLLAALSQASYIHKKEGHI------VNHDRFNEAFMMHATTSPSYPIFASLDVAAKMLEGNSGRRLWNECVERA 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 429 IDARKMIFE--SCRAIRPFVPTTVDGRPwqsyetaeiaadlrFFHFEPGERWHAFEGYAPHQYFVDPCKLLLTTPGINtE 506
Cdd:pfam01276 308 IEFRKAIDTlnNCEFFRPWNPEIVDGKE--------------CWPFHPGETWHGFEGYADNQYFLDPCKLTILTPGMD-E 372
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 1755387235 507 TGEYEAFGVPAAVLASYLRENHIIPEKCDLNSILFLLTPAEEMSK 551
Cdd:pfam01276 373 DGEYSEFGVPATIVAKWLRENGIVPEKTDLNNILFLFTPGEDRTK 417
|
|
| LdcC |
COG1982 |
Arginine/lysine/ornithine decarboxylase [Amino acid transport and metabolism]; |
103-703 |
0e+00 |
|
Arginine/lysine/ornithine decarboxylase [Amino acid transport and metabolism];
Pssm-ID: 441585 [Multi-domain] Cd Length: 486 Bit Score: 584.00 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 103 YETALRPPFFRALVDYVSQGNSAFDCPGHQGGDFFrrhpaGNQFVSFFGDTLFRADLCNaDVAMGDLLIHEGAPCLAQQH 182
Cdd:COG1982 1 YMDQLLTPLFDALKKYAERGPVSFHVPGHKGGRGF-----GREFYDFFGENVFRLDLTE-LPGLDDLHDPEGVIKEAQEL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 183 AAAVFNADKTYFVLNGTSSANKVVLNALLAPGDLVLFDRNNHKSNHHGaLLQAGATPVYLETA-RNPYGFIGGIDAHCFD 261
Cdd:COG1982 75 AAEAFGADRTFFLVNGTSSGNKAMILAVCGPGDKVLVPRNCHKSVIHG-LILSGAIPVYLNPEiDNELGIIGGITPEAVE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 262 ERYLRervrevTParaaekrPFRLAVIQLGTYDGTIYNARQVVDTLGPLCDYLLFDSAWVGYEQFIPMMaPCSPLLLtln 341
Cdd:COG1982 154 EALIE------HP-------DAKAVLITNPTYYGVCYDLKAIAELAHEHGIPVLVDEAHGAHFGFHPDL-PRSAMEA--- 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 342 endPGILVTQSVHKQQAGFSQTSQIHKKDSHikgqpryVSHKRMNNAFMMHASTSPFYPLFAALDINARMHEGEaGRRMW 421
Cdd:COG1982 217 ---GADLVVQSTHKTLGALTQSSMLHVKGGR-------VDHERVNEALMLLQSTSPSYLLMASLDVARRQMAGE-GEELL 285
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 422 MRCVEQGIDARKMIfescRAIRPFvpttvdgRPWQsyetaeiAADLRffhfepgerwhafegyAPHQYFVDPCKLLLTTP 501
Cdd:COG1982 286 DEALELAIEARKEI----NKIPGL-------YVFG-------PEDLG----------------APGVYDLDPTKLTIDVP 331
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 502 GIntetgeyeafGVPAAVLASYLRENH-IIPEKCDLNSILFLLTPAEEMSKLQQLVAQLARFEALLERDAPLVDVLPSLF 580
Cdd:COG1982 332 GL----------GISGYEVAEYLREEYgIQVELADLYNILFLLSLGDTKEDIERLVAALKELKRLYDKNAPLEEVLPLAF 401
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 581 kqhqaryegytlrqlcqemhdfyasrnvkqlqkemfrkAHFPRVAMSPQAAHQAfirgNIELVRLEQAEGRIAAEGALPY 660
Cdd:COG1982 402 --------------------------------------PPLPELVMSPREAFFA----ETELVPLEEAVGRIAAEMVIPY 439
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 1755387235 661 PPGVLCVVPGEIWGGAALHYFQALEDGINLLPGFA-PELQGVYV 703
Cdd:COG1982 440 PPGIPLLMPGERITEEVIDYLRALEEAGGRFPGFEdPELRTIRV 483
|
|
| Orn_deC_like |
cd00615 |
Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent ... |
110-435 |
1.49e-122 |
|
Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Pssm-ID: 99739 [Multi-domain] Cd Length: 294 Bit Score: 367.73 E-value: 1.49e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 110 PFFRALVDYVSQGNSAFDCPGHQGGDFFRRHpagnqFVSFFGDTLFRADLCNaDVAMGDLLIHEGAPCLAQQHAAAVFNA 189
Cdd:cd00615 1 PLFEALKEYAKRGIISFHVPGHKGGRGFRKS-----FYEFYGENLFKADVTE-LTGLDDLLDPTGPIKEAQELAARAFGA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 190 DKTYFVLNGTSSANKVVLNALLAPGDLVLFDRNNHKSNHHGALLqAGATPVYLETARNPY-GFIGGIDAHCFDERYLrer 268
Cdd:cd00615 75 KHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVL-SGAVPVYLKPERNPYyGIAGGIPPETFKKALI--- 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 269 vrevtparaaEKRPFRLAVIQLGTYDGTIYNARQVVDTLGPLCDYLLFDSAWVGYEQFIPMMAPCSPLLltlnendPGIL 348
Cdd:cd00615 151 ----------EHPDAKAAVITNPTYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMA-------GADI 213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 349 VTQSVHKQQAGFSQTSQIHKKDShikgqprYVSHKRMNNAFMMHASTSPFYPLFAALDINARMHeGEAGRRMWMRCVEQG 428
Cdd:cd00615 214 VVQSTHKTLPALTQGSMIHVKGD-------LVNPDRVNEALNLHQSTSPSYLILASLDVARAMM-ALEGKELVEELIELA 285
|
....*..
gi 1755387235 429 IDARKMI 435
Cdd:cd00615 286 LYARQEI 292
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13578 |
PRK13578 |
ornithine decarboxylase; Provisional |
1-719 |
0e+00 |
|
ornithine decarboxylase; Provisional
Pssm-ID: 237434 [Multi-domain] Cd Length: 720 Bit Score: 1574.20 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 1 MQALKIGVSRLCPDCFSTDRTTINIHESDYIDIAAAVMTVSDIYQGLIDEIEMTGFGIPVFVVCQPEERVPAEYLPRVAG 80
Cdd:PRK13578 1 MKSLKIAASRELPSCFSTHREVVALDQTDFTDVAAVVLSVADSRSGILALIKRTGFGIPVFVATEEEEEVPAEVLPRISG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 81 VFEDSETYREHYGRQLEAAAQKYETALRPPFFRALVDYVSQGNSAFDCPGHQGGDFFRRHPAGNQFVSFFGDTLFRADLC 160
Cdd:PRK13578 81 VFELCESNNEFYGRQLETAASKYEENLLPPFFDTLTDYVEMGNSTFDCPGHQGGQFFRKHPAGRQFYDFFGENLFRADMC 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 161 NADVAMGDLLIHEGAPCLAQQHAAAVFNADKTYFVLNGTSSANKVVLNALLAPGDLVLFDRNNHKSNHHGALLQAGATPV 240
Cdd:PRK13578 161 NADVKLGDLLIHEGAAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALIQAGATPV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 241 YLETARNPYGFIGGIDAHCFDERYLRERVREVTPARAAEKRPFRLAVIQLGTYDGTIYNARQVVDTLGPLCDYLLFDSAW 320
Cdd:PRK13578 241 YLETARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAW 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 321 VGYEQFIPMMAPCSPLLLTLNENDPGILVTQSVHKQQAGFSQTSQIHKKDSHIKGQPRYVSHKRMNNAFMMHASTSPFYP 400
Cdd:PRK13578 321 VGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKGQARYCPHKRLNNAFMLHASTSPFYP 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 401 LFAALDINARMHEGEAGRRMWMRCVEQGIDARKMIFESCRAIRPFVPTTVDGRPWQSYETAEIAADLRFFHFEPGERWHA 480
Cdd:PRK13578 401 LFAALDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFFSFEPGEKWHG 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 481 FEGYAPHQYFVDPCKLLLTTPGINTETGEYEAFGVPAAVLASYLRENHIIPEKCDLNSILFLLTPAEEMSKLQQLVAQLA 560
Cdd:PRK13578 481 FEGYAEDQYFVDPCKLLLTTPGIDAETGEYEDFGIPATILANYLRENGIVPEKCDLNSILFLLTPAEDMAKLQQLVAMLA 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 561 RFEALLERDAPLVDVLPSLFKQHQARYEGYTLRQLCQEMHDFYASRNVKQLQKEMFRKAHFPRVAMSPQAAHQAFIRGNI 640
Cdd:PRK13578 561 RFEKHIEDDAPLAEVLPSVYKKNPERYRGYTLRQLCQEMHDLYVSHDVKQLQKEMFRKASFPRVVMNPQDANIAYIRGEV 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 641 ELVRLEQAEGRIAAEGALPYPPGVLCVVPGEIWGGAALHYFQALEDGINLLPGFAPELQGVYVET-CDGRRQVWCYVVSE 719
Cdd:PRK13578 641 ELVRLSEAEGRIAAEGALPYPPGVLCVVPGEIWGGAVQRYFLALEEGINLLPGFAPELQGVYLETdADGRKRAYGYVLKP 720
|
|
| ODC_inducible |
TIGR04301 |
ornithine decarboxylase SpeF; Members of this family are known or trusted examples of ... |
1-718 |
0e+00 |
|
ornithine decarboxylase SpeF; Members of this family are known or trusted examples of ornithine decarboxylase, all encoded in the immediate vicinity of an ornithine-putrescine antiporter. Decarboxylation of ornithine to putrescine, followed by exchange of a putrescine for a new ornithine, is a proton-motive cycle that can be induced by low pH and protect a bacterium against transient exposure to acidic conditions.
Pssm-ID: 275113 [Multi-domain] Cd Length: 719 Bit Score: 1517.72 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 1 MQALKIGVSRLCPDCFSTDRTTINIHESDYIDIAAAVMTVSDIYQGLIDEIEMTGFGIPVFVVCQPEERVPAEYLPRVAG 80
Cdd:TIGR04301 1 MKKLKIAVSELLPDCFSTNREVVDINNTDFTDVAAVVISVDDIKNGVLEQIEETGFGIPVFVILNDEETVPAEILPRVTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 81 VFEDSETYREHYGRQLEAAAQKYETALRPPFFRALVDYVSQGNSAFDCPGHQGGDFFRRHPAGNQFVSFFGDTLFRADLC 160
Cdd:TIGR04301 81 VIDLNESDIDFYGRQIETAATKYEEKLLPPFFGALVKYVEQGNSAFDCPGHQGGQFFRKHPAGRQFYDFFGENLFRSDLC 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 161 NADVAMGDLLIHEGAPCLAQQHAAAVFNADKTYFVLNGTSSANKVVLNALLAPGDLVLFDRNNHKSNHHGALLQAGATPV 240
Cdd:TIGR04301 161 NADVALGDLLIHEGAPCDAQQHAAKVFNADKTYFVLNGTSASNKVVLNALLTPGDLVLFDRNNHKSNHHGALIQAGATPV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 241 YLETARNPYGFIGGIDAHCFDERYLRERVREVTPARAAEKRPFRLAVIQLGTYDGTIYNARQVVDTLGPLCDYLLFDSAW 320
Cdd:TIGR04301 241 YLETARNPFGFIGGIDEHCFEEEYLRELIREVAPERAKEKRPFRLAIIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAW 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 321 VGYEQFIPMMAPCSPLLLTLNENDPGILVTQSVHKQQAGFSQTSQIHKKDSHIKGQPRYVSHKRMNNAFMMHASTSPFYP 400
Cdd:TIGR04301 321 VGYEQFIPMMKDCSPLLLELNPEDPGILVTQSVHKQQAGFSQTSQIHKKDSHIKGQARYCNHKRFNNAFMMHASTSPFYP 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 401 LFAALDINARMHEGEAGRRMWMRCVEQGIDARKMIFESCRAIRPFVPTTVDGRPWQSYETAEIAADLRFFHFEPGERWHA 480
Cdd:TIGR04301 401 LFAALDVNAKMHEGESGRRLWMDCVKTGIEARKLLLKNCKYIRPFIPEMVDGKPWQDYDTDQIANDLRFFNFVPGEKWHS 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 481 FEGYAPHQYFVDPCKLLLTTPGINTETGEYEAFGVPAAVLASYLRENHIIPEKCDLNSILFLLTPAEEMSKLQQLVAQLA 560
Cdd:TIGR04301 481 FEGYGENQYFVDPCKLLLTTPGIDAETGEYEDFGIPATILANFLRENGIIPEKCDLNSILFLLTPAEDMAKMQHLVAQIA 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 561 RFEALLERDAPLVDVLPSLFKQHQARYEGYTLRQLCQEMHDFYASRNVKQLQKEMFRKAHFPRVAMSPQAAHQAFIRGNI 640
Cdd:TIGR04301 561 RFEKLLEEDAPLAEVLPSVYKANEERYKGYTIRQLCQEMHDLYVSRNVKQLQKEMFRKAHFPEVVMNPQEANIEFVRGEA 640
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1755387235 641 ELVRLEQAEGRIAAEGALPYPPGVLCVVPGEIWGGAALHYFQALEDGINLLPGFAPELQGVYVE-TCDGRRQVWCYVVS 718
Cdd:TIGR04301 641 ELVPLEQAEGRIAAEGALPYPPGVLCVVPGEIWGGAVQQYFLALEEGINLLPGFAPELQGVYLEkDEDGRKRAYGYVLK 719
|
|
| OKR_DC_1 |
pfam01276 |
Orn/Lys/Arg decarboxylase, major domain; |
109-551 |
0e+00 |
|
Orn/Lys/Arg decarboxylase, major domain;
Pssm-ID: 396025 [Multi-domain] Cd Length: 417 Bit Score: 668.44 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 109 PPFFRALVDYVSQGNSAFDCPGHQGGDFFRRHPAGNQFVSFFGDTLFRADLCNADVAMGDLLIHEGAPCLAQQHAAAVFN 188
Cdd:pfam01276 1 PPLYKALFKYVRRGNYTFHCPGHQGGAGFQKHPAGRFFYDFFGENLLRIDVCIEDVELGDLLDHEGAIKEAQKYAARVFG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 189 ADKTYFVLNGTSSANKVVLNALLAPGDLVLFDRNNHKSNHHgALLQAGATPVYLETARNPYGFIGGIDAHCFDERYLRER 268
Cdd:pfam01276 81 ADKSYFVVNGTSGSNKTVGMAVCTPGDTILIDRNCHKSIHH-ALMLSGATPVYLEPSRNAYGIIGGIPLHEFQEETLKEA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 269 VREVTPARAaekrpFRLAVIQLGTYDGTIYNARQVVDTLGPLCDYLLFDSAWVGYEQFIPMMAPCSPLLLTlNENDPGIL 348
Cdd:pfam01276 160 IAEVPDAKG-----PRLAVITNPTYDGVLYNAKEIVDTLHHLSDPILFDSAWVGYEQFIPIYADASPMGGE-NENGPGIF 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 349 VTQSVHKQQAGFSQTSQIHKKDSHIkgqpryVSHKRMNNAFMMHASTSPFYPLFAALDINARMHEGEAGRRMWMRCVEQG 428
Cdd:pfam01276 234 VTQSVHKLLAALSQASYIHKKEGHI------VNHDRFNEAFMMHATTSPSYPIFASLDVAAKMLEGNSGRRLWNECVERA 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 429 IDARKMIFE--SCRAIRPFVPTTVDGRPwqsyetaeiaadlrFFHFEPGERWHAFEGYAPHQYFVDPCKLLLTTPGINtE 506
Cdd:pfam01276 308 IEFRKAIDTlnNCEFFRPWNPEIVDGKE--------------CWPFHPGETWHGFEGYADNQYFLDPCKLTILTPGMD-E 372
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 1755387235 507 TGEYEAFGVPAAVLASYLRENHIIPEKCDLNSILFLLTPAEEMSK 551
Cdd:pfam01276 373 DGEYSEFGVPATIVAKWLRENGIVPEKTDLNNILFLFTPGEDRTK 417
|
|
| LdcC |
COG1982 |
Arginine/lysine/ornithine decarboxylase [Amino acid transport and metabolism]; |
103-703 |
0e+00 |
|
Arginine/lysine/ornithine decarboxylase [Amino acid transport and metabolism];
Pssm-ID: 441585 [Multi-domain] Cd Length: 486 Bit Score: 584.00 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 103 YETALRPPFFRALVDYVSQGNSAFDCPGHQGGDFFrrhpaGNQFVSFFGDTLFRADLCNaDVAMGDLLIHEGAPCLAQQH 182
Cdd:COG1982 1 YMDQLLTPLFDALKKYAERGPVSFHVPGHKGGRGF-----GREFYDFFGENVFRLDLTE-LPGLDDLHDPEGVIKEAQEL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 183 AAAVFNADKTYFVLNGTSSANKVVLNALLAPGDLVLFDRNNHKSNHHGaLLQAGATPVYLETA-RNPYGFIGGIDAHCFD 261
Cdd:COG1982 75 AAEAFGADRTFFLVNGTSSGNKAMILAVCGPGDKVLVPRNCHKSVIHG-LILSGAIPVYLNPEiDNELGIIGGITPEAVE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 262 ERYLRervrevTParaaekrPFRLAVIQLGTYDGTIYNARQVVDTLGPLCDYLLFDSAWVGYEQFIPMMaPCSPLLLtln 341
Cdd:COG1982 154 EALIE------HP-------DAKAVLITNPTYYGVCYDLKAIAELAHEHGIPVLVDEAHGAHFGFHPDL-PRSAMEA--- 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 342 endPGILVTQSVHKQQAGFSQTSQIHKKDSHikgqpryVSHKRMNNAFMMHASTSPFYPLFAALDINARMHEGEaGRRMW 421
Cdd:COG1982 217 ---GADLVVQSTHKTLGALTQSSMLHVKGGR-------VDHERVNEALMLLQSTSPSYLLMASLDVARRQMAGE-GEELL 285
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 422 MRCVEQGIDARKMIfescRAIRPFvpttvdgRPWQsyetaeiAADLRffhfepgerwhafegyAPHQYFVDPCKLLLTTP 501
Cdd:COG1982 286 DEALELAIEARKEI----NKIPGL-------YVFG-------PEDLG----------------APGVYDLDPTKLTIDVP 331
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 502 GIntetgeyeafGVPAAVLASYLRENH-IIPEKCDLNSILFLLTPAEEMSKLQQLVAQLARFEALLERDAPLVDVLPSLF 580
Cdd:COG1982 332 GL----------GISGYEVAEYLREEYgIQVELADLYNILFLLSLGDTKEDIERLVAALKELKRLYDKNAPLEEVLPLAF 401
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 581 kqhqaryegytlrqlcqemhdfyasrnvkqlqkemfrkAHFPRVAMSPQAAHQAfirgNIELVRLEQAEGRIAAEGALPY 660
Cdd:COG1982 402 --------------------------------------PPLPELVMSPREAFFA----ETELVPLEEAVGRIAAEMVIPY 439
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 1755387235 661 PPGVLCVVPGEIWGGAALHYFQALEDGINLLPGFA-PELQGVYV 703
Cdd:COG1982 440 PPGIPLLMPGERITEEVIDYLRALEEAGGRFPGFEdPELRTIRV 483
|
|
| Orn_deC_like |
cd00615 |
Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent ... |
110-435 |
1.49e-122 |
|
Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Pssm-ID: 99739 [Multi-domain] Cd Length: 294 Bit Score: 367.73 E-value: 1.49e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 110 PFFRALVDYVSQGNSAFDCPGHQGGDFFRRHpagnqFVSFFGDTLFRADLCNaDVAMGDLLIHEGAPCLAQQHAAAVFNA 189
Cdd:cd00615 1 PLFEALKEYAKRGIISFHVPGHKGGRGFRKS-----FYEFYGENLFKADVTE-LTGLDDLLDPTGPIKEAQELAARAFGA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 190 DKTYFVLNGTSSANKVVLNALLAPGDLVLFDRNNHKSNHHGALLqAGATPVYLETARNPY-GFIGGIDAHCFDERYLrer 268
Cdd:cd00615 75 KHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVL-SGAVPVYLKPERNPYyGIAGGIPPETFKKALI--- 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 269 vrevtparaaEKRPFRLAVIQLGTYDGTIYNARQVVDTLGPLCDYLLFDSAWVGYEQFIPMMAPCSPLLltlnendPGIL 348
Cdd:cd00615 151 ----------EHPDAKAAVITNPTYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMA-------GADI 213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 349 VTQSVHKQQAGFSQTSQIHKKDShikgqprYVSHKRMNNAFMMHASTSPFYPLFAALDINARMHeGEAGRRMWMRCVEQG 428
Cdd:cd00615 214 VVQSTHKTLPALTQGSMIHVKGD-------LVNPDRVNEALNLHQSTSPSYLILASLDVARAMM-ALEGKELVEELIELA 285
|
....*..
gi 1755387235 429 IDARKMI 435
Cdd:cd00615 286 LYARQEI 292
|
|
| PRK15029 |
PRK15029 |
arginine decarboxylase; Provisional |
45-714 |
3.53e-122 |
|
arginine decarboxylase; Provisional
Pssm-ID: 184989 [Multi-domain] Cd Length: 755 Bit Score: 383.04 E-value: 3.53e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 45 QGLIDEIEMTGFGIPVFVVCQPEERVPA------EYLPRVAGVFEDSETYREhyGRqLEAAAQKYETALRPPFFRALVDY 118
Cdd:PRK15029 73 RQLIGKLHERQQNVPVFLLGDREKALAAmdrdllELVDEFAWILEDTADFIA--GR-AVAAMTRYRQQLLPPLFSALMKY 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 119 VSQGNSAFDCPGHQGGDFFRRHPAGNQFVSFFGDTLFRADLCNADVAMGDLLIHEGAPCLAQQHAAAVFNADKTYFVLNG 198
Cdd:PRK15029 150 SDIHEYSWAAPGHQGGVGFTKTPAGRFYHDYYGENLFRTDMGIERTSLGSLLDHTGAFGESEKYAARVFGADRSWSVVVG 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 199 TSSANKVVLNALLAPGDLVLFDRNNHKSNHHGALLqAGATPVYLETARNPYGFIGGIDAHCFDERYLRERVREVTPARAA 278
Cdd:PRK15029 230 TSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLIL-TGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDK 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 279 EKRPFRLAVIQLGTYDGTIYNARQVVDTLGPLCDYLLFDSAWVGYEQFIPMMAPCSPLL-LTLNENDPGILVTQSVHKQQ 357
Cdd:PRK15029 309 AGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRgEPGDHNGPTVFATHSTHKLL 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 358 AGFSQTSQIHKKDShiKGQpryVSHKRMNNAFMMHASTSPFYPLFAALDINARMHEGEAGRRMWMRCVEQGIDARKMIfe 437
Cdd:PRK15029 389 NALSQASYIHVREG--RGA---INFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAM-- 461
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 438 sCRAIRPFvptTVDG----RPW-----------QSYETAEIAADL-----RFFHFEPGERWHAFEGYAPHQYFVDPCKLL 497
Cdd:PRK15029 462 -ARLYKEF---TADGswffKPWnkevvtdpqtgKTYDFADAPTKLlttvqDCWVMHPGESWHGFKDLPDNWSMLDPIKVS 537
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 498 LTTPGINtETGEYEAFGVPAAVLASYLRENHIIPEKCDLNSILFLLTPAEEMSKLQQLVAQLARFEALLERDAPLVDVLP 577
Cdd:PRK15029 538 ILAPGMG-EDGELEETGVPAALVTAWLGRHGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHYDANTPLAQVMP 616
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 578 SLFKQHQARYEGYTLRQLCQEMHDFYASRNVKQLQKEMFrkAHFPRVAMSPQAAHQAFIRGNIELVRLEQAEGRIAAEGA 657
Cdd:PRK15029 617 ELVEQYPDTYANMGIHDLGDTMFAWLKENNPGARLNEAY--SGLPVAEITPREAYNAIVDNNVELVSIENLPGRIAANSV 694
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 658 LPYPPGVLCVVPGEIWG---GAALHYFQALEDGINLLPGFAPELQGvyVETCDGRRQVWC 714
Cdd:PRK15029 695 IPYPPGIPMLLSGENFGdknSPQVSYLRSLQSWDHHFPGFEHETEG--TEIIDGIYHVMC 752
|
|
| PRK15399 |
PRK15399 |
lysine decarboxylase; |
33-712 |
5.33e-117 |
|
lysine decarboxylase;
Pssm-ID: 185297 [Multi-domain] Cd Length: 713 Bit Score: 367.91 E-value: 5.33e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 33 IAAAVMTVSDIYQGLIDEIEMTGFGIPVFV---------VCQPEERVPAEYLPRVAGVFEDSETYREHYgrqleaaAQKY 103
Cdd:PRK15399 52 ICGVIFDWDEYSLDLCSDINQLNEYLPLYAfinthstmdVSVQDMRMALWFFEYALGAAEDIAIRIRQY-------TNEY 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 104 ETALRPPFFRALVDYVSQGNSAFDCPGHQGGDFFRRHPAGNQFVSFFGDTLFRADLCNADVAMGDLLIHEGAPCLAQQHA 183
Cdd:PRK15399 125 LDNITPPFTKALFTYVKEGKYTFCTPGHMGGTAYQKSPVGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYI 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 184 AAVFNADKTYFVLNGTSSANKVVLNALLAPGDLVLFDRNNHKSNHHgALLQAGATPVYLETARNPYGFIGGIDAHCFDER 263
Cdd:PRK15399 205 ARTFGAEQSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAH-LLMMSDVVPIWLKPTRNALGILGGIPRREFTRD 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 264 YLRERVREVTPARAAEKrpfrlAVIQLGTYDGTIYNARQVVDTLGplCDYLLFDSAWVGYEQFIPMMAPCSPLlltLNEN 343
Cdd:PRK15399 284 SIEEKVAATTQAQWPVH-----AVITNSTYDGLLYNTDWIKQTLD--VPSIHFDSAWVPYTHFHPIYQGKSGM---SGER 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 344 DPG--ILVTQSVHKQQAGFSQTSQIhkkdsHIKGQpryVSHKRMNNAFMMHASTSPFYPLFAALDINARMHEGEAGRRMW 421
Cdd:PRK15399 354 VPGkvIFETQSTHKMLAAFSQASLI-----HIKGE---YDEETFNEAFMMHTSTSPSYPIVASVETAAAMLRGNPGKRLI 425
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 422 MRCVEQGIDARKMIfescRAIRpfvpTTVDG---RPWQSYETAEIAAdlrfFHFEPGERWHAFEGYAPHQYFVDPCKLLL 498
Cdd:PRK15399 426 NRSVERALHFRKEV----QRLR----EESDGwffDIWQPENVDEAEC----WPVAPGEQWHGFKDADADHMFLDPVKVTI 493
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 499 TTPGINtETGEYEAFGVPAAVLASYLRENHIIPEKCDLNSILFLLTPAEEMSKLQQLVAQLARFEALLERDAPLVDVLPS 578
Cdd:PRK15399 494 LTPGMD-EQGNMSEEGIPAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMGLLRGLTEFKRAYDLNLRVKNMLPD 572
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 579 LFKQHQARYEGYTLRQLCQEMHDFYASRNVKQLqkeMFRK-AHFPRVAMSPQAAHQAFIRGNIELVRLEQAEGRIAAEGA 657
Cdd:PRK15399 573 LYAEDPDFYRNMRIQDLAQGIHKLIRKHDLPGL---MLRAfDVLPEMIMTPHQAWQRQIKGEVETVALEQLVGRVSANMI 649
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 1755387235 658 LPYPPGVLCVVPGEIW---GGAALHYFQALEDGINLLPGFAPELQGVYvETCDGRRQV 712
Cdd:PRK15399 650 LPYPPGVPLLMPGEMIteeSRAVLDFLLMLCSIGQHYPGFETDIHGAK-RDEDGVYRV 706
|
|
| PRK15400 |
PRK15400 |
lysine decarboxylase; |
95-712 |
6.60e-114 |
|
lysine decarboxylase;
Pssm-ID: 185298 [Multi-domain] Cd Length: 714 Bit Score: 359.93 E-value: 6.60e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 95 QLEAAAQKYETALRPPFFRALVDYVSQGNSAFDCPGHQGGDFFRRHPAGNQFVSFFGDTLFRADLCNADVAMGDLLIHEG 174
Cdd:PRK15400 116 KIKQTTDEYIDTILPPLTKALFKYVREGKYTFCTPGHMGGTAFQKSPVGSLFYDFFGPNTMKSDISISVSELGSLLDHSG 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 175 APCLAQQHAAAVFNADKTYFVLNGTSSANKVVLNALLAPGDLVLFDRNNHKSNHHgALLQAGATPVYLETARNPYGFIGG 254
Cdd:PRK15400 196 PHKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTH-LMMMSDVTPIYFRPTRNAYGILGG 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 255 IDAHCFDERYLRERVREVTPARAAekrpfRLAVIQLGTYDGTIYNARQVVDTLGplCDYLLFDSAWVGYEQFIPMM-APC 333
Cdd:PRK15400 275 IPQSEFQHATIAKRVKETPNATWP-----VHAVITNSTYDGLLYNTDFIKKTLD--VKSIHFDSAWVPYTNFSPIYeGKC 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 334 SplllTLNENDPG--ILVTQSVHKQQAGFSQTSQIhkkdsHIKGQpryVSHKRMNNAFMMHASTSPFYPLFAALDINARM 411
Cdd:PRK15400 348 G----MSGGRVEGkvIYETQSTHKLLAAFSQASMI-----HVKGD---VNEETFNEAYMMHTTTSPHYGIVASTETAAAM 415
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 412 HEGEAGRRMWMRCVEQGIDARKMIfescRAIRpfvpTTVDG---RPWQSYETAEIAAdlrfFHFEPGERWHAFEGYAPHQ 488
Cdd:PRK15400 416 MKGNAGKRLINGSIERAIKFRKEI----KRLR----TESDGwffDVWQPDHIDTTEC----WPLRSDSTWHGFKNIDNEH 483
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 489 YFVDPCKLLLTTPGINtETGEYEAFGVPAAVLASYLRENHIIPEKCDLNSILFLLTPAEEMSKLQQLVAQLARFEALLER 568
Cdd:PRK15400 484 MYLDPIKVTLLTPGMK-KDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKRAFDL 562
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 569 DAPLVDVLPSLFKQHQARYEGYTLRQLCQEMHDFYASRNVKQLqkeMFRKAH-FPRVAMSPQAAHQAFIRGNIELVRLEQ 647
Cdd:PRK15400 563 NLRVKNMLPSLYREDPEFYENMRIQELAQNIHKLIVHHNLPDL---MYRAFEvLPTMVMTPYAAFQKELHGMTEEVYLDE 639
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1755387235 648 AEGRIAAEGALPYPPGVLCVVPGEIWGGAA---LHYFQALEDGINLLPGFAPELQGVYVETcDGRRQV 712
Cdd:PRK15400 640 MVGRVNANMILPYPPGVPLVMPGEMITEESrpvLEFLQMLCEIGAHYPGFETDIHGAYRQA-DGRYTV 706
|
|
| OKR_DC_1_C |
pfam03711 |
Orn/Lys/Arg decarboxylase, C-terminal domain; |
576-705 |
1.10e-67 |
|
Orn/Lys/Arg decarboxylase, C-terminal domain;
Pssm-ID: 461020 [Multi-domain] Cd Length: 132 Bit Score: 218.55 E-value: 1.10e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 576 LPSLFKQHQARYEGYTLRQLCQEMHDFYASRNVKQLQKEMFRkaHFPRVAMSPQAAHQAFIRGNIELVRLEQAEGRIAAE 655
Cdd:pfam03711 1 LPELVAAYPERYEGMGLRDLCQEMHDFYRENNVARLQKEAFR--SLPEPAMTPAEAYQELVRGEVELVPLDELEGRIAAV 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1755387235 656 GALPYPPGVLCVVPGEIWG---GAALHYFQALEDGINLLPGFAPELQGVYVET 705
Cdd:pfam03711 79 GVLPYPPGIPLLMPGERFGeenRPILDYLLALEEFDNRFPGFETEIHGVYREE 131
|
|
| OKR_DC_1_N |
pfam03709 |
Orn/Lys/Arg decarboxylase, N-terminal domain; This domain has a flavodoxin-like fold, and is ... |
4-103 |
1.06e-25 |
|
Orn/Lys/Arg decarboxylase, N-terminal domain; This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure.
Pssm-ID: 427454 [Multi-domain] Cd Length: 111 Bit Score: 101.93 E-value: 1.06e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 4 LKIGVSRLCPDCFS-TDRTTINIHESD--------YIDIAAAVMTVSDIYQGLIDEIEMTGFGIPVFVVC--QPEERVPA 72
Cdd:pfam03709 1 LKIAASRELAEALErTGREVVDATSTDdllaaietFTDIAAVVLSWDDYAAGLLDEIRRRNFDLPVFLLGetHTSEDVPA 80
|
90 100 110
....*....|....*....|....*....|.
gi 1755387235 73 EYLPRVAGVFEDSETYREHYGRQLEAAAQKY 103
Cdd:pfam03709 81 DVLRLIDGFIELAEDTPEFIARQIEAAAKKY 111
|
|
| AAT_I |
cd01494 |
Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP) ... |
179-369 |
6.89e-18 |
|
Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V).
Pssm-ID: 99742 [Multi-domain] Cd Length: 170 Bit Score: 81.66 E-value: 6.89e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 179 AQQHAAAVFN--ADKTYFVLNGTSsANKVVLNALLAPGDLVLFDRNNHKSNHHGALLQAGATPVYLETARNPYGFIGGid 256
Cdd:cd01494 5 LEEKLARLLQpgNDKAVFVPSGTG-ANEAALLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGYGGLDV-- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1755387235 257 ahcfderylrervreVTPARAAEKRPFRLAVIQLGTYDGTIynaRQVVDTLGPLCD----YLLFDSAWVGYEQFIPMMap 332
Cdd:cd01494 82 ---------------AILEELKAKPNVALIVITPNTTSGGV---LVPLKEIRKIAKeygiLLLVDAASAGGASPAPGV-- 141
|
170 180 190
....*....|....*....|....*....|....*..
gi 1755387235 333 cspllltLNENDPGILVTQSVHKQQAGfSQTSQIHKK 369
Cdd:cd01494 142 -------LIPEGGADVVTFSLHKNLGG-EGGGVVIVK 170
|
|
| |
