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Conserved domains on  [gi|1756881974|gb|KAB1479375|]
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stress response protein ElaB [Cronobacter sakazakii]

Protein Classification

DUF883 domain-containing protein( domain architecture ID 10013509)

DUF883 domain-containing protein similar to Escherichia coli protein ElaB, a putative membrane-anchored ribosome-binding protein that inhibits growth in stationary phase

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10404 PRK10404
stress response protein ElaB;
3-88 2.82e-55

stress response protein ElaB;


:

Pssm-ID: 182432  Cd Length: 101  Bit Score: 166.56  E-value: 2.82e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756881974   3 LSSQPYETRVDDDLTLLSDTLEEILRSSGDPADQKYVELKARAEQALHDVKNRVSTASDNYYFRAKQAVYRADDYVHEKP 82
Cdd:PRK10404    1 MSNQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKP 80


                  ....*.
gi 1756881974  83 WQGVGI 88
Cdd:PRK10404   81 WQGIGV 86
 
Name Accession Description Interval E-value
PRK10404 PRK10404
stress response protein ElaB;
3-88 2.82e-55

stress response protein ElaB;


Pssm-ID: 182432  Cd Length: 101  Bit Score: 166.56  E-value: 2.82e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756881974   3 LSSQPYETRVDDDLTLLSDTLEEILRSSGDPADQKYVELKARAEQALHDVKNRVSTASDNYYFRAKQAVYRADDYVHEKP 82
Cdd:PRK10404    1 MSNQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKP 80


                  ....*.
gi 1756881974  83 WQGVGI 88
Cdd:PRK10404   81 WQGIGV 86
ElaB COG4575
Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD ...
 1-88 3.01e-25

Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family [Translation, ribosomal structure and biogenesis];


Pssm-ID: 443632 [Multi-domain]  Cd Length: 108  Bit Score: 90.77  E-value: 3.01e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756881974   1 MPLSSQPYETRVDDDLTLLSDTLEEILRSSGDPADQKYVELKARAEQALHDVKNRVSTASDNYYFRAKQAVYRADDYVHE 80
Cdd:COG4575     6 TTTSVEDSKEDLEADLKALVDDLEELLKSTADDAGEKAAELREKAEAALDEARERLSEAEDAAVERAREAADAADDYVHE 85


                  ....*...
gi 1756881974  81 KPWQGVGI 88
Cdd:COG4575    86 NPWQSVGI 93
DUF883 pfam05957
DUF883 N-terminal domain; This family consists of several hypothetical bacterial proteins of ...
 14-61 5.52e-05

DUF883 N-terminal domain; This family consists of several hypothetical bacterial proteins of unknown function. The N-terminal domain found in this entry is related to pfam05532.


Pssm-ID: 461786  Cd Length: 53  Bit Score: 37.49  E-value: 5.52e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1756881974  14 DDLTLLSDTLEEILRSSGDPADQKYVELKARAEQALHDVKNRVSTASD 61
Cdd:pfam05957   5 DDLKSLLADLEELLKDAADEAGEEADALRERLESRLKRARERLSDAQD 52
 
Name Accession Description Interval E-value
PRK10404 PRK10404
stress response protein ElaB;
3-88 2.82e-55

stress response protein ElaB;


Pssm-ID: 182432  Cd Length: 101  Bit Score: 166.56  E-value: 2.82e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756881974   3 LSSQPYETRVDDDLTLLSDTLEEILRSSGDPADQKYVELKARAEQALHDVKNRVSTASDNYYFRAKQAVYRADDYVHEKP 82
Cdd:PRK10404    1 MSNQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKP 80


                  ....*.
gi 1756881974  83 WQGVGI 88
Cdd:PRK10404   81 WQGIGV 86
ElaB COG4575
Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD ...
 1-88 3.01e-25

Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family [Translation, ribosomal structure and biogenesis];


Pssm-ID: 443632 [Multi-domain]  Cd Length: 108  Bit Score: 90.77  E-value: 3.01e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756881974   1 MPLSSQPYETRVDDDLTLLSDTLEEILRSSGDPADQKYVELKARAEQALHDVKNRVSTASDNYYFRAKQAVYRADDYVHE 80
Cdd:COG4575     6 TTTSVEDSKEDLEADLKALVDDLEELLKSTADDAGEKAAELREKAEAALDEARERLSEAEDAAVERAREAADAADDYVHE 85


                  ....*...
gi 1756881974  81 KPWQGVGI 88
Cdd:COG4575    86 NPWQSVGI 93
PRK10132 PRK10132
hypothetical protein; Provisional
 12-88 1.12e-06

hypothetical protein; Provisional


Pssm-ID: 182259  Cd Length: 108  Bit Score: 43.31  E-value: 1.12e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756881974  12 VDDDLTLLSDTLEEILRSSGDPADQKYVELKARAEQALHDVK------NRVSTAsdnyyfrAKQAVYRADDYVHEKPWQG 85
Cdd:PRK10132   17 IQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRarmhgrTRVQQA-------ARDAVGCADTFVRERPWCS 89


                  ...
gi 1756881974  86 VGI 88
Cdd:PRK10132   90 VGT 92
DUF883 pfam05957
DUF883 N-terminal domain; This family consists of several hypothetical bacterial proteins of ...
 14-61 5.52e-05

DUF883 N-terminal domain; This family consists of several hypothetical bacterial proteins of unknown function. The N-terminal domain found in this entry is related to pfam05532.


Pssm-ID: 461786  Cd Length: 53  Bit Score: 37.49  E-value: 5.52e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1756881974  14 DDLTLLSDTLEEILRSSGDPADQKYVELKARAEQALHDVKNRVSTASD 61
Cdd:pfam05957   5 DDLKSLLADLEELLKDAADEAGEEADALRERLESRLKRARERLSDAQD 52
DUF883_C pfam19029
DUF883 C-terminal glycine zipper region; This family corresponds to the C-terminal presumed ...
 74-88 9.24e-05

DUF883 C-terminal glycine zipper region; This family corresponds to the C-terminal presumed transmembrane helix found in DUF883 proteins. The helix contains a glycine zipper motif suggestive of dimerization.


Pssm-ID: 465949  Cd Length: 30  Bit Score: 36.37  E-value: 9.24e-05
                          10
                  ....*....|....*
gi 1756881974  74 ADDYVHEKPWQGVGI 88
Cdd:pfam19029   1 TDDYVHENPWQTIGI 15
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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