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Conserved domains on  [gi|1757862782|gb|KAB1877830|]
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sugar ABC transporter permease, partial [Klebsiella pneumoniae]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 10003067)

carbohydrate ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter responsible for the translocation across the membrane of one or more from a variety of carbohydrate substrates including trehalose, lactose, arabinose, and maltodextrin

Gene Ontology:  GO:0042626|GO:0140359|GO:0008643|GO:0055085
PubMed:  25750732|24638992|30626703
TCDB:  3.A.1.1.-

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
1-201 8.06e-62

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 194.20  E-value: 8.06e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757862782   1 LLAVALSENHRVNRWLRTAFFFPMIIPMVSAAALWLFIFMPGLGLLDhYLAKLFGPMNNNWLGRSNSALLALALIGVWKF 80
Cdd:COG1175    98 LLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLN-ALLGALGLEPINWLGDPSLALPAVIIVTVWKG 176

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757862782  81 AGYYMLFFLAGLQSIPASTREAALMEGATRTQVFFKVTLPLLRPTLSFVITTALIYSITQIDHVAVMTRGGPDNATTVLL 160
Cdd:COG1175   177 TGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGGPGNSTTTLV 256

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1757862782 161 YYIQNLAWDTHDLGKASAATFLTLAGLFAFSLINLKLLEKG 201
Cdd:COG1175   257 LYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRR 297
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
1-201 8.06e-62

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 194.20  E-value: 8.06e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757862782   1 LLAVALSENHRVNRWLRTAFFFPMIIPMVSAAALWLFIFMPGLGLLDhYLAKLFGPMNNNWLGRSNSALLALALIGVWKF 80
Cdd:COG1175    98 LLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLN-ALLGALGLEPINWLGDPSLALPAVIIVTVWKG 176

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757862782  81 AGYYMLFFLAGLQSIPASTREAALMEGATRTQVFFKVTLPLLRPTLSFVITTALIYSITQIDHVAVMTRGGPDNATTVLL 160
Cdd:COG1175   177 TGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGGPGNSTTTLV 256

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1757862782 161 YYIQNLAWDTHDLGKASAATFLTLAGLFAFSLINLKLLEKG 201
Cdd:COG1175   257 LYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRR 297
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
11-205 1.03e-24

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 97.59  E-value: 1.03e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757862782  11 RVNRWLRTAFFFPMIIPMVSAAALWLFIFMPGLGLLDHYLAKLfgPMNNNWLGRSNSALLALALIGVWKFAGYYMLFFLA 90
Cdd:PRK10561   87 RGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEF--GYDWNHAQNSGQAMFLVVFASVWKQISYNFLFFFA 164

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757862782  91 GLQSIPASTREAALMEGATRTQVFFKVTLPLLRPTLSFVITTALIYSITQIDHVA-VMTRGGPDNATTVLLYYIQNLAWD 169
Cdd:PRK10561  165 ALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAFFDTFPVIdAATSGGPVQATTTLIYKIYREGFT 244

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1757862782 170 THDLGKASAATFLTLAGLFAFSLINLKLLEKGAHYE 205
Cdd:PRK10561  245 GLDLSSSAAQSVVLMFLVIVLTVVQFRYVESKVRYQ 280
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 3-167 8.78e-09

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 53.05  E-value: 8.78e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757862782   3 AVALSENHRVNRWLRTAFFFPMIIPMVSAAALWLFIFmpglglldhylaklfgPMNNNWLGRSNSALLALALIGVWkFAG 82
Cdd:cd06261    24 IILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLF----------------GVLLGWGILPGLGLPALILALLL-IAP 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757862782  83 YYMLFFLAGLQSIPASTREAALMEGATRTQVFFKVTLPLLRPTLSFVITTALIYSITQIDHVAVMTRGGPDNATTVLLYY 162
Cdd:cd06261    87 FARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLI 166


                  ....*
gi 1757862782 163 IQNLA 167
Cdd:cd06261   167 FAILF 171
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 2-193 4.92e-08

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 50.76  E-value: 4.92e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757862782   2 LAVALSENHRVNRWLRTAFFFPMIIPMVsaaALWLFIFMPGlglldhylaklfgpmnnnWLGRSNSALLALALIGVWKFA 81
Cdd:pfam00528   6 IIAALRRGRRLDRLLRPLIDLLQALPSF---VLAILLVVIA------------------ILSILGHGILPAIILALLGWA 64

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757862782  82 GYYMLFFLAGLQSIPASTREAALMEGATRTQVFFKVTLPLLRPTLSFVITTALIYSITQIDHVAVMTRGGPDNATTVLLY 161
Cdd:pfam00528  65 GYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAI 144

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1757862782 162 YIQNLAWDThdlGKASAATFLTLAGLFAFSLI 193
Cdd:pfam00528 145 LGYDYPEIQ---GPVLAAALILLLLNLLVDIL 173
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
1-201 8.06e-62

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 194.20  E-value: 8.06e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757862782   1 LLAVALSENHRVNRWLRTAFFFPMIIPMVSAAALWLFIFMPGLGLLDhYLAKLFGPMNNNWLGRSNSALLALALIGVWKF 80
Cdd:COG1175    98 LLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLN-ALLGALGLEPINWLGDPSLALPAVIIVTVWKG 176

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757862782  81 AGYYMLFFLAGLQSIPASTREAALMEGATRTQVFFKVTLPLLRPTLSFVITTALIYSITQIDHVAVMTRGGPDNATTVLL 160
Cdd:COG1175   177 TGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGGPGNSTTTLV 256

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1757862782 161 YYIQNLAWDTHDLGKASAATFLTLAGLFAFSLINLKLLEKG 201
Cdd:COG1175   257 LYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRR 297
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
11-205 1.03e-24

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 97.59  E-value: 1.03e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757862782  11 RVNRWLRTAFFFPMIIPMVSAAALWLFIFMPGLGLLDHYLAKLfgPMNNNWLGRSNSALLALALIGVWKFAGYYMLFFLA 90
Cdd:PRK10561   87 RGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEF--GYDWNHAQNSGQAMFLVVFASVWKQISYNFLFFFA 164

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757862782  91 GLQSIPASTREAALMEGATRTQVFFKVTLPLLRPTLSFVITTALIYSITQIDHVA-VMTRGGPDNATTVLLYYIQNLAWD 169
Cdd:PRK10561  165 ALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAFFDTFPVIdAATSGGPVQATTTLIYKIYREGFT 244

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1757862782 170 THDLGKASAATFLTLAGLFAFSLINLKLLEKGAHYE 205
Cdd:PRK10561  245 GLDLSSSAAQSVVLMFLVIVLTVVQFRYVESKVRYQ 280
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 1-141 5.99e-13

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 65.88  E-value: 5.99e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757862782   1 LLAVALSE--NHRVNRWLRTAFFFPMIIPMVSAAALWLFIFMPGLGLLDHYLaKLFGPMNNNWLGRSNSALLALALIGVW 78
Cdd:COG4209   108 ILALLLNElrSKRFKKTVQTISYLPHFLSWVVVAGIVYQFLSPDTGLVNQLL-RALGGEPINFLTEPKYFRPIYVFSGIW 186

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1757862782  79 KFAGYYMLFFLAGLQSIPASTREAALMEGATRTQVFFKVTLPLLRPTlsfvITTALIYSITQI 141
Cdd:COG4209   187 KEAGWGSIIYLAAITGIDPELYEAAAIDGAGRWQQIWHITLPGIRPT----IVILLILNIGNI 245
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
14-139 4.28e-11

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 61.33  E-value: 4.28e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757862782  14 RWLRTAFFFPMIIPMVSAAALWLFIFMPGlGLLDHYLAKLFGPMNNNWLGrsnsaLLALALIGVWKFAGYYMLFFLAGLQ 93
Cdd:COG1178    90 RLLRWLLLLPLALPPYVVALAWIALFGPN-GLLNTLLRALFGLEPPDIYG-----LGGIILVLVLFNYPYVYLLLRAALR 163

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1757862782  94 SIPASTREAALMEGATRTQVFFKVTLPLLRPTLSFVITTALIYSIT 139
Cdd:COG1178   164 SIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLA 209
malF PRK10999
maltose ABC transporter permease MalF;
50-197 4.57e-09

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 55.35  E-value: 4.57e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757862782  50 LAKLFGpMNNNWLGRSNSALLALALIGVWkfAGY-YMLFFLAG-LQSIPASTREAALMEGATRTQVFFKVTLPLLRPTLS 127
Cdd:PRK10999  357 LSALFG-IKPAWFSDPTLAKTMILIVNTW--LGYpYMMILCMGlLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLT 433

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757862782 128 FVITTALIYSITQIDHVAVMTRGGPD--NATTV------LLYYIQNLAWD---THDLGKASA-AT--FLTLAGLfafSLI 193
Cdd:PRK10999  434 PLMIASFAFNFNNFVLIQLLTNGGPDmiGTTTPagytdlLVSYTYRIAFEgggGQDFGLAAAiATliFLLVGAL---AIL 510


                  ....
gi 1757862782 194 NLKL 197
Cdd:PRK10999  511 NLKA 514
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 3-167 8.78e-09

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 53.05  E-value: 8.78e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757862782   3 AVALSENHRVNRWLRTAFFFPMIIPMVSAAALWLFIFmpglglldhylaklfgPMNNNWLGRSNSALLALALIGVWkFAG 82
Cdd:cd06261    24 IILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLF----------------GVLLGWGILPGLGLPALILALLL-IAP 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757862782  83 YYMLFFLAGLQSIPASTREAALMEGATRTQVFFKVTLPLLRPTLSFVITTALIYSITQIDHVAVMTRGGPDNATTVLLYY 162
Cdd:cd06261    87 FARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLI 166


                  ....*
gi 1757862782 163 IQNLA 167
Cdd:cd06261   167 FAILF 171
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 2-193 4.92e-08

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 50.76  E-value: 4.92e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757862782   2 LAVALSENHRVNRWLRTAFFFPMIIPMVsaaALWLFIFMPGlglldhylaklfgpmnnnWLGRSNSALLALALIGVWKFA 81
Cdd:pfam00528   6 IIAALRRGRRLDRLLRPLIDLLQALPSF---VLAILLVVIA------------------ILSILGHGILPAIILALLGWA 64

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757862782  82 GYYMLFFLAGLQSIPASTREAALMEGATRTQVFFKVTLPLLRPTLSFVITTALIYSITQIDHVAVMTRGGPDNATTVLLY 161
Cdd:pfam00528  65 GYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAI 144

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1757862782 162 YIQNLAWDThdlGKASAATFLTLAGLFAFSLI 193
Cdd:pfam00528 145 LGYDYPEIQ---GPVLAAALILLLLNLLVDIL 173
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 11-140 3.37e-07

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 49.32  E-value: 3.37e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757862782  11 RVNRWLRTAFFFPMIIPMVsAAALWLFIFMPGLGLLDHYLAklfgpmnnnwlgrsnsallaLALIGVWKFAGYYMLFFLA 90
Cdd:COG0395   107 RGRKLLFLLILATLMIPGQ-VLLIPLYLLFRQLGLLNTYWG--------------------LILPYLAFGLPFGIFLLRQ 165

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1757862782  91 GLQSIPASTREAALMEGATRTQVFFKVTLPLLRPTLsfvITTALIYSITQ 140
Cdd:COG0395   166 FFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPAL---ATVAIFTFIGA 212
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 1-126 1.31e-06

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 47.41  E-value: 1.31e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757862782   1 LLAVALS-ENHRVNRWLRTAFFFPMIIP-MVSAAALwlFIFMPGLGLLDHYLaklfgpmnnnwlgrsnSALLALALIGVw 78
Cdd:COG1177    83 PAALALArYRFRGRRLLLALLLLPLVVPgIVLGVAL--LLLFSALGLSGGLW----------------GLILAHVVFTL- 143

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1757862782  79 kfaGYYMLFFLAGLQSIPASTREAALMEGATRTQVFFKVTLPLLRPTL 126
Cdd:COG1177   144 ---PFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGI 188
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 94-135 2.04e-06

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 47.07  E-value: 2.04e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1757862782  94 SIPASTREAALMEGATRTQVFFKVTLPLLRPTLSFVITTALI 135
Cdd:COG3833   168 TIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFI 209
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 11-206 7.94e-06

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 45.14  E-value: 7.94e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757862782  11 RVNRWLRTAFFFPMIIPMVSAAALWLFIFMPGlGLLDHYLAKL------FGPMNNNWlgrsnSALLALaligVWKFAGYY 84
Cdd:COG1176   100 RWRNLLLLLVILPFWTSFLVRTYAWIVLLGRN-GLLNSLLLALglidepLRLLYTEF-----AVVIGL----VYVYLPFM 169

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757862782  85 MLFFLAGLQSIPASTREAALMEGATRTQVFFKVTLPLLRP------------TLSFVITTALIysitqidhvavmtrGGP 152
Cdd:COG1176   170 VLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPgiiagsllvfipALGAFVTPALL--------------GGG 235

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1757862782 153 DnaTTVLLYYIQNLAWDTHDLGKASAATFLTLAGLFAFSLINLKLLEKGAHYER 206
Cdd:COG1176   236 K--VLMIGNLIYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLLGG 287
malG PRK10998
maltose ABC transporter permease MalG;
22-141 9.45e-05

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 42.00  E-value: 9.45e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757862782  22 FPMIIPMVSAAALWLFI--FMPGLGLLDHyLAKLFgpmnnnwlgrsnsALLALALIGVWKFAGYYmlfflaglQSIPAST 99
Cdd:PRK10998  131 FPAVLSLVALYALFDRLgqYIPFIGLNTH-GGVIF-------------AYLGGIALHVWTIKGYF--------ETIDSSL 188

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1757862782 100 REAALMEGATRTQVFFKVTLPLLRPTLSFVITTALIYSITQI 141
Cdd:PRK10998  189 EEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEV 230
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
90-195 1.20e-04

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 42.07  E-value: 1.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757862782  90 AGLQSIPASTREAALMEGATRTQVFFKVTLPLLRPTLSFVITTALIYSITQIDHVAVMTRGGpdnaTTVLLYYIQNLaWD 169
Cdd:COG1178   432 AALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPG----FETLAVLIYQL-AS 506

                          90       100
                  ....*....|....*....|....*..
gi 1757862782 170 THDLGKASA-ATFLTLAGLFAFSLINL 195
Cdd:COG1178   507 SGRYGEAAAlALLLVLVSLLPVLLLER 533
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 50-126 2.23e-04

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 40.89  E-value: 2.23e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757862782  50 LAKLFGPmnNNWLGRSNSAL------------LALALIGvwkfAGYYMLFFLAGLQSIPASTREAALMEGATRTQVFFKV 117
Cdd:COG0555   111 LLLLFGP--NGWLGQLLAPLgikvaftplgivLAQTFVS----LPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRV 184


                  ....*....
gi 1757862782 118 TLPLLRPTL 126
Cdd:COG0555   185 ILPLLLPAL 193
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 1-139 1.39e-03

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 38.13  E-value: 1.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1757862782   1 LLAVALSENHRVNRWLRTAF--FF---PMIIpmvsaaalWLFIFMPGLGLLDHYLAKLFgpmnnnwlgrsnSALLALALI 75
Cdd:COG0765    39 LLALARLSPNPVLRWLATAYveFFrgtPLLV--------QLFFIYFGLPLLGIDLSPFV------------AAVIALTLN 98

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1757862782  76 GvwkfAGYYMLFFLAGLQSIPASTREAALMEGATRTQVFFKVTLP-----LLRPTLSFVIT----TALIYSIT 139
Cdd:COG0765    99 S----AAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPqalriILPPLGNEFISllkdTSLVSVIG 167
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 89-138 4.94e-03

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 36.57  E-value: 4.94e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1757862782  89 LAGLQSIPASTREAALMEGATRTQVFFKVTLPLLRPTLSFVITTALIYSI 138
Cdd:COG1174   102 YTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTAAVQNI 151
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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