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Conserved domains on  [gi|1756871943|gb|KAB1469523|]
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YfhL family 4Fe-4S dicluster ferredoxin [Cronobacter sakazakii]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
di_4Fe-4S_YfhL NF033683
YfhL family 4Fe-4S dicluster ferredoxin;
1-80 6.34e-49

YfhL family 4Fe-4S dicluster ferredoxin;


:

Pssm-ID: 468141 [Multi-domain]  Cd Length: 79  Bit Score: 149.17  E-value: 6.34e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756871943  1 MALLITKKCINCDMCEPECPNEAISMGDNIYQIDTSRCTECVGHYETPTCQKVCPIpNTIIKDPAHAENEEQLWDKFVLL 80
Cdd:NF033683   1 MALLITDECINCDVCEPECPNEAISMGDEIYEIDPDRCTECVGHYDEPQCVQVCPV-DCIIPDPDHVETQEQLMEKYERL 79
 
Name Accession Description Interval E-value
di_4Fe-4S_YfhL NF033683
YfhL family 4Fe-4S dicluster ferredoxin;
1-80 6.34e-49

YfhL family 4Fe-4S dicluster ferredoxin;


Pssm-ID: 468141 [Multi-domain]  Cd Length: 79  Bit Score: 149.17  E-value: 6.34e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756871943  1 MALLITKKCINCDMCEPECPNEAISMGDNIYQIDTSRCTECVGHYETPTCQKVCPIpNTIIKDPAHAENEEQLWDKFVLL 80
Cdd:NF033683   1 MALLITDECINCDVCEPECPNEAISMGDEIYEIDPDRCTECVGHYDEPQCVQVCPV-DCIIPDPDHVETQEQLMEKYERL 79
COG2768 COG2768
Uncharacterized Fe-S cluster protein [Function unknown];
1-55 1.88e-11

Uncharacterized Fe-S cluster protein [Function unknown];


Pssm-ID: 442050 [Multi-domain]  Cd Length: 74  Bit Score: 53.97  E-value: 1.88e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1756871943  1 MALLITKKCINCDMCEPECPNEAISMGDNIYQIDTSRCTECvghyetPTCQKVCP 55
Cdd:COG2768    5 KPYVDEEKCIGCGACVKVCPVGAISIEDGKAVIDPEKCIGC------GACIEVCP 53
PRK07118 PRK07118
Fe-S cluster domain-containing protein;
9-55 6.03e-07

Fe-S cluster domain-containing protein;


Pssm-ID: 235941 [Multi-domain]  Cd Length: 280  Bit Score: 44.92  E-value: 6.03e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1756871943   9 CINCDMCEPECPNEAISMGDNIYQIDTSRCTECvghyetPTCQKVCP 55
Cdd:PRK07118  215 CIGCGKCVKACPAGAITMENNLAVIDQEKCTSC------GKCVEKCP 255
NuoI TIGR01971
NADH-quinone oxidoreductase, chain I; This model represents the I subunit (one of 14: A->N) of ...
 8-55 4.07e-05

NADH-quinone oxidoreductase, chain I; This model represents the I subunit (one of 14: A->N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes. [Energy metabolism, Electron transport]


Pssm-ID: 273902 [Multi-domain]  Cd Length: 122  Bit Score: 38.94  E-value: 4.07e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1756871943   8 KCINCDMCEPECPNEAISMGD----------NIYQIDTSRCTECvghyetPTCQKVCP 55
Cdd:TIGR01971  44 KCIGCTLCAAVCPADAIRVVPaegedgkrrlKFYEINFGRCIFC------GLCEEACP 95
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 8-55 4.37e-05

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 38.92  E-value: 4.37e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1756871943   8 KCINCDMCEPECPNEAISMGDNI-YQIDTSRCTECvghyetPTCQKVCP 55
Cdd:cd10549    79 KCIGCGLCVKVCPVDAITLEDELeIVIDKEKCIGC------GICAEVCP 121
Fer4_7 pfam12838
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ...
 9-55 1.90e-03

4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.


Pssm-ID: 463724 [Multi-domain]  Cd Length: 51  Bit Score: 33.27  E-value: 1.90e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 1756871943  9 CINCDMCEPECPNEAISM-------GDNIYQIDTSRCTECvghyetPTCQKVCP 55
Cdd:pfam12838  1 CIGCGACVAACPVGAITLdevgekkGTKTVVIDPERCVGC------GACVAVCP 48
 
Name Accession Description Interval E-value
di_4Fe-4S_YfhL NF033683
YfhL family 4Fe-4S dicluster ferredoxin;
1-80 6.34e-49

YfhL family 4Fe-4S dicluster ferredoxin;


Pssm-ID: 468141 [Multi-domain]  Cd Length: 79  Bit Score: 149.17  E-value: 6.34e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756871943  1 MALLITKKCINCDMCEPECPNEAISMGDNIYQIDTSRCTECVGHYETPTCQKVCPIpNTIIKDPAHAENEEQLWDKFVLL 80
Cdd:NF033683   1 MALLITDECINCDVCEPECPNEAISMGDEIYEIDPDRCTECVGHYDEPQCVQVCPV-DCIIPDPDHVETQEQLMEKYERL 79
COG2768 COG2768
Uncharacterized Fe-S cluster protein [Function unknown];
1-55 1.88e-11

Uncharacterized Fe-S cluster protein [Function unknown];


Pssm-ID: 442050 [Multi-domain]  Cd Length: 74  Bit Score: 53.97  E-value: 1.88e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1756871943  1 MALLITKKCINCDMCEPECPNEAISMGDNIYQIDTSRCTECvghyetPTCQKVCP 55
Cdd:COG2768    5 KPYVDEEKCIGCGACVKVCPVGAISIEDGKAVIDPEKCIGC------GACIEVCP 53
NuoI COG1143
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy ...
 6-55 3.46e-08

Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]; Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440758 [Multi-domain]  Cd Length: 66  Bit Score: 45.51  E-value: 3.46e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 1756871943  6 TKKCINCDMCEPECPNEAISMGDN----IYQIDTSRCTECVghyetpTCQKVCP 55
Cdd:COG1143    1 EDKCIGCGLCVRVCPVDAITIEDGepgkVYVIDPDKCIGCG------LCVEVCP 48
IorA COG4231
TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and ...
 5-55 4.57e-07

TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and conversion];


Pssm-ID: 443375 [Multi-domain]  Cd Length: 76  Bit Score: 43.11  E-value: 4.57e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 1756871943  5 ITKKCINCDMCEPECPNEAISMGDNIYQIDTSRCTECVghyetpTCQKVCP 55
Cdd:COG4231   20 DEDKCTGCGACVKVCPADAIEEGDGKAVIDPDLCIGCG------SCVQVCP 64
PRK07118 PRK07118
Fe-S cluster domain-containing protein;
9-55 6.03e-07

Fe-S cluster domain-containing protein;


Pssm-ID: 235941 [Multi-domain]  Cd Length: 280  Bit Score: 44.92  E-value: 6.03e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1756871943   9 CINCDMCEPECPNEAISMGDNIYQIDTSRCTECvghyetPTCQKVCP 55
Cdd:PRK07118  215 CIGCGKCVKACPAGAITMENNLAVIDQEKCTSC------GKCVEKCP 255
DsrA COG2221
Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion ...
 8-55 3.37e-06

Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion transport and metabolism];


Pssm-ID: 441823 [Multi-domain]  Cd Length: 69  Bit Score: 40.42  E-value: 3.37e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 1756871943  8 KCINCDMCEPECPNEAISMGDNIYQIDTSRCTECvGHyetptCQKVCP 55
Cdd:COG2221   16 KCIGCGLCVAVCPTGAISLDDGKLVIDEEKCIGC-GA-----CIRVCP 57
Nar1 COG4624
Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];
8-55 6.75e-06

Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];


Pssm-ID: 443663 [Multi-domain]  Cd Length: 450  Bit Score: 42.32  E-value: 6.75e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1756871943   8 KCINCDMCEPECPNEAISMGDNIYQIDTSRCTECvGHyetptCQKVCP 55
Cdd:COG4624    92 KCKNCYPCVRACPVKAIKVDDGKAEIDEEKCISC-GQ-----CVAVCP 133
NapF COG1145
Ferredoxin [Energy production and conversion];
6-55 1.72e-05

Ferredoxin [Energy production and conversion];


Pssm-ID: 440760 [Multi-domain]  Cd Length: 238  Bit Score: 40.86  E-value: 1.72e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1756871943   6 TKKCINCDMCEPECPNEAISMGDN--IYQIDTSRCTECVGhyetptCQKVCP 55
Cdd:COG1145   181 AEKCIGCGLCVKVCPTGAIRLKDGkpQIVVDPDKCIGCGA------CVKVCP 226
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
8-55 1.90e-05

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 41.00  E-value: 1.90e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1756871943   8 KCINCDMCEPECPNEAISM-GDNIYQIDTSRCTECvGhyetpTCQKVCP 55
Cdd:COG1148   497 KCTGCGRCVEVCPYGAISIdEKGVAEVNPALCKGC-G-----TCAAACP 539
PRK13795 PRK13795
hypothetical protein; Provisional
 8-56 3.85e-05

hypothetical protein; Provisional


Pssm-ID: 237510 [Multi-domain]  Cd Length: 636  Bit Score: 39.98  E-value: 3.85e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1756871943   8 KCINCDMCEPECPNEAISMGDNIYQI--DTSRCTECVghyetpTCQKVCPI 56
Cdd:PRK13795  582 ECVGCGVCVGACPTGAIRIEEGKRKIsvDEEKCIHCG------KCTEVCPV 626
PorD COG1144
Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta ...
 4-55 4.03e-05

Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Energy production and conversion]; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit is part of the Pathway/BioSystem: Pyruvate oxidation


Pssm-ID: 440759 [Multi-domain]  Cd Length: 84  Bit Score: 38.11  E-value: 4.03e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 1756871943  4 LITKKCINCDMCEPECPNEAISMGDN-IYQIDTSRCTECvghyetPTCQKVCP 55
Cdd:COG1144   27 VDEDKCIGCGLCWIVCPDGAIRVDDGkYYGIDYDYCKGC------GICAEVCP 73
NuoI TIGR01971
NADH-quinone oxidoreductase, chain I; This model represents the I subunit (one of 14: A->N) of ...
 8-55 4.07e-05

NADH-quinone oxidoreductase, chain I; This model represents the I subunit (one of 14: A->N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes. [Energy metabolism, Electron transport]


Pssm-ID: 273902 [Multi-domain]  Cd Length: 122  Bit Score: 38.94  E-value: 4.07e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1756871943   8 KCINCDMCEPECPNEAISMGD----------NIYQIDTSRCTECvghyetPTCQKVCP 55
Cdd:TIGR01971  44 KCIGCTLCAAVCPADAIRVVPaegedgkrrlKFYEINFGRCIFC------GLCEEACP 95
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 8-55 4.37e-05

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 38.92  E-value: 4.37e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1756871943   8 KCINCDMCEPECPNEAISMGDNI-YQIDTSRCTECvghyetPTCQKVCP 55
Cdd:cd10549    79 KCIGCGLCVKVCPVDAITLEDELeIVIDKEKCIGC------GICAEVCP 121
COG1149 COG1149
MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function ...
 1-55 6.79e-05

MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function prediction only];


Pssm-ID: 440763 [Multi-domain]  Cd Length: 68  Bit Score: 37.40  E-value: 6.79e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 1756871943  1 MALLITKKCINCDMCEPECPNEAISMGD-NIYQIDTSRCTECVGhyetptCQKVCP 55
Cdd:COG1149    5 IPVIDEEKCIGCGLCVEVCPEGAIKLDDgGAPVVDPDLCTGCGA------CVGVCP 54
HycB COG1142
Fe-S-cluster-containing hydrogenase component 2 [Energy production and conversion];
4-55 1.27e-04

Fe-S-cluster-containing hydrogenase component 2 [Energy production and conversion];


Pssm-ID: 440757 [Multi-domain]  Cd Length: 138  Bit Score: 37.71  E-value: 1.27e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1756871943   4 LITKKCINCDMCEPECPNEAISMGDNIYQIDTSRCTECVGHYETPTCQKVCP 55
Cdd:COG1142    78 VDEEKCIGCGLCVLACPFGAITMVGEKSRAVAVKCDLCGGREGGPACVEACP 129
PRK05888 PRK05888
NADH-quinone oxidoreductase subunit NuoI;
8-55 2.41e-04

NADH-quinone oxidoreductase subunit NuoI;


Pssm-ID: 235637 [Multi-domain]  Cd Length: 164  Bit Score: 37.17  E-value: 2.41e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1756871943   8 KCINCDMCEPECPNEAISM--GDN--------IYQIDTSRCTECvgHYetptCQKVCP 55
Cdd:PRK05888   59 RCIACKLCAAICPADAITIeaAERedgrrrttRYDINFGRCIFC--GF----CEEACP 110
PRK12809 PRK12809
putative oxidoreductase Fe-S binding subunit; Reviewed
 4-55 7.07e-04

putative oxidoreductase Fe-S binding subunit; Reviewed


Pssm-ID: 183762 [Multi-domain]  Cd Length: 639  Bit Score: 36.54  E-value: 7.07e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1756871943   4 LITKKCINCDMCEPECPNEAISMGDNIYQidtsRCTECVGHYE-TPTCQKVCP 55
Cdd:PRK12809   82 LDEQKCIGCKRCAIACPFGVVEMVDTIAQ----KCDLCNQRSSgTQACIEVCP 130
PRK00783 PRK00783
DNA-directed RNA polymerase subunit D; Provisional
 5-63 1.19e-03

DNA-directed RNA polymerase subunit D; Provisional


Pssm-ID: 234837 [Multi-domain]  Cd Length: 263  Bit Score: 35.63  E-value: 1.19e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756871943   5 ITKKCINCDMCEPECPNEAISMGDNIYQI-DTSRCTECvghyetPTCQKVCPIPNTIIKD 63
Cdd:PRK00783  167 VSEDCDECEKCVEACPRGVLELKEGKLVVtDLLNCSLC------KLCERACPGKAIRVSD 220
porD PRK09625
pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
 9-76 1.24e-03

pyruvate flavodoxin oxidoreductase subunit delta; Reviewed


Pssm-ID: 236596 [Multi-domain]  Cd Length: 133  Bit Score: 35.11  E-value: 1.24e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1756871943   9 CINCDMCEPECPNEAI-SMGDNIYQIDTSRCTECvghyetPTCQKVCPI-PNTIIKDPAHAENEEQL--WDK 76
Cdd:PRK09625   61 CINCFNCWVYCPDAAIlSRDKKLKGVDYSHCKGC------GVCVEVCPTnPKSLLMFEEQIENETALtqWPK 126
PreA COG1146
NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and ...
 1-55 1.45e-03

NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and metabolism];


Pssm-ID: 440761 [Multi-domain]  Cd Length: 67  Bit Score: 33.91  E-value: 1.45e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1756871943  1 MALLITKKCINCDMCEPECPNEAISMGDN---IYQIDTSRCTECvghyetPTCQKVCP 55
Cdd:COG1146    2 MPVIDTDKCIGCGACVEVCPVDVLELDEEgkkALVINPEECIGC------GACELVCP 53
PRK12769 PRK12769
putative oxidoreductase Fe-S binding subunit; Reviewed
 4-55 1.84e-03

putative oxidoreductase Fe-S binding subunit; Reviewed


Pssm-ID: 183733 [Multi-domain]  Cd Length: 654  Bit Score: 35.11  E-value: 1.84e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1756871943   4 LITKKCINCDMCEPECPNEAISM-----GDNIYQIDTSRCTECVGHYETPTCQKVCP 55
Cdd:PRK12769   82 VNQQKCIGCKSCVVACPFGTMQIvltpvAAGKVKATAHKCDLCAGRENGPACVENCP 138
Fer4_7 pfam12838
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ...
 9-55 1.90e-03

4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.


Pssm-ID: 463724 [Multi-domain]  Cd Length: 51  Bit Score: 33.27  E-value: 1.90e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 1756871943  9 CINCDMCEPECPNEAISM-------GDNIYQIDTSRCTECvghyetPTCQKVCP 55
Cdd:pfam12838  1 CIGCGACVAACPVGAITLdevgekkGTKTVVIDPERCVGC------GACVAVCP 48
PRK07118 PRK07118
Fe-S cluster domain-containing protein;
9-55 4.54e-03

Fe-S cluster domain-containing protein;


Pssm-ID: 235941 [Multi-domain]  Cd Length: 280  Bit Score: 34.14  E-value: 4.54e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1756871943   9 CINCDMCEPECPNEAISMGDNIYQIDTSRCTECvghyetPTCQKVCP 55
Cdd:PRK07118  141 CLGLGSCVAACPFDAIHIENGLPVVDEDKCTGC------GACVKACP 181
PRK05888 PRK05888
NADH-quinone oxidoreductase subunit NuoI;
8-29 4.81e-03

NADH-quinone oxidoreductase subunit NuoI;


Pssm-ID: 235637 [Multi-domain]  Cd Length: 164  Bit Score: 33.70  E-value: 4.81e-03
                          10        20
                  ....*....|....*....|..
gi 1756871943   8 KCINCDMCEPECPNEAISMGDN 29
Cdd:PRK05888   98 RCIFCGFCEEACPTDAIVETPD 119
HycB COG1142
Fe-S-cluster-containing hydrogenase component 2 [Energy production and conversion];
9-56 5.31e-03

Fe-S-cluster-containing hydrogenase component 2 [Energy production and conversion];


Pssm-ID: 440757 [Multi-domain]  Cd Length: 138  Bit Score: 33.48  E-value: 5.31e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1756871943   9 CINCDM--CEPECPNEAISMGDNIYQIDTSRCTECVghyetpTCQKVCPI 56
Cdd:COG1142    52 CRHCEDapCAEVCPVGAITRDDGAVVVDEEKCIGCG------LCVLACPF 95
FDH_b_like cd10562
uncharacterized subfamily of beta subunit of formate dehydrogenase; This subfamily includes ...
 8-55 8.77e-03

uncharacterized subfamily of beta subunit of formate dehydrogenase; This subfamily includes the beta-subunit of formate dehydrogenases that are as yet uncharacterized. Members of the DMSO reductase family include formate dehydrogenase N and O (FDH-N, FDH-O) and tungsten-containing formate dehydrogenase (W-FDH) and other similar proteins. FDH-N, a major component of nitrate respiration of Escherichia coli, is involved in the major anaerobic respiratory pathway in the presence of nitrate, catalyzing the oxidation of formate to carbon dioxide at the expense of nitrate reduction to nitrite. It forms a heterotrimer; the alpha-subunit (FDH-G) is the catalytic site of formate oxidation and membrane-associated, incorporating a selenocysteine (SeCys) residue and a [4Fe/4S] cluster in addition to two bis-MGD cofactors, the beta subunit (FDH-H) contains four [4Fe/4S] clusters which transfer the electrons from the alpha subunit to the gamma-subunit (FDH-I), a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. W-FDH contains a tungsten instead of molybdenum at the catalytic center. This enzyme seems to be exclusively found in organisms such as hyperthermophilic archaea that live in extreme environments. It is a heterodimer of a large and a small subunit; the large subunit harbors the W site and one [4Fe-4S] center and the small subunit, containing three [4Fe-4S] clusters, functions to transfer electrons.


Pssm-ID: 319884 [Multi-domain]  Cd Length: 161  Bit Score: 33.05  E-value: 8.77e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1756871943   8 KCINCDMCEPECPNEAISMGDNIYQIdtSRCTECVGHYE---TPTCQKVCP 55
Cdd:cd10562   101 KCIGCGYCVAACPFDVPRYDETTNKI--TKCTLCFDRIEngmQPACVKTCP 149
Fer4_9 pfam13187
4Fe-4S dicluster domain;
8-55 8.78e-03

4Fe-4S dicluster domain;


Pssm-ID: 463801 [Multi-domain]  Cd Length: 50  Bit Score: 31.37  E-value: 8.78e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 1756871943  8 KCINCDMCEPECPNEAISMGD----NIYQIDTSRCTECVghyetpTCQKVCP 55
Cdd:pfam13187  1 KCTGCGACVAACPAGAIVPDLvgqtIRGDIAGLACIGCG------ACVDACP 46
NapH COG0348
Polyferredoxin NapH [Energy production and conversion];
8-55 9.35e-03

Polyferredoxin NapH [Energy production and conversion];


Pssm-ID: 440117 [Multi-domain]  Cd Length: 263  Bit Score: 33.11  E-value: 9.35e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1756871943   8 KCINCDMCEPECPneaisMGDNIY--QIDTSRCTECvGHyetptCQKVCP 55
Cdd:COG0348   211 DCIDCGLCVKVCP-----MGIDIRkgEINQSECINC-GR-----CIDACP 249
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 7-55 9.58e-03

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 32.75  E-value: 9.58e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1756871943   7 KKCINCDMCEPECPNEAISMGDNI-----YQIDTSRCTECvghyetPTCQKVCP 55
Cdd:cd10549     6 EKCIGCGICVKACPTDAIELGPNGaiargPEIDEDKCVFC------GACVEVCP 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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