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Conserved domains on  [gi|1758723590|gb|KAB2504798|]
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methyl-accepting chemotaxis protein [Bacillus cereus]

Protein Classification

methyl-accepting chemotaxis protein( domain architecture ID 11435591)

methyl-accepting chemotaxis protein (MCP) is a bacterial receptor that mediates chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behavior

CATH:  1.10.287.950
Gene Ontology:  GO:0006935
PubMed:  18165013|20738376
SCOP:  4003862

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Tar COG0840
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];
53-428 1.50e-66

Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];


:

Pssm-ID: 440602 [Multi-domain]  Cd Length: 533  Bit Score: 221.43  E-value: 1.50e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590  53 IIVMLLGVVWSGILAYGAAVFLIKPLRKLEEAARKAAEGDIREDVPLpKTDDEIKSLSVAFNMMLGNLRGMVknidttfs 132
Cdd:COG0840   185 AAALLALVALAIILALLLSRSITRPLRELLEVLERIAEGDLTVRIDV-DSKDEIGQLADAFNRMIENLRELV-------- 255

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 133 ytnnqvQQIRKQTGEATRQAQGVSETLAEISSGAEQSAASIQAIVSAVDTTTSIASEVEEKAKQSDTLSSEMVQALGHST 212
Cdd:COG0840   256 ------GQVRESAEQVASASEELAASAEELAAGAEEQAASLEETAAAMEELSATVQEVAENAQQAAELAEEASELAEEGG 329

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 213 RVFTSLIQGIQTLAKENEDSMQNVQKLEERMKQVEHIVSVVSAIASQTNLLALNASIEAARAGEHGRGFAVVAEEVRKLA 292
Cdd:COG0840   330 EVVEEAVEGIEEIRESVEETAETIEELGESSQEIGEIVDVIDDIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLA 409

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 293 DESDHSARNISQLLRNMQDEVQQVAMKMTEQVKIAKEEAKRGEATELILKEMSSSVMEVADATQQISSYMNEQVSHIHQT 372
Cdd:COG0840   410 ERSAEATKEIEELIEEIQSETEEAVEAMEEGSEEVEEGVELVEEAGEALEEIVEAVEEVSDLIQEIAAASEEQSAGTEEV 489

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1758723590 373 GAQTKAVAAIAEETSAGSQEVARVTlqqsknmividqllKDLEKQATDLKQTIERF 428
Cdd:COG0840   490 NQAIEQIAAAAQENAASVEEVAAAA--------------EELAELAEELQELVSRF 531
 
Name Accession Description Interval E-value
Tar COG0840
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];
53-428 1.50e-66

Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];


Pssm-ID: 440602 [Multi-domain]  Cd Length: 533  Bit Score: 221.43  E-value: 1.50e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590  53 IIVMLLGVVWSGILAYGAAVFLIKPLRKLEEAARKAAEGDIREDVPLpKTDDEIKSLSVAFNMMLGNLRGMVknidttfs 132
Cdd:COG0840   185 AAALLALVALAIILALLLSRSITRPLRELLEVLERIAEGDLTVRIDV-DSKDEIGQLADAFNRMIENLRELV-------- 255

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 133 ytnnqvQQIRKQTGEATRQAQGVSETLAEISSGAEQSAASIQAIVSAVDTTTSIASEVEEKAKQSDTLSSEMVQALGHST 212
Cdd:COG0840   256 ------GQVRESAEQVASASEELAASAEELAAGAEEQAASLEETAAAMEELSATVQEVAENAQQAAELAEEASELAEEGG 329

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 213 RVFTSLIQGIQTLAKENEDSMQNVQKLEERMKQVEHIVSVVSAIASQTNLLALNASIEAARAGEHGRGFAVVAEEVRKLA 292
Cdd:COG0840   330 EVVEEAVEGIEEIRESVEETAETIEELGESSQEIGEIVDVIDDIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLA 409

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 293 DESDHSARNISQLLRNMQDEVQQVAMKMTEQVKIAKEEAKRGEATELILKEMSSSVMEVADATQQISSYMNEQVSHIHQT 372
Cdd:COG0840   410 ERSAEATKEIEELIEEIQSETEEAVEAMEEGSEEVEEGVELVEEAGEALEEIVEAVEEVSDLIQEIAAASEEQSAGTEEV 489

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1758723590 373 GAQTKAVAAIAEETSAGSQEVARVTlqqsknmividqllKDLEKQATDLKQTIERF 428
Cdd:COG0840   490 NQAIEQIAAAAQENAASVEEVAAAA--------------EELAELAEELQELVSRF 531
MA smart00283
Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo ...
 149-429 2.45e-49

Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.


Pssm-ID: 214599 [Multi-domain]  Cd Length: 262  Bit Score: 168.23  E-value: 2.45e-49
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590  149 TRQAQGVSETLAEISSGAEQSAASIQAIVSAVDTTTSIASEVEEKAKQSDTLSSEMVQALGhstrvftSLIQGIQTLAKE 228
Cdd:smart00283   3 SEAVEEIAAGAEEQAEELEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGREAVE-------DAITAMDQIREV 75

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590  229 NEDSMQNVQKLEERMKQVEHIVSVVSAIASQTNLLALNASIEAARAGEHGRGFAVVAEEVRKLADESDHSARNISQLLRN 308
Cdd:smart00283  76 VEEAVSAVEELEESSDEIGEIVSVIDDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERSAESAKEIESLIKE 155

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590  309 MQDEVQQVAMKMTEQVKIAKEEAKRGEATELILKEMSSSVMEVADATQQISSYMNEQVSHIHQTGAQTKAVAAIAEETSA 388
Cdd:smart00283 156 IQEETNEAVAAMEESSSEVEEGVELVEETGDALEEIVDSVEEIADLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQETAA 235

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|.
gi 1758723590  389 GSQEVARVTlqqsknmividqllKDLEKQATDLKQTIERFS 429
Cdd:smart00283 236 MSEEISAAA--------------EELSGLAEELDELVERFK 262
MCP_signal cd11386
Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis ...
 167-394 6.49e-40

Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.


Pssm-ID: 206779 [Multi-domain]  Cd Length: 200  Bit Score: 141.61  E-value: 6.49e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 167 EQSAASIQAIVSAVDTTTSIASEVEEKAKQSDTLSSEMVQAlghstrvftsliqgIQTLAKENEDSMQNVQKLEERMKQV 246
Cdd:cd11386     1 EELSASIEEVAASADQVAETSQQAAELAEKGREAAEDAINQ--------------MNQIDESVDEAVSAVEELEESSAEI 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 247 EHIVSVVSAIASQTNLLALNASIEAARAGEHGRGFAVVAEEVRKLADESDHSARNISQLLRNMQDEVQQVAMKMTEQVKI 326
Cdd:cd11386    67 GEIVEVIDDIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAEESAEAAKEIEELIEEIQEQTEEAVEAMEETSEE 146

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1758723590 327 AKEEAKRGEATELILKEMSSSVMEVADATQQISSYMNEQvshihqtgaqtkavAAIAEETSAGSQEVA 394
Cdd:cd11386   147 VEEGVELVEETGRAFEEIVASVEEVADGIQEISAATQEQ--------------SASTQEIAAAVEEIA 200
MCPsignal pfam00015
Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to ...
 227-382 3.65e-30

Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.


Pssm-ID: 333767 [Multi-domain]  Cd Length: 172  Bit Score: 114.84  E-value: 3.65e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 227 KENEDSMQNVQKLEERMKQVEHIVSVVSAIASQTNLLALNASIEAARAGEHGRGFAVVAEEVRKLADESDHSARNISQLL 306
Cdd:pfam00015  16 KEVANVVGQMEQIAQSSKKISDIISVIDEIAFQTNLLALNAAIEAARAGEQGRGFAVVADEVRKLAERSAQAAKEIEALI 95

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1758723590 307 RNMQDEVQQVAMKMTEQVKIAKEEAKRGEATELILKEMSSSVMEVADATQQISSYMNEQVSHIHQTGAQTKAVAAI 382
Cdd:pfam00015  96 IEIQKQTNDSTASIESTRQRVEVGSTIVESTGEALKEIVDAVAEIADIVQEIAAASDEQSAGIDQVNQAVARMDQV 171
PRK15041 PRK15041
methyl-accepting chemotaxis protein;
53-428 2.15e-25

methyl-accepting chemotaxis protein;


Pssm-ID: 185001 [Multi-domain]  Cd Length: 554  Bit Score: 108.50  E-value: 2.15e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590  53 IIVMLLGVVWSGILA--YGAAVFLIKPLRKLEEAARKAAEGDIredvplpktddeIKSLSVAFNMMLGNLRGMVKNIDTT 130
Cdd:PRK15041  195 ILVGVMIVVLAVIFAvwFGIKASLVAPMNRLIDSIRHIAGGDL------------VKPIEVDGSNEMGQLAESLRHMQGE 262

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 131 FSYTnnqVQQIRKQTGEATRQAQGVSETLAEISSGAEQSAASIQAIVSAVDTTTSIASEVEEKAKQSDTLSSEMVQALGH 210
Cdd:PRK15041  263 LMRT---VGDVRNGANAIYSGASEIATGNNDLSSRTEQQAASLEETAASMEQLTATVKQNAENARQASHLALSASETAQR 339

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 211 STRVFTSLIQGIQTLAKENEdsmqnvqkleermkQVEHIVSVVSAIASQTNLLALNASIEAARAGEHGRGFAVVAEEVRK 290
Cdd:PRK15041  340 GGKVVDNVVQTMRDISTSSQ--------------KIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRN 405

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 291 LADESDHSARNISQLLrnmQDEVQQVAMKMTeQVKIAKEeakrgeatelILKEMSSSVMEVADATQQISSYMNEQVSHIH 370
Cdd:PRK15041  406 LAQRSAQAAREIKSLI---EDSVGKVDVGST-LVESAGE----------TMAEIVSAVTRVTDIMGEIASASDEQSRGID 471

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1758723590 371 QTGAqtkAVAaiaeetsagsqEVARVTLQQSKNMIVIDQLLKDLEKQATDLKQTIERF 428
Cdd:PRK15041  472 QVGL---AVA-----------EMDRVTQQNAALVEESAAAAAALEEQASRLTEAVAVF 515
cztS_silS_copS TIGR01386
heavy metal sensor kinase; Members of this family contain a sensor histidine kinase domain ...
 35-120 1.34e-04

heavy metal sensor kinase; Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.


Pssm-ID: 273593 [Multi-domain]  Cd Length: 457  Bit Score: 43.92  E-value: 1.34e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590  35 IYVIYD--YFQSYVSQTVYNIIV-MLLGVVWSGILAYGAAVFLIKPLRKLEEAARKAAEGDIREDVPLPKTDDEIKSLSV 111
Cdd:TIGR01386 146 ITVALDinAHTHLLDALRKWLILiAVLLVLLTALLGWWITRLGLEPLRRLSAVAARISPESLDQRLDPSRAPAELRELAQ 225


                  ....*....
gi 1758723590 112 AFNMMLGNL 120
Cdd:TIGR01386 226 SFNAMLGRL 234
 
Name Accession Description Interval E-value
Tar COG0840
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];
53-428 1.50e-66

Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];


Pssm-ID: 440602 [Multi-domain]  Cd Length: 533  Bit Score: 221.43  E-value: 1.50e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590  53 IIVMLLGVVWSGILAYGAAVFLIKPLRKLEEAARKAAEGDIREDVPLpKTDDEIKSLSVAFNMMLGNLRGMVknidttfs 132
Cdd:COG0840   185 AAALLALVALAIILALLLSRSITRPLRELLEVLERIAEGDLTVRIDV-DSKDEIGQLADAFNRMIENLRELV-------- 255

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 133 ytnnqvQQIRKQTGEATRQAQGVSETLAEISSGAEQSAASIQAIVSAVDTTTSIASEVEEKAKQSDTLSSEMVQALGHST 212
Cdd:COG0840   256 ------GQVRESAEQVASASEELAASAEELAAGAEEQAASLEETAAAMEELSATVQEVAENAQQAAELAEEASELAEEGG 329

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 213 RVFTSLIQGIQTLAKENEDSMQNVQKLEERMKQVEHIVSVVSAIASQTNLLALNASIEAARAGEHGRGFAVVAEEVRKLA 292
Cdd:COG0840   330 EVVEEAVEGIEEIRESVEETAETIEELGESSQEIGEIVDVIDDIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLA 409

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 293 DESDHSARNISQLLRNMQDEVQQVAMKMTEQVKIAKEEAKRGEATELILKEMSSSVMEVADATQQISSYMNEQVSHIHQT 372
Cdd:COG0840   410 ERSAEATKEIEELIEEIQSETEEAVEAMEEGSEEVEEGVELVEEAGEALEEIVEAVEEVSDLIQEIAAASEEQSAGTEEV 489

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1758723590 373 GAQTKAVAAIAEETSAGSQEVARVTlqqsknmividqllKDLEKQATDLKQTIERF 428
Cdd:COG0840   490 NQAIEQIAAAAQENAASVEEVAAAA--------------EELAELAEELQELVSRF 531
MA smart00283
Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo ...
 149-429 2.45e-49

Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.


Pssm-ID: 214599 [Multi-domain]  Cd Length: 262  Bit Score: 168.23  E-value: 2.45e-49
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590  149 TRQAQGVSETLAEISSGAEQSAASIQAIVSAVDTTTSIASEVEEKAKQSDTLSSEMVQALGhstrvftSLIQGIQTLAKE 228
Cdd:smart00283   3 SEAVEEIAAGAEEQAEELEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGREAVE-------DAITAMDQIREV 75

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590  229 NEDSMQNVQKLEERMKQVEHIVSVVSAIASQTNLLALNASIEAARAGEHGRGFAVVAEEVRKLADESDHSARNISQLLRN 308
Cdd:smart00283  76 VEEAVSAVEELEESSDEIGEIVSVIDDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERSAESAKEIESLIKE 155

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590  309 MQDEVQQVAMKMTEQVKIAKEEAKRGEATELILKEMSSSVMEVADATQQISSYMNEQVSHIHQTGAQTKAVAAIAEETSA 388
Cdd:smart00283 156 IQEETNEAVAAMEESSSEVEEGVELVEETGDALEEIVDSVEEIADLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQETAA 235

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|.
gi 1758723590  389 GSQEVARVTlqqsknmividqllKDLEKQATDLKQTIERFS 429
Cdd:smart00283 236 MSEEISAAA--------------EELSGLAEELDELVERFK 262
MCP_signal cd11386
Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis ...
 167-394 6.49e-40

Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.


Pssm-ID: 206779 [Multi-domain]  Cd Length: 200  Bit Score: 141.61  E-value: 6.49e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 167 EQSAASIQAIVSAVDTTTSIASEVEEKAKQSDTLSSEMVQAlghstrvftsliqgIQTLAKENEDSMQNVQKLEERMKQV 246
Cdd:cd11386     1 EELSASIEEVAASADQVAETSQQAAELAEKGREAAEDAINQ--------------MNQIDESVDEAVSAVEELEESSAEI 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 247 EHIVSVVSAIASQTNLLALNASIEAARAGEHGRGFAVVAEEVRKLADESDHSARNISQLLRNMQDEVQQVAMKMTEQVKI 326
Cdd:cd11386    67 GEIVEVIDDIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAEESAEAAKEIEELIEEIQEQTEEAVEAMEETSEE 146

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1758723590 327 AKEEAKRGEATELILKEMSSSVMEVADATQQISSYMNEQvshihqtgaqtkavAAIAEETSAGSQEVA 394
Cdd:cd11386   147 VEEGVELVEETGRAFEEIVASVEEVADGIQEISAATQEQ--------------SASTQEIAAAVEEIA 200
MCPsignal pfam00015
Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to ...
 227-382 3.65e-30

Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.


Pssm-ID: 333767 [Multi-domain]  Cd Length: 172  Bit Score: 114.84  E-value: 3.65e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 227 KENEDSMQNVQKLEERMKQVEHIVSVVSAIASQTNLLALNASIEAARAGEHGRGFAVVAEEVRKLADESDHSARNISQLL 306
Cdd:pfam00015  16 KEVANVVGQMEQIAQSSKKISDIISVIDEIAFQTNLLALNAAIEAARAGEQGRGFAVVADEVRKLAERSAQAAKEIEALI 95

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1758723590 307 RNMQDEVQQVAMKMTEQVKIAKEEAKRGEATELILKEMSSSVMEVADATQQISSYMNEQVSHIHQTGAQTKAVAAI 382
Cdd:pfam00015  96 IEIQKQTNDSTASIESTRQRVEVGSTIVESTGEALKEIVDAVAEIADIVQEIAAASDEQSAGIDQVNQAVARMDQV 171
PRK15041 PRK15041
methyl-accepting chemotaxis protein;
53-428 2.15e-25

methyl-accepting chemotaxis protein;


Pssm-ID: 185001 [Multi-domain]  Cd Length: 554  Bit Score: 108.50  E-value: 2.15e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590  53 IIVMLLGVVWSGILA--YGAAVFLIKPLRKLEEAARKAAEGDIredvplpktddeIKSLSVAFNMMLGNLRGMVKNIDTT 130
Cdd:PRK15041  195 ILVGVMIVVLAVIFAvwFGIKASLVAPMNRLIDSIRHIAGGDL------------VKPIEVDGSNEMGQLAESLRHMQGE 262

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 131 FSYTnnqVQQIRKQTGEATRQAQGVSETLAEISSGAEQSAASIQAIVSAVDTTTSIASEVEEKAKQSDTLSSEMVQALGH 210
Cdd:PRK15041  263 LMRT---VGDVRNGANAIYSGASEIATGNNDLSSRTEQQAASLEETAASMEQLTATVKQNAENARQASHLALSASETAQR 339

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 211 STRVFTSLIQGIQTLAKENEdsmqnvqkleermkQVEHIVSVVSAIASQTNLLALNASIEAARAGEHGRGFAVVAEEVRK 290
Cdd:PRK15041  340 GGKVVDNVVQTMRDISTSSQ--------------KIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRN 405

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 291 LADESDHSARNISQLLrnmQDEVQQVAMKMTeQVKIAKEeakrgeatelILKEMSSSVMEVADATQQISSYMNEQVSHIH 370
Cdd:PRK15041  406 LAQRSAQAAREIKSLI---EDSVGKVDVGST-LVESAGE----------TMAEIVSAVTRVTDIMGEIASASDEQSRGID 471

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1758723590 371 QTGAqtkAVAaiaeetsagsqEVARVTLQQSKNMIVIDQLLKDLEKQATDLKQTIERF 428
Cdd:PRK15041  472 QVGL---AVA-----------EMDRVTQQNAALVEESAAAAAALEEQASRLTEAVAVF 515
PRK15048 PRK15048
methyl-accepting chemotaxis protein II; Provisional
 53-430 1.51e-23

methyl-accepting chemotaxis protein II; Provisional


Pssm-ID: 185008 [Multi-domain]  Cd Length: 553  Bit Score: 103.16  E-value: 1.51e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590  53 IIVMLLGVVWsgilaYGAAVFLIKPLRKLEEAARKAAEGDIredvplpktddeIKSLSVAFNMMLGNLRGMVKNIDTTFS 132
Cdd:PRK15048  200 VVVLILLVAW-----YGIRRMLLTPLAKIIAHIREIAGGNL------------ANTLTIDGRSEMGDLAQSVSHMQRSLT 262

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 133 YTnnqVQQIRKQTGEATRQAQGVSETLAEISSGAEQSAASIQAIVSAVDTTTSIASEVEEKAKQSDTLSSEMVQALGHST 212
Cdd:PRK15048  263 DT---VTHVREGSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQASQLAQSASDTAQHGG 339

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 213 RVFTSLIQGIQTLAKENedsmqnvqkleermKQVEHIVSVVSAIASQTNLLALNASIEAARAGEHGRGFAVVAEEVRKLA 292
Cdd:PRK15048  340 KVVDGVVKTMHEIADSS--------------KKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLA 405

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 293 DESDHSARNISQLLrnmQDEVQQVAmkmTEQVKIakeeakrgEATELILKEMSSSVMEVADATQQISSYMNEQVSHIHQT 372
Cdd:PRK15048  406 SRSAQAAKEIKALI---EDSVSRVD---TGSVLV--------ESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQV 471

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1758723590 373 GAQTKAVAAIAEETSAGSQEVARVTLQqsknmividqllkdLEKQATDLKQTIERFSM 430
Cdd:PRK15048  472 ALAVSEMDRVTQQNASLVQESAAAAAA--------------LEEQASRLTQAVSAFRL 515
PRK09793 PRK09793
methyl-accepting chemotaxis protein IV;
44-394 2.42e-22

methyl-accepting chemotaxis protein IV;


Pssm-ID: 182079 [Multi-domain]  Cd Length: 533  Bit Score: 99.38  E-value: 2.42e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590  44 SYVSQTVYNIIVMLLGVVWSGILAYGAAVFLIKPLRKLEEAARKAAEGDIREDVPLpKTDDEIKSLSVAFNMMLGNLRGM 123
Cdd:PRK09793  184 NYQISALVFISMIIVAAIYISSALWWTRKMIVQPLAIIGSHFDSIAAGNLARPIAV-YGRNEITAIFASLKTMQQALRGT 262

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 124 VKNIdttfsytnnqvqqirKQTGEATRQaqGVSETLA---EISSGAEQSAASIQAIVSAVDTTTSIASEVEEKAKQSDTL 200
Cdd:PRK09793  263 VSDV---------------RKGSQEMHI--GIAEIVAgnnDLSSRTEQQAASLAQTAASMEQLTATVGQNADNARQASEL 325

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 201 S---SEMVQALGHSTRVFTSLIQGIQTLAKENEDsmqnvqkleermkqvehIVSVVSAIASQTNLLALNASIEAARAGEH 277
Cdd:PRK09793  326 AknaATTAQAGGVQVSTMTHTMQEIATSSQKIGD-----------------IISVIDGIAFQTNILALNAAVEAARAGEQ 388

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 278 GRGFAVVAEEVRKLADESDHSARNISQLLRNMQDEVQQVAmkmteqvKIAKEEAKrgeatelILKEMSSSVMEVADATQQ 357
Cdd:PRK09793  389 GRGFAVVAGEVRNLASRSAQAAKEIKGLIEESVNRVQQGS-------KLVNNAAA-------TMTDIVSSVTRVNDIMGE 454

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1758723590 358 ISSYMNEQVSHIHQTGAQ-------TKAVAAIAEETSAGSQEVA 394
Cdd:PRK09793  455 IASASEEQRRGIEQVAQAvsqmdqvTQQNASLVEEAAVATEQLA 498
HAMP cd06225
Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain; ...
 75-120 1.50e-08

Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain; HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The structure of the Af1503 HAMP dimer from Archaeoglobus fulgidus has been solved using nuclear magnetic resonance, revealing a parallel four-helix bundle; this structure has been confirmed by cross-linking analysis of HAMP domains from the Escherichia coli aerotaxis receptor Aer. It has been suggested that the four-helix arrangement can rotate between the unusually packed conformation observed in the NMR structure and a canonical coiled-coil arrangement. Such rotation may coincide with signal transduction, but a common mechanism by which HAMP domains relay a variety of input signals has yet to be established.


Pssm-ID: 381743 [Multi-domain]  Cd Length: 45  Bit Score: 50.52  E-value: 1.50e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1758723590  75 IKPLRKLEEAARKAAEGDIREDVPlPKTDDEIKSLSVAFNMMLGNL 120
Cdd:cd06225     1 TRPLRRLTEAARRIAEGDLDVRVP-VRSKDEIGELARAFNQMAERL 45
HAMP pfam00672
HAMP domain;
74-121 2.56e-08

HAMP domain;


Pssm-ID: 459898 [Multi-domain]  Cd Length: 53  Bit Score: 49.93  E-value: 2.56e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1758723590  74 LIKPLRKLEEAARKAAEGDIREDVPlPKTDDEIKSLSVAFNMMLGNLR 121
Cdd:pfam00672   6 ILRPLRRLAEAARRIASGDLDVRLP-VSGRDEIGELARAFNQMAERLR 52
NtrY COG5000
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ...
 53-141 3.99e-08

Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];


Pssm-ID: 444024 [Multi-domain]  Cd Length: 422  Bit Score: 54.97  E-value: 3.99e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590  53 IIVMLLGVVWSGILAYGAAVFLIKPLRKLEEAARKAAEGDIREDVPLpKTDDEIKSLSVAFNMMLGNLRGMVKNIDTTFS 132
Cdd:COG5000    12 LLIALLLLLLALWLALLLARRLTRPLRRLAEATRAVAAGDLSVRLPV-TGDDEIGELARAFNRMTDQLKEQREELEERRR 90


                  ....*....
gi 1758723590 133 YTNNQVQQI 141
Cdd:COG5000    91 YLETILENL 99
HAMP smart00304
HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain;
74-124 6.84e-08

HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain;


Pssm-ID: 197640 [Multi-domain]  Cd Length: 53  Bit Score: 48.78  E-value: 6.84e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1758723590   74 LIKPLRKLEEAARKAAEGDIREDVPlPKTDDEIKSLSVAFNMMLGNLRGMV 124
Cdd:smart00304   3 LLRPLRRLAEAAQRIADGDLTVRLP-VDGRDEIGELARAFNEMADRLEETI 52
HAMP COG2770
HAMP domain [Signal transduction mechanisms];
11-426 3.89e-05

HAMP domain [Signal transduction mechanisms];


Pssm-ID: 442051 [Multi-domain]  Cd Length: 631  Bit Score: 45.87  E-value: 3.89e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590  11 GLRTQLMLFTTVLAFITYSTSIFFIYVIYDYFQSYVSQTVYNIIVMLLGVVWSGILAYGAAVFLIKPLRKLEEAARKAAE 90
Cdd:COG2770   173 LLLLADLAAAIAALLAALLLLLLGGLLLVVLLEAALAALLLLLLLALLALLLALLLALLLARRITRPLRRLAEAARRIAA 252

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590  91 GDIREDVPLpKTDDEIKSLSVAFNMMLGNLRGMVKNIDTTFSYTNNQVQQIRKQTGEATRQAQGVSETLAEISSGAEQSA 170
Cdd:COG2770   253 GDLDVRIPV-SRKDEIGELARAFNRMADSLRESIEEAEEEEELAEAELARLLEALLELLLALLLLLLALLLLAAAALLLE 331

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 171 ASIQAIVSAVDTTTSIASEVEEKAKQSDTLSSEMVQALGHSTRVFTSLIQGIQTLAKENEDSMQNVQKLEERMKQVEHIV 250
Cdd:COG2770   332 LLLLLLLALLLLLLLAADLLLALALAALLLLLALELLLEAELLVLLALEALALEAELAAVLALLAALAAALLLLELALEE 411

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 251 SVVSAIASQTNLLALNASIEAARAGEHGRGFAVVAEEVRKLADESDHSARNISQLLRNMQDEVQQVAMKMTEQVKIAKEE 330
Cdd:COG2770   412 LVLALLALALLALAAAAAAAEAAAAALELAAAAIAAAAAAEAEGGLAELEAEELVAAAEALLLLAALLLLAALGALELLL 491

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 331 AKRGEATELILKEMSSSVMEVADATQQISSYMNEQVSHIHQTGAQTKAVAAIAEETSAGSQEVARVTLQQSKNMIVIDQL 410
Cdd:COG2770   492 LEEEEEAGAAAEELAEELLLLEGLLLLLLLEAEALEVAEELLELEEAALLLAAAAELAALLALLLALAAVEAAALLLAAL 571

                         410
                  ....*....|....*.
gi 1758723590 411 LKDLEKQATDLKQTIE 426
Cdd:COG2770   572 LLAAVAALLELAALLL 587
cztS_silS_copS TIGR01386
heavy metal sensor kinase; Members of this family contain a sensor histidine kinase domain ...
 35-120 1.34e-04

heavy metal sensor kinase; Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.


Pssm-ID: 273593 [Multi-domain]  Cd Length: 457  Bit Score: 43.92  E-value: 1.34e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590  35 IYVIYD--YFQSYVSQTVYNIIV-MLLGVVWSGILAYGAAVFLIKPLRKLEEAARKAAEGDIREDVPLPKTDDEIKSLSV 111
Cdd:TIGR01386 146 ITVALDinAHTHLLDALRKWLILiAVLLVLLTALLGWWITRLGLEPLRRLSAVAARISPESLDQRLDPSRAPAELRELAQ 225


                  ....*....
gi 1758723590 112 AFNMMLGNL 120
Cdd:TIGR01386 226 SFNAMLGRL 234
YesM COG2972
Sensor histidine kinase YesM [Signal transduction mechanisms];
11-127 9.61e-04

Sensor histidine kinase YesM [Signal transduction mechanisms];


Pssm-ID: 442211 [Multi-domain]  Cd Length: 445  Bit Score: 41.16  E-value: 9.61e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590  11 GLRTQLMLFTTVLAFITYSTSIFFIYVIYDYFQSYVSQTVYN-----IIVMLLGVVWSGILAYGAAVFLIKPLRKLEEAA 85
Cdd:COG2972   113 LLLSILLLILGLLLIILLLLSLLGWTLVSLIPKSELFRGLFSlrrliLLIILLLLLLALLLSYLLSRSITRPIKRLKKAM 192

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1758723590  86 RKAAEGDIREdvPLPKTDDEIKSLSVAFNMMLGNLRGMVKNI 127
Cdd:COG2972   193 KKVEKGDLVR--LEVSGNDEIGILARSFNEMVERIKELIEEV 232
PTZ00121 PTZ00121
MAEBL; Provisional
 73-426 1.16e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 41.67  E-value: 1.16e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590   73 FLIKPLRKLEEAARKAAEGDIREDVPLPKtdDEIKSLSVAFNMMLGNLRGMVKnidttfSYTNNQVQQIRKQTG-EATRQ 151
Cdd:PTZ00121  1024 FNIEKIEELTEYGNNDDVLKEKDIIDEDI--DGNHEGKAEAKAHVGQDEGLKP------SYKDFDFDAKEDNRAdEATEE 1095

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590  152 AQGVSETLAEISSG-AEQSAASIQAIVSAVDtttsiASEVEEKAKQSDTLSSEMVQALGHSTRVftsliqgiqTLAKENE 230
Cdd:PTZ00121  1096 AFGKAEEAKKTETGkAEEARKAEEAKKKAED-----ARKAEEARKAEDARKAEEARKAEDAKRV---------EIARKAE 1161

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590  231 DSmqnvQKLEERMKQVEhivsvvsaiasqtnllalNASIEAARAGEHGRGfavvAEEVRKLAD----ESDHSARNISQL- 305
Cdd:PTZ00121  1162 DA----RKAEEARKAED------------------AKKAEAARKAEEVRK----AEELRKAEDarkaEAARKAEEERKAe 1215

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590  306 -LRNMQDEVQQVAMKMTEQVKIAKEEAKRGEATElilkemsssvmevadATQQISSYMNEQVSHIHQTGAQTKAVAAIAE 384
Cdd:PTZ00121  1216 eARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEER---------------NNEEIRKFEEARMAHFARRQAAIKAEEARKA 1280

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*
gi 1758723590  385 ETSAGSQEVARV-TLQQSKNMIVIDQLLKDLE--KQATDLKQTIE 426
Cdd:PTZ00121  1281 DELKKAEEKKKAdEAKKAEEKKKADEAKKKAEeaKKADEAKKKAE 1325
NarQ COG3850
Signal transduction histidine kinase NarQ, nitrate/nitrite-specific [Signal transduction ...
 53-296 2.77e-03

Signal transduction histidine kinase NarQ, nitrate/nitrite-specific [Signal transduction mechanisms];


Pssm-ID: 443059 [Multi-domain]  Cd Length: 448  Bit Score: 39.87  E-value: 2.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590  53 IIVMLLGVVWSGILAYGAAVFLIKPLRKLEEAARKAAEGDIREDVPLpKTDDEIKSLSVAFNMMLGNLRGMVKNIDTTFS 132
Cdd:COG3850   121 LLRLLLALLLALLLAYLLRRRIVRPLRRLTQAAERIARGDFDARVPV-SGRDELGTLARAFNRMADELQELYAELEEEEE 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 133 YTNNQVQQIRKQTGEATRQAQGVSETLAEISSGAEQSAASIQAIVSAVDTTTSIASEVEEKAKQSDTLSSEMVQALGHST 212
Cdd:COG3850   200 LEAELELLALLDELLLLAALLLLLALLLALLLAALLAALLLLLLLQDALAESELLALNILAGLLELLLALLLLLLASALL 279

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1758723590 213 RVFTSLIQGIQTLAKENEDSMQNVQKLEERMKQVEHIVSVVSAIASQTNLLALNASIEAARAGEHGRGFAVVAEEVRKLA 292
Cdd:COG3850   280 LLELELLALLLELVELLALAAAEEALLLLVELAALLLLLLLQAIANASLLLIALASVVAALLELASILALQAALEAAAAG 359


                  ....
gi 1758723590 293 DESD 296
Cdd:COG3850   360 AALA 363
PRK10604 PRK10604
sensor protein RstB; Provisional
 66-124 5.73e-03

sensor protein RstB; Provisional


Pssm-ID: 236724 [Multi-domain]  Cd Length: 433  Bit Score: 38.82  E-value: 5.73e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1758723590  66 LAYGAAVFL-IKP----LRKLEEAARKAAEGDIREDVPLPKTdDEIKSLSVAFNMMLGNLRGMV 124
Cdd:PRK10604  147 LSLAFPVFLwMRPhwqdMLKLEAAAQRLGDGHLAERIHFDEG-SSLERLGVAFNQMADNINALI 209
envZ PRK09467
osmolarity sensor protein; Provisional
 49-116 6.50e-03

osmolarity sensor protein; Provisional


Pssm-ID: 236531 [Multi-domain]  Cd Length: 435  Bit Score: 38.74  E-value: 6.50e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1758723590  49 TVYNIIVMLLGVVwsgilayGAAVF---LIKPLRKLEEAARKAAEGDIREdvPLP-KTDDEIKSLSVAFNMM 116
Cdd:PRK09467  156 FRYTLAIGLLSVA-------GGWLFiriQNRPLVALEHAALQVGKGEIPP--PLReYGASEVRSVTRAFNQM 218
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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