|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
2-252 |
9.13e-135 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 380.67 E-value: 9.13e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 2 TSALFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKL 81
Cdd:PRK10575 8 SDTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 82 AYLPQQTAPAAGMLVRELVALGRYPWHGALGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAE 161
Cdd:PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSR 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 162 CLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMVPERLEEIYGI 241
Cdd:PRK10575 168 CLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGETLEQIYGI 247
|
250
....*....|.
gi 1759772862 242 PMEVMQHTSTG 252
Cdd:PRK10575 248 PMGILPHPAGA 258
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
5-258 |
9.33e-127 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 359.74 E-value: 9.33e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 5 LFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYL 84
Cdd:COG1120 1 MLEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRRELARRIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 85 PQQTAPAAGMLVRELVALGRYPWHGALGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLL 164
Cdd:COG1120 81 PQEPPAPFGLTVRELVALGRYPHLGLFGRPSAEDREAVEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEPPLLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 165 LDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMVPERLEEIYGIPME 244
Cdd:COG1120 161 LDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEVLTPELLEEVYGVEAR 240
|
250
....*....|....
gi 1759772862 245 VMQHTSTGQLIASP 258
Cdd:COG1120 241 VIEDPVTGRPLVLP 254
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
7-248 |
4.32e-94 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 276.96 E-value: 4.32e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYLPQ 86
Cdd:COG4604 3 EIKNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSRELAKRLAILRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 QTAPAAGMLVRELVALGRYPWHGalGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLD 166
Cdd:COG4604 83 ENHINSRLTVRELVAFGRFPYSK--GRLTAEDREIIDEAIAYLDLEDLADRYLDELSGGQRQRAFIAMVLAQDTDYVLLD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 167 EPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMVPERLEEIYGIPMEVM 246
Cdd:COG4604 161 EPLNNLDMKHSVQMMKLLRRLADELGKTVVIVLHDINFASCYADHIVAMKDGRVVAQGTPEEIITPEVLSDIYDTDIEVE 240
|
..
gi 1759772862 247 QH 248
Cdd:COG4604 241 EI 242
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
7-253 |
1.05e-88 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 263.51 E-value: 1.05e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYLPQ 86
Cdd:COG4559 3 EAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWELARRRAVLPQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 QTAPAAGMLVRELVALGRYPWhgalGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQ-------D 159
Cdd:COG4559 83 HSSLAFPFTVEEVVALGRAPH----GSSAAQDRQIVREALALVGLAHLAGRSYQTLSGGEQQRVQLARVLAQlwepvdgG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 160 AECLLLDEPTSALDIAHQIEVLSLVRKLSHEKdLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMVPERLEEIY 239
Cdd:COG4559 159 PRWLFLDEPTSALDLAHQHAVLRLARQLARRG-GGVVAVLHDLNLAAQYADRILLLHQGRLVAQGTPEEVLTDELLERVY 237
|
250
....*....|....
gi 1759772862 240 GIPMEVMQHTSTGQ 253
Cdd:COG4559 238 GADLRVLAHPEGGC 251
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
7-253 |
4.06e-88 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 261.87 E-value: 4.06e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYLPQ 86
Cdd:PRK11231 4 RTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 QTAPAAGMLVRELVALGRYPWHGALGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLD 166
Cdd:PRK11231 84 HHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLD 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 167 EPTSALDIAHQIEVLSLVRKLSHEKDlSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMVPERLEEIYGIPMEVM 246
Cdd:PRK11231 164 EPTTYLDINHQVELMRLMRELNTQGK-TVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPGLLRTVFDVEAEIH 242
|
....*..
gi 1759772862 247 QHTSTGQ 253
Cdd:PRK11231 243 PEPVSGT 249
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
4-253 |
4.43e-84 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 251.61 E-value: 4.43e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 4 ALFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAY 83
Cdd:PRK13548 1 AMLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 84 LPQQTAPAAGMLVRELVALGRYPWhgalGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAEC- 162
Cdd:PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPH----GLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPd 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 163 -----LLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMVPERLEE 237
Cdd:PRK13548 157 gpprwLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTPETLRR 236
|
250
....*....|....*.
gi 1759772862 238 IYGIPMEVMQHTSTGQ 253
Cdd:PRK13548 237 VYGADVLVQPHPETGA 252
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
7-223 |
2.77e-81 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 241.57 E-value: 2.77e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYLPQ 86
Cdd:cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 qtapaagmlvrelvalgrypwhgalgrfgatdrqkveeAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLD 166
Cdd:cd03214 81 --------------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLD 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1759772862 167 EPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQ 223
Cdd:cd03214 123 EPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ 179
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-248 |
1.23e-80 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 242.30 E-value: 1.23e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 1 MTSALFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALgdwgdREFARK 80
Cdd:COG1121 2 MMMPAIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPP-----RRARRR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 81 LAYLPQQTAPAAG--MLVRELVALGRYPWHGALGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQ 158
Cdd:COG1121 77 IGYVPQRAEVDWDfpITVRDVVLMGRYGRRGLFRRPSRADREAVDEALERVGLEDLADRPIGELSGGQQQRVLLARALAQ 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 159 DAECLLLDEPTSALDIAHQIEVLSLVRKLsHEKDLSVFVVLHDVNMAARFCDEVFALhSGRLIAQSTPKGIMVPERLEEI 238
Cdd:COG1121 157 DPDLLLLDEPFAGVDAATEEALYELLREL-RREGKTILVVTHDLGAVREYFDRVLLL-NRGLVAHGPPEEVLTPENLSRA 234
|
250
....*....|
gi 1759772862 239 YGIPMEVMQH 248
Cdd:COG1121 235 YGGPVALLAH 244
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
7-223 |
2.09e-67 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 207.77 E-value: 2.09e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDRefarkLAYLPQ 86
Cdd:cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKR-----IGYVPQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 Q-----TAPaagMLVRELVALGRYPWHGALGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAE 161
Cdd:cd03235 76 RrsidrDFP---ISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPD 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1759772862 162 CLLLDEPTSALDIAHQIEVLSLVRKLsHEKDLSVFVVLHDVNMAARFCDEVFALhSGRLIAQ 223
Cdd:cd03235 153 LLLLDEPFAGVDPKTQEDIYELLREL-RREGMTILVVTHDLGLVLEYFDRVLLL-NRTVVAS 212
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
9-258 |
3.04e-65 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 204.06 E-value: 3.04e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 9 ENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYLPQQT 88
Cdd:PRK10253 11 EQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 89 APAAGMLVRELVALGRYPWHGALGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEP 168
Cdd:PRK10253 91 TTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEP 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 169 TSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMVPERLEEIYGIPMEVMQH 248
Cdd:PRK10253 171 TTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIERIYGLRCMIIDD 250
|
250
....*....|
gi 1759772862 249 TSTGQLIASP 258
Cdd:PRK10253 251 PVAGTPLVVP 260
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
7-258 |
5.82e-59 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 191.98 E-value: 5.82e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYLPQ 86
Cdd:PRK09536 5 DVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 QTAPAAGMLVRELVALGRYPWHGALGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLD 166
Cdd:PRK09536 85 DTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLD 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 167 EPTSALDIAHQIEVLSLVRKLShEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMVPERLEEIYGIPMEVM 246
Cdd:PRK09536 165 EPTASLDINHQVRTLELVRRLV-DDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRAAFDARTAVG 243
|
250
....*....|..
gi 1759772862 247 QHTSTGQLIASP 258
Cdd:PRK09536 244 TDPATGAPTVTP 255
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
6-237 |
8.05e-56 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 178.68 E-value: 8.05e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 6 FELENVTFS-AAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYL 84
Cdd:COG1122 1 IELENLSFSyPGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLRELRRKVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 85 PQQtaPAA---GMLVRELVALGrypwhgaLGRFGATD---RQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQ 158
Cdd:COG1122 81 FQN--PDDqlfAPTVEEDVAFG-------PENLGLPReeiRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAM 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 159 DAECLLLDEPTSALDIAHQIEVLSLVRKLsHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMV-PERLEE 237
Cdd:COG1122 152 EPEVLVLDEPTAGLDPRGRRELLELLKRL-NKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVFSdYELLEE 230
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
4-240 |
2.05e-54 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 175.63 E-value: 2.05e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 4 ALFELENVTFS-AAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDRE---FAR 79
Cdd:COG3638 1 PMLELRNLSKRyPGGTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRGRAlrrLRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 80 KLAYLPQQTApaagmLVREL-----V---ALGRYP-WHGALGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRV 150
Cdd:COG3638 81 RIGMIFQQFN-----LVPRLsvltnVlagRLGRTStWRSLLGLFPPEDRERALEALERVGLADKAYQRADQLSGGQQQRV 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 151 WLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIm 230
Cdd:COG3638 156 AIARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRYADRIIGLRDGRVVFDGPPAEL- 234
|
250
....*....|
gi 1759772862 231 VPERLEEIYG 240
Cdd:COG3638 235 TDAVLREIYG 244
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
7-239 |
3.24e-53 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 172.17 E-value: 3.24e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGdREFARKLAYLPQ 86
Cdd:COG1131 2 EVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDP-AEVRRRIGYVPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 QTAPAAGMLVRELVALgrypwHGAL-GRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLL 165
Cdd:COG1131 81 EPALYPDLTVRENLRF-----FARLyGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLIL 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1759772862 166 DEPTSALDIAHQIEVLSLVRKLShEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMvPERLEEIY 239
Cdd:COG1131 156 DEPTSGLDPEARRELWELLRELA-AEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELK-ARLLEDVF 227
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
21-257 |
4.63e-52 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 169.64 E-value: 4.63e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 21 LQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPvSGGTVRFAGKALGDWGDREFARKLAYLPQQTAPAAGMLVRELV 100
Cdd:COG4138 12 LGPISAQVNAGELIHLIGPNGAGKSTLLARMAGLLP-GQGEILLNGRPLSDWSAAELARHRAYLSQQQSPPFAMPVFQYL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 101 ALgrypwHGALGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQ-------DAECLLLDEPTSALD 173
Cdd:COG4138 91 AL-----HQPAGASSEAVEQLLAQLAEALGLEDKLSRPLTQLSGGEWQRVRLAAVLLQvwptinpEGQLLLLDEPMNSLD 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 174 IAHQIEVLSLVRKLShEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMVPERLEEIYGIPMEVMQHTSTGQ 253
Cdd:COG4138 166 VAQQAALDRLLRELC-QQGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAEVMTPENLSEVFGVKFRRLEVEGHRW 244
|
....
gi 1759772862 254 LIAS 257
Cdd:COG4138 245 LIPT 248
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
17-243 |
5.89e-52 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 170.39 E-value: 5.89e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 17 GHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSG--------GTVRFAGKALGDWGDREFARKLAYLPQQT 88
Cdd:PRK13547 13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGaprgarvtGDVTLNGEPLAAIDAPRLARLRAVLPQAA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 89 APAAGMLVRELVALGRYPWHGALGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQ---------D 159
Cdd:PRK13547 93 QPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQlwpphdaaqP 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 160 AECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMVPERLEEIY 239
Cdd:PRK13547 173 PRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLTPAHIARCY 252
|
....
gi 1759772862 240 GIPM 243
Cdd:PRK13547 253 GFAV 256
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
7-219 |
4.17e-51 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 166.10 E-value: 4.17e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGH--VLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYL 84
Cdd:cd03225 1 ELKNLSFSYPDGarPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 85 PQQtaPAA---GMLVRELVALGRypwhGALGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAE 161
Cdd:cd03225 81 FQN--PDDqffGPTVEEEVAFGL----ENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPD 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1759772862 162 CLLLDEPTSALDIAHQIEVLSLVRKLsHEKDLSVFVVLHDVNMAARFCDEVFALHSGR 219
Cdd:cd03225 155 ILLLDEPTAGLDPAGRRELLELLKKL-KAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
6-220 |
6.36e-50 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 163.06 E-value: 6.36e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 6 FELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYLP 85
Cdd:COG4619 1 LELEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPPPEWRRQVAYVP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 86 QQTAPAAGMlVRELValgRYPWHGALGRFgatDRQKVEEAIELTGIGA-FADRLVDTLSGGERQRVWLAMLVAQDAECLL 164
Cdd:COG4619 81 QEPALWGGT-VRDNL---PFPFQLRERKF---DRERALELLERLGLPPdILDKPVERLSGGERQRLALIRALLLQPDVLL 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1759772862 165 LDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRL 220
Cdd:COG4619 154 LDEPTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
7-230 |
2.27e-48 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 159.91 E-value: 2.27e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARK-LAYLP 85
Cdd:cd03219 2 EVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLgIGRTF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 86 QQTAPAAGMLVRELVALGRYPWHGALGRFG------ATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQD 159
Cdd:cd03219 82 QIPRLFPELTVLENVMVAAQARTGSGLLLArarreeREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATD 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1759772862 160 AECLLLDEPTSALDIAHQIEVLSLVRKLShEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIM 230
Cdd:cd03219 162 PKLLLLDEPAAGLNPEETEELAELIRELR-ERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVR 231
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
16-207 |
8.64e-48 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 157.01 E-value: 8.64e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 16 AGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGkalgdwgdrefARKLAYLPQQTAPAAGM- 94
Cdd:NF040873 3 GGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAG-----------GARVAYVPQRSEVPDSLp 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 95 -LVRELVALGRYPWHGALGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALD 173
Cdd:NF040873 72 lTVRDLVAMGRWARRGLWRRLTRDDRAAVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTTGLD 151
|
170 180 190
....*....|....*....|....*....|....
gi 1759772862 174 IAHQIEVLSLVRKLsHEKDLSVFVVLHDVNMAAR 207
Cdd:NF040873 152 AESRERIIALLAEE-HARGATVVVVTHDLELVRR 184
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
5-239 |
2.72e-46 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 154.63 E-value: 2.72e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 5 LFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDwGDREFARKLAYL 84
Cdd:COG4555 1 MIEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRK-EPREARRQIGVL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 85 PQQTAPAAGMLVRELValgRYpwHGAL-GRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECL 163
Cdd:COG4555 80 PDERGLYDRLTVRENI---RY--FAELyGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVL 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1759772862 164 LLDEPTSALDIAHQIEVLSLVRKLSHEkDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIM---VPERLEEIY 239
Cdd:COG4555 155 LLDEPTNGLDVMARRLLREILRALKKE-GKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELReeiGEENLEDAF 232
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
6-239 |
1.36e-45 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 152.72 E-value: 1.36e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 6 FELENVTFS-AAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGD---REFARKL 81
Cdd:cd03256 1 IEVENLSKTyPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGkalRQLRRQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 82 AYLPQQTAPAAGMLVRELVALGRYP----WHGALGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVA 157
Cdd:cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGrrstWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 158 QDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGImVPERLEE 237
Cdd:cd03256 161 QQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL-TDEVLDE 239
|
..
gi 1759772862 238 IY 239
Cdd:cd03256 240 IY 241
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
2-239 |
1.54e-45 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 153.27 E-value: 1.54e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 2 TSALFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARK- 80
Cdd:COG0411 1 SDPLLEVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRIARLg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 81 LAYLPQQTAPAAGMLVRELVALG-----RYPWHGALGRFGAT------DRQKVEEAIELTGIGAFADRLVDTLSGGERQR 149
Cdd:COG0411 81 IARTFQNPRLFPELTVLENVLVAaharlGRGLLAALLRLPRArreereARERAEELLERVGLADRADEPAGNLSYGQQRR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 150 VWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGI 229
Cdd:COG0411 161 LEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVMGLADRIVVLDFGRVIAEGTPAEV 240
|
250
....*....|
gi 1759772862 230 MVPERLEEIY 239
Cdd:COG0411 241 RADPRVIEAY 250
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-257 |
4.47e-45 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 158.14 E-value: 4.47e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 1 MTSALFELENVTFS-----AAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGD- 74
Cdd:COG1123 256 AAEPLLEVRNLSKRypvrgKGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRr 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 75 --REFARKLAYLPQQtaPAA----GMLVRELVALG-RYpwHGALGRfgATDRQKVEEAIELTGIGA-FADRLVDTLSGGE 146
Cdd:COG1123 336 slRELRRRVQMVFQD--PYSslnpRMTVGDIIAEPlRL--HGLLSR--AERRERVAELLERVGLPPdLADRYPHELSGGQ 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 147 RQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTP 226
Cdd:COG1123 410 RQRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPT 489
|
250 260 270
....*....|....*....|....*....|.
gi 1759772862 227 kgimvperlEEIYGIPmevmQHTSTGQLIAS 257
Cdd:COG1123 490 ---------EEVFANP----QHPYTRALLAA 507
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
5-230 |
1.71e-44 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 150.34 E-value: 1.71e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 5 LFELENVTFS----AAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARK 80
Cdd:COG1124 1 MLEVRNLSVSygqgGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRRKAFRRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 81 LAYLPQQtaPAA----GMLVRELVALGRYpwhgALGRFGATDRqkVEEAIELTGIG-AFADRLVDTLSGGERQRVWLAML 155
Cdd:COG1124 81 VQMVFQD--PYAslhpRHTVDRILAEPLR----IHGLPDREER--IAELLEQVGLPpSFLDRYPHQLSGGQRQRVAIARA 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1759772862 156 VAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIM 230
Cdd:COG1124 153 LILEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLL 227
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
7-220 |
7.06e-44 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 147.64 E-value: 7.06e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFS----AAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFA---- 78
Cdd:cd03255 2 ELKNLSKTygggGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAafrr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 79 RKLAYLPQQTAPAAGMLVRELVALgryPWHGAlGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQ 158
Cdd:cd03255 82 RHIGFVFQSFNLLPDLTALENVEL---PLLLA-GVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALAN 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1759772862 159 DAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMaARFCDEVFALHSGRL 220
Cdd:cd03255 158 DPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-AEYADRIIELRDGKI 218
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
3-248 |
9.53e-44 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 148.31 E-value: 9.53e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 3 SALFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQ-PVSGGTVRFAGKALGDWGDREFARKL 81
Cdd:COG1119 1 DPLLELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLpPTYGNDVRLFGERRGGEDVWELRKRI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 82 AYL-PQ-QTAPAAGMLVRELVALGRYpwhGALGRF---GATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLV 156
Cdd:COG1119 81 GLVsPAlQLRFPRDETVLDVVLSGFF---DSIGLYrepTDEQRERARELLELLGLAHLADRPFGTLSQGEQRRVLIARAL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 157 AQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMVPERLE 236
Cdd:COG1119 158 VKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHHVEEIPPGITHVLLLKDGRVVAAGPKEEVLTSENLS 237
|
250
....*....|..
gi 1759772862 237 EIYGIPMEVMQH 248
Cdd:COG1119 238 EAFGLPVEVERR 249
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
7-226 |
6.50e-43 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 145.72 E-value: 6.50e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGK---ALGDWGDREFARKLAY 83
Cdd:cd03261 2 ELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEdisGLSEAELYRLRRRMGM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 84 LPQQTAPAAGMLVRELVALGRYPwHGALGRfgATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECL 163
Cdd:cd03261 82 LFQSGALFDSLTVFENVAFPLRE-HTRLSE--EEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1759772862 164 LLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTP 226
Cdd:cd03261 159 LYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTP 221
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
21-255 |
1.23e-42 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 145.46 E-value: 1.23e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 21 LQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPvSGGTVRFAGKALGDWGDREFARKLAYLPQQTAPAAGMLVRELV 100
Cdd:PRK03695 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 101 ALgrypwHGALGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQ-------DAECLLLDEPTSALD 173
Cdd:PRK03695 91 TL-----HQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQvwpdinpAGQLLLLDEPMNSLD 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 174 IAHQIEVLSLVRKLShEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMVPERLEEIYGIPMEVMQHTSTGQ 253
Cdd:PRK03695 166 VAQQAALDRLLSELC-QQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPENLAQVFGVNFRRLDVEGHPM 244
|
..
gi 1759772862 254 LI 255
Cdd:PRK03695 245 LI 246
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
7-230 |
1.50e-42 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 152.22 E-value: 1.50e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAA-GHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYLP 85
Cdd:COG4988 338 ELEDVSFSYPgGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPASWRRQIAWVP 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 86 QQTAPAAGMlVRELValgrypwhgALGRFGATDRQkVEEAIELTGIGAFADRL---VDT--------LSGGERQRVWLAM 154
Cdd:COG4988 418 QNPYLFAGT-IRENL---------RLGRPDASDEE-LEAALEAAGLDEFVAALpdgLDTplgeggrgLSGGQAQRLALAR 486
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1759772862 155 LVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKdlSVFVVLHDVNMAARfCDEVFALHSGRLIAQSTPKGIM 230
Cdd:COG4988 487 ALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGR--TVILITHRLALLAQ-ADRILVLDDGRIVEQGTHEELL 559
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
4-175 |
1.80e-42 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 143.77 E-value: 1.80e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 4 ALFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDrEFARKLAY 83
Cdd:COG4133 1 MMLEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDARE-DYRRRLAY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 84 LPQQTAPAAGMLVRELVALgrypWHGALGRfgATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECL 163
Cdd:COG4133 80 LGHADGLKPELTVRENLRF----WAALYGL--RADREAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLW 153
|
170
....*....|..
gi 1759772862 164 LLDEPTSALDIA 175
Cdd:COG4133 154 LLDEPFTALDAA 165
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
7-241 |
3.70e-42 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 143.74 E-value: 3.70e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFsAAGHVLLQpLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDwgDREFARKLAYLPQ 86
Cdd:COG3840 3 RLDDLTY-RYGDFPLR-FDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTA--LPPAERPVSMLFQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 QTAPAAGMLVRELVALGRYPwhgALgRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLD 166
Cdd:COG3840 79 ENNLFPHLTVAQNIGLGLRP---GL-KLTAEQRAQVEQALERVGLAGLLDRLPGQLSGGQRQRVALARCLVRKRPILLLD 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1759772862 167 EPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIM---VPERLEEIYGI 241
Cdd:COG3840 155 EPFSALDPALRQEMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLdgePPPALAAYLGI 232
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-238 |
8.56e-42 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 149.28 E-value: 8.56e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 1 MTSALfELENVTFSAAG--HVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSG---GTVRFAGKALGDWGDR 75
Cdd:COG1123 1 MTPLL-EVRDLSVRYPGgdVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGGrisGEVLLDGRDLLELSEA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 76 EFARKLAYLPQQTAPAAGML-VRELVALGRYpwhgALGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAM 154
Cdd:COG1123 80 LRGRRIGMVFQDPMTQLNPVtVGDQIAEALE----NLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAM 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 155 LVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMV-PE 233
Cdd:COG1123 156 ALALDPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAaPQ 235
|
....*
gi 1759772862 234 RLEEI 238
Cdd:COG1123 236 ALAAV 240
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
17-240 |
1.78e-41 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 142.44 E-value: 1.78e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 17 GHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGD---REFARKLAYLPQQTAPAAG 93
Cdd:TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGkklRKLRRRIGMIFQHYNLIER 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 94 MLVRELVALGRYP----WHGALGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPT 169
Cdd:TIGR02315 94 LTVLENVLHGRLGykptWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPI 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1759772862 170 SALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGImVPERLEEIYG 240
Cdd:TIGR02315 174 ASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL-DDEVLRHIYG 243
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1-224 |
2.52e-41 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 141.33 E-value: 2.52e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 1 MTSALfELENVTFS----AAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDRE 76
Cdd:COG1136 1 MSPLL-ELRNLTKSygtgEGEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSERE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 77 FA----RKLAYLPQQ-------TApaagmlvRELVALGRYPwhgaLGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGG 145
Cdd:COG1136 80 LArlrrRHIGFVFQFfnllpelTA-------LENVALPLLL----AGVSRKERRERARELLERVGLGDRLDHRPSQLSGG 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1759772862 146 ERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARfCDEVFALHSGRLIAQS 224
Cdd:COG1136 149 QQQRVAIARALVNRPKLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDPELAAR-ADRVIRLRDGRIVSDE 226
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
7-222 |
2.65e-41 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 140.73 E-value: 2.65e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREfaRKLAYLPQ 86
Cdd:cd03259 2 ELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER--RNIGMVFQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 QTAPAAGMLVRELVALGRYpwhgALGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLD 166
Cdd:cd03259 80 DYALFPHLTVAENIAFGLK----LRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLD 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1759772862 167 EPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIA 222
Cdd:cd03259 156 EPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
7-219 |
1.16e-40 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 137.38 E-value: 1.16e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYLPQ 86
Cdd:cd00267 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 qtapaagmlvrelvalgrypwhgalgrfgatdrqkveeaieltgigafadrlvdtLSGGERQRVWLAMLVAQDAECLLLD 166
Cdd:cd00267 81 -------------------------------------------------------LSGGQRQRVALARALLLNPDLLLLD 105
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1759772862 167 EPTSALDIAHQIEVLSLVRKLsHEKDLSVFVVLHDVNMAARFCDEVFALHSGR 219
Cdd:cd00267 106 EPTSGLDPASRERLLELLREL-AEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-230 |
1.31e-40 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 139.73 E-value: 1.31e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 1 MTSALFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFA-- 78
Cdd:COG1127 1 MSEPMIEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKELYel 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 79 -RKLAYLPQQTAPAAGMLVRELVALG-RYpwHGALGRfgATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLV 156
Cdd:COG1127 81 rRRIGMLFQGGALFDSLTVFENVAFPlRE--HTDLSE--AEIRELVLEKLELVGLPGAADKMPSELSGGMRKRVALARAL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1759772862 157 AQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIM 230
Cdd:COG1127 157 ALDPEILLYDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEELL 230
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
10-223 |
3.25e-40 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 138.41 E-value: 3.25e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 10 NVTFSAAGHV--LLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFA---RKLAYL 84
Cdd:cd03257 8 SVSFPTGGGSvkALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKirrKEIQMV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 85 PQQtaPAA----GMLVRELVAlgrypwHGALGRFGATDRQKVEEAI--ELTGIG---AFADRLVDTLSGGERQRVWLAML 155
Cdd:cd03257 88 FQD--PMSslnpRMTIGEQIA------EPLRIHGKLSKKEARKEAVllLLVGVGlpeEVLNRYPHELSGGQRQRVAIARA 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1759772862 156 VAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQ 223
Cdd:cd03257 160 LALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEE 227
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
7-223 |
1.16e-39 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 136.55 E-value: 1.16e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGsLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDrEFARKLAYLPQ 86
Cdd:cd03264 2 QLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQ-KLRRRIGYLPQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 QTAPAAGMLVRELVAlgrypWHGALGRFGATD-RQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLL 165
Cdd:cd03264 80 EFGVYPNFTVREFLD-----YIAWLKGIPSKEvKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIV 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1759772862 166 DEPTSALDIAHQIEVLSLVRKLSHEKdlSVFVVLHDVNMAARFCDEVFALHSGRLIAQ 223
Cdd:cd03264 155 DEPTAGLDPEERIRFRNLLSELGEDR--IVILSTHIVEDVESLCNQVAVLNKGKLVFE 210
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
6-229 |
1.33e-39 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 136.93 E-value: 1.33e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 6 FELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILAR------QQPVSgGTVRFAGKALGDWGDR--EF 77
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRlndlipGAPDE-GEVLLDGKDIYDLDVDvlEL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 78 ARKLAYLPQQTAPAAgMLVRELVALGryPW-HGALGRFGATDRqkVEEAIELTGI-GAFADRLVDT-LSGGERQRVWLAM 154
Cdd:cd03260 80 RRRVGMVFQKPNPFP-GSIYDNVAYG--LRlHGIKLKEELDER--VEEALRKAALwDEVKDRLHALgLSGGQQQRLCLAR 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1759772862 155 LVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSheKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGI 229
Cdd:cd03260 155 ALANEPEVLLLDEPTSALDPISTAKIEELIAELK--KEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
21-170 |
5.90e-39 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 132.77 E-value: 5.90e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 21 LQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYLPQQTAPAAGMLVRELV 100
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKEIGYVFQDPQLFPRLTVRENL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1759772862 101 ALGRYPWhgalGRFGATDRQKVEEAIELTGIGAFADRLVD----TLSGGERQRVWLAMLVAQDAECLLLDEPTS 170
Cdd:pfam00005 81 RLGLLLK----GLSKREKDARAEEALEKLGLGDLADRPVGerpgTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
7-219 |
1.36e-38 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 132.51 E-value: 1.36e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFS--AAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYL 84
Cdd:cd03228 2 EFKNVSFSypGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 85 PQQTApaagmlvrelvalgrypwhgalgRFGATdrqkVEEAIeltgigafadrlvdtLSGGERQRVWLAMLVAQDAECLL 164
Cdd:cd03228 82 PQDPF-----------------------LFSGT----IRENI---------------LSGGQRQRIAIARALLRDPPILI 119
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1759772862 165 LDEPTSALDIAHQIEVLSLVRKLSHEKdlSVFVVLHDVNMaARFCDEVFALHSGR 219
Cdd:cd03228 120 LDEATSALDPETEALILEALRALAKGK--TVIVIAHRLST-IRDADRIIVLDDGR 171
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
7-220 |
1.17e-36 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 127.51 E-value: 1.17e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDwGDREFARKLAYLPQ 86
Cdd:cd03230 2 EVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKK-EPEEVKRRIGYLPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 QTAPAAGMLVRELValgrypwhgalgrfgatdrqkveeaieltgigafadrlvdTLSGGERQRVWLAMLVAQDAECLLLD 166
Cdd:cd03230 81 EPSLYENLTVRENL----------------------------------------KLSGGMKQRLALAQALLHDPELLILD 120
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1759772862 167 EPTSALDIAHQIEVLSLVRKLShEKDLSVFVVLHDVNMAARFCDEVFALHSGRL 220
Cdd:cd03230 121 EPTSGLDPESRREFWELLRELK-KEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
7-223 |
2.42e-36 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 128.36 E-value: 2.42e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFS----AAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALgdwgdREFARKLA 82
Cdd:cd03293 2 EVRNVSKTygggGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPV-----TGPGPDRG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 83 YLPQQTAPAAGMLVRELVALGRypwhGALGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAEC 162
Cdd:cd03293 77 YVFQQDALLPWLTVLDNVALGL----ELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDV 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1759772862 163 LLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFAL--HSGRLIAQ 223
Cdd:cd03293 153 LLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLsaRPGRIVAE 215
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-239 |
4.34e-36 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 130.99 E-value: 4.34e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 1 MTSALFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKalgDWGDRE-FAR 79
Cdd:COG3842 1 MAMPALELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGR---DVTGLPpEKR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 80 KLAYLPQQTA--PAagMLVRELVALG-RypwhgaLGRFGATDR-QKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAML 155
Cdd:COG3842 78 NVGMVFQDYAlfPH--LTVAENVAFGlR------MRGVPKAEIrARVAELLELVGLEGLADRYPHQLSGGQQQRVALARA 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 156 VAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPkgimvperl 235
Cdd:COG3842 150 LAPEPRVLLLDEPLSALDAKLREEMREELRRLQRELGITFIYVTHDQEEALALADRIAVMNDGRIEQVGTP--------- 220
|
....
gi 1759772862 236 EEIY 239
Cdd:COG3842 221 EEIY 224
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-222 |
6.07e-36 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 128.28 E-value: 6.07e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 1 MTSALFELENVTFS----AAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALgdwgdRE 76
Cdd:COG1116 3 AAAPALELRGVSKRfptgGGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPV-----TG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 77 FARKLAYLPQQTApaagmL-----VRELVALGRypwhGALGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVW 151
Cdd:COG1116 78 PGPDRGVVFQEPA-----LlpwltVLDNVALGL----ELRGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVA 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1759772862 152 LAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHS--GRLIA 222
Cdd:COG1116 149 IARALANDPEVLLMDEPFGALDALTRERLQDELLRLWQETGKTVLFVTHDVDEAVFLADRVVVLSArpGRIVE 221
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
7-226 |
7.88e-36 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 127.10 E-value: 7.88e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAG-KALGDwgDREFARKLAYLP 85
Cdd:cd03265 2 EVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGhDVVRE--PREVRRRIGIVF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 86 QQTApaagmLVRELVALGRYPWHGAL-GRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLL 164
Cdd:cd03265 80 QDLS-----VDDELTGWENLYIHARLyGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLF 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1759772862 165 LDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTP 226
Cdd:cd03265 155 LDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTP 216
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
7-238 |
1.00e-35 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 127.93 E-value: 1.00e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFS-AAGHVL-LQPLTMSIPVGSLTALIGHNGSGKSTLLKIL-ARQQPVSGgTVRFAGKALGD----WGDREFAr 79
Cdd:TIGR04520 2 EVENVSFSyPESEKPaLKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLnGLLLPTSG-KVTVDGLDTLDeenlWEIRKKV- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 80 klaylpqqtapaaGM------------LVRELVAlgrypwhgalgrFG--------ATDRQKVEEAIELTGIGAFADRLV 139
Cdd:TIGR04520 80 -------------GMvfqnpdnqfvgaTVEDDVA------------FGlenlgvprEEMRKRVDEALKLVGMEDFRDREP 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 140 DTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARfCDEVFALHSGR 219
Cdd:TIGR04520 135 HLLSGGQKQRVAIAGVLAMRPDIIILDEATSMLDPKGRKEVLETIRKLNKEEGITVISITHDMEEAVL-ADRVIVMNKGK 213
|
250 260
....*....|....*....|
gi 1759772862 220 LIAQSTPKGIMV-PERLEEI 238
Cdd:TIGR04520 214 IVAEGTPREIFSqVELLKEI 233
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
6-219 |
1.97e-35 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 124.61 E-value: 1.97e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 6 FELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGD--REFARKLAY 83
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDelPPLRRRIGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 84 LPQQTAPAAGMLVRELVALGrypwhgalgrfgatdrqkveeaieltgigafadrlvdtLSGGERQRVWLAMLVAQDAECL 163
Cdd:cd03229 81 VFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPDVL 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1759772862 164 LLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGR 219
Cdd:cd03229 123 LLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
6-230 |
2.25e-35 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 133.42 E-value: 2.25e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 6 FELENVTFSAAGHV--LLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAY 83
Cdd:COG2274 474 IELENVSFRYPGDSppVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQIDPASLRRQIGV 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 84 LPQQTapaagmlvrelvalgrYPWHG------ALGRFGATDrQKVEEAIELTGIGAFADRLVD-----------TLSGGE 146
Cdd:COG2274 554 VLQDV----------------FLFSGtireniTLGDPDATD-EEIIEAARLAGLHDFIEALPMgydtvvgeggsNLSGGQ 616
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 147 RQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKdlSVFVVLHDVNMaARFCDEVFALHSGRLIAQSTP 226
Cdd:COG2274 617 RQRLAIARALLRNPRILILDEATSALDAETEAIILENLRRLLKGR--TVIIIAHRLST-IRLADRIIVLDKGRIVEDGTH 693
|
....
gi 1759772862 227 KGIM 230
Cdd:COG2274 694 EELL 697
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
7-247 |
4.74e-35 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 126.41 E-value: 4.74e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFS-AAG----HVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKIL-ARQQPVSgGTVRFAGKALgdWGDREFARK 80
Cdd:TIGR04521 2 KLKNVSYIyQPGtpfeKKALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLnGLLKPTS-GTVTIDGRDI--TAKKKKKLK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 81 laylpqqtapaagmLVRELVALG-RYPWHG----------ALG--RFGATD---RQKVEEAIELTGIG-AFADRLVDTLS 143
Cdd:TIGR04521 79 --------------DLRKKVGLVfQFPEHQlfeetvykdiAFGpkNLGLSEeeaEERVKEALELVGLDeEYLERSPFELS 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 144 GGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQ 223
Cdd:TIGR04521 145 GGQMRRVAIAGVLAMEPEVLILDEPTAGLDPKGRKEILDLFKRLHKEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLD 224
|
250 260
....*....|....*....|....*...
gi 1759772862 224 STPKGI-MVPERLEEIY-GIP--MEVMQ 247
Cdd:TIGR04521 225 GTPREVfSDVDELEKIGlDVPeiTELAR 252
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
2-230 |
1.46e-34 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 130.27 E-value: 1.46e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 2 TSALFELENVTFS--AAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFAR 79
Cdd:COG4987 330 GGPSLELEDVSFRypGAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDDLRR 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 80 KLAYLPQQTAPAAGMlVRELVALGRyPwhgalgrfGATDRQkVEEAIELTGIGAFADRLVD-----------TLSGGERQ 148
Cdd:COG4987 410 RIAVVPQRPHLFDTT-LRENLRLAR-P--------DATDEE-LWAALERVGLGDWLAALPDgldtwlgeggrRLSGGERR 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 149 RVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKdlSVFVVLHDVNMAARFcDEVFALHSGRLIAQSTPKG 228
Cdd:COG4987 479 RLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALAGR--TVLLITHRLAGLERM-DRILVLEDGRIVEQGTHEE 555
|
..
gi 1759772862 229 IM 230
Cdd:COG4987 556 LL 557
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
7-240 |
5.15e-34 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 122.79 E-value: 5.15e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFS-AAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYLP 85
Cdd:cd03295 2 EFENVTKRyGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 86 QQTAPAAGMLVRELVALgrYPwhGALGRFGATDRQKVEEAIELTGI--GAFADRLVDTLSGGERQRVWLAMLVAQDAECL 163
Cdd:cd03295 82 QQIGLFPHMTVEENIAL--VP--KLLKWPKEKIRERADELLALVGLdpAEFADRYPHELSGGQQQRVGVARALAADPPLL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 164 LLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIM---VPERLEEIYG 240
Cdd:cd03295 158 LMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILrspANDFVAEFVG 237
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
7-242 |
2.66e-33 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 120.91 E-value: 2.66e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREfaRKLAYLPQ 86
Cdd:cd03296 4 EVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE--RNVGFVFQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 QTAPAAGMLVRELVALGRYPWHGALGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLD 166
Cdd:cd03296 82 HYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLD 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1759772862 167 EPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPkgimvperlEEIYGIP 242
Cdd:cd03296 162 EPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTP---------DEVYDHP 228
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
1-238 |
7.32e-33 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 120.89 E-value: 7.32e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 1 MTSALFELENVTFS--AAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGD---WGDR 75
Cdd:PRK13635 1 MKEEIIRVEHISFRypDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEetvWDVR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 76 efaRKLAYLPQQtaPA---AGMLVRELVAlgrypwhgalgrFGATDRQ--------KVEEAIELTGIGAFADRLVDTLSG 144
Cdd:PRK13635 81 ---RQVGMVFQN--PDnqfVGATVQDDVA------------FGLENIGvpreemveRVDQALRQVGMEDFLNREPHRLSG 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 145 GERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARfCDEVFALHSGRLIAQS 224
Cdd:PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEG 222
|
250
....*....|....*
gi 1759772862 225 TPKGIM-VPERLEEI 238
Cdd:PRK13635 223 TPEEIFkSGHMLQEI 237
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
7-221 |
3.25e-32 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 117.46 E-value: 3.25e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFS-AAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFA---RKLA 82
Cdd:COG2884 3 RFENVSKRyPGGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREIPylrRRIG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 83 Y-------LPQQTapaagmlVRELVALgrypwhgAL---GRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWL 152
Cdd:COG2884 83 VvfqdfrlLPDRT-------VYENVAL-------PLrvtGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAI 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1759772862 153 AMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLsHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLI 221
Cdd:COG2884 149 ARALVNRPELLLADEPTGNLDPETSWEIMELLEEI-NRRGTTVLIATHDLELVDRMPKRVLELEDGRLV 216
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
7-226 |
5.30e-32 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 123.35 E-value: 5.30e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFS-AAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYLP 85
Cdd:COG1132 341 EFENVSFSyPGDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDLTLESLRRQIGVVP 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 86 QQTapaagML----VRELValgrypwhgALGRFGATDrQKVEEAIELTGIGAFADRLVD-----------TLSGGERQRV 150
Cdd:COG1132 421 QDT-----FLfsgtIRENI---------RYGRPDATD-EEVEEAAKAAQAHEFIEALPDgydtvvgergvNLSGGQRQRI 485
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1759772862 151 WLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKdlSVFVVLHDVNmAARFCDEVFALHSGRLIAQSTP 226
Cdd:COG1132 486 AIARALLKDPPILILDEATSALDTETEALIQEALERLMKGR--TTIVIAHRLS-TIRNADRILVLDDGRIVEQGTH 558
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
7-229 |
1.59e-31 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 118.71 E-value: 1.59e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILA-RQQPvSGGTVRFAGKALGDWGD-REfaRKLAYL 84
Cdd:COG1118 4 EVRNISKRFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAgLETP-DSGRIVLNGRDLFTNLPpRE--RRVGFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 85 PQQTA--PAagMLVRELVALG-RypwhgALGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAE 161
Cdd:COG1118 81 FQHYAlfPH--MTVAENIAFGlR-----VRPPSKAEIRARVEELLELVQLEGLADRYPSQLSGGQRQRVALARALAVEPE 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1759772862 162 CLLLDEPTSALDI--AHQIEvlSLVRKLSHEKDL-SVFVVlHDVNMAARFCDEVFALHSGRLIAQSTPKGI 229
Cdd:COG1118 154 VLLLDEPFGALDAkvRKELR--RWLRRLHDELGGtTVFVT-HDQEEALELADRVVVMNQGRIEQVGTPDEV 221
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
21-227 |
3.22e-31 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 114.84 E-value: 3.22e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 21 LQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARK-LAYLPQQTAPAAGMLVREL 99
Cdd:cd03224 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAgIGYVPEGRRIFPELTVEEN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 100 VALGRYPwhgalgRFGATDRQKVEEAIEL-TGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALdiAHQI 178
Cdd:cd03224 96 LLLGAYA------RRRAKRKARLERVYELfPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL--APKI 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1759772862 179 --EVLSLVRKLsHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPK 227
Cdd:cd03224 168 veEIFEAIREL-RDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAA 217
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
31-224 |
4.43e-31 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 114.31 E-value: 4.43e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 31 GSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREF----ARKLAYLPQQTAPAAGMLVRELVAlgryp 106
Cdd:cd03297 23 EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINlppqQRKIGLVFQQYALFPHLNVRENLA----- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 107 wHGALGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRK 186
Cdd:cd03297 98 -FGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQ 176
|
170 180 190
....*....|....*....|....*....|....*...
gi 1759772862 187 LSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQS 224
Cdd:cd03297 177 IKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
5-221 |
7.21e-31 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 119.40 E-value: 7.21e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 5 LFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFaGKALgdwgdrefarKLAYL 84
Cdd:COG0488 315 VLELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKL-GETV----------KIGYF 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 85 PQ-QTAPAAGMLVRELVA-----LGRYPWHGALGRFGATdrqkveeaieltgiGAFADRLVDTLSGGERQRVWLAMLVAQ 158
Cdd:COG0488 384 DQhQEELDPDKTVLDELRdgapgGTEQEVRGYLGRFLFS--------------GDDAFKPVGVLSGGEKARLALAKLLLS 449
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1759772862 159 DAECLLLDEPTSALDIAhQIEVLslvrklshEKDL-----SVFVVLHDVNMAARFCDEVFALHSGRLI 221
Cdd:COG0488 450 PPNVLLLDEPTNHLDIE-TLEAL--------EEALddfpgTVLLVSHDRYFLDRVATRILEFEDGGVR 508
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
27-226 |
1.53e-30 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 116.35 E-value: 1.53e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 27 SIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREF----ARKLAYLPQQTAPAAGMLVRELVAL 102
Cdd:COG4148 21 TLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEVLQDSARGIFlpphRRRIGYVFQEARLFPHLSVRGNLLY 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 103 GRypWHGALGRfgatDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLS 182
Cdd:COG4148 101 GR--KRAPRAE----RRISFDEVVELLGIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLARKAEILP 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1759772862 183 LVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTP 226
Cdd:COG4148 175 YLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPL 218
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
12-227 |
2.14e-30 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 112.98 E-value: 2.14e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 12 TFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDwgDREFARK-LAYLPQQTAP 90
Cdd:cd03263 9 TYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT--DRKAARQsLGYCPQFDAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 91 AAGMLVRELVALgrypwHGAL-GRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPT 169
Cdd:cd03263 87 FDELTVREHLRF-----YARLkGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPT 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1759772862 170 SALDIAHQIEVLSLVRKLSHEKdlSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPK 227
Cdd:cd03263 162 SGLDPASRRAIWDLILEVRKGR--SIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQ 217
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
17-210 |
2.90e-30 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 113.82 E-value: 2.90e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 17 GHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILArqqpvsgGTVRFAG---KALGDWGDREFARKL-AYLPQ--QTAP 90
Cdd:PRK15056 19 GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALM-------GFVRLASgkiSILGQPTRQALQKNLvAYVPQseEVDW 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 91 AAGMLVRELVALGRYPWHGALGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTS 170
Cdd:PRK15056 92 SFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFT 171
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1759772862 171 ALDIAHQIEVLSLVRKLSHEKDlSVFVVLHDVNMAARFCD 210
Cdd:PRK15056 172 GVDVKTEARIISLLRELRDEGK-TMLVSTHNLGSVTEFCD 210
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
7-215 |
2.95e-30 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 118.16 E-value: 2.95e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGH-VLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYLP 85
Cdd:TIGR02857 323 EFSGVSVAYPGRrPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVP 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 86 QQTAPAAGMLVRELvalgrypwhgALGRFGATDRQkVEEAIELTGIGAFADRL---VDT--------LSGGERQRVWLAM 154
Cdd:TIGR02857 403 QHPFLFAGTIAENI----------RLARPDASDAE-IREALERAGLDEFVAALpqgLDTpigeggagLSGGQAQRLALAR 471
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1759772862 155 LVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKdlSVFVVLHDVNMAARfCDEVFAL 215
Cdd:TIGR02857 472 AFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGR--TVLLVTHRLALAAL-ADRIVVL 529
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
7-225 |
4.48e-30 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 112.29 E-value: 4.48e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVT--FSAAG--HVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGD---REFAR 79
Cdd:cd03258 3 ELKNVSkvFGDTGgkVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGkelRKARR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 80 KLAYLPQQTAPAAGMLVRELVAlgrYPWHGAlGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQD 159
Cdd:cd03258 83 RIGMIFQHFNLLSSRTVFENVA---LPLEIA-GVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANN 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1759772862 160 AECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQST 225
Cdd:cd03258 159 PKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGT 224
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
7-218 |
8.04e-30 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 110.81 E-value: 8.04e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFS-AAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKalgDWGDREFARKLAYLP 85
Cdd:cd03226 1 RIENISFSyKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGK---PIKAKERRKSIGYVM 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 86 QQTAPAAGM-LVRELVALGRypwhgalgRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLL 164
Cdd:cd03226 78 QDVDYQLFTdSVREELLLGL--------KELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLI 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1759772862 165 LDEPTSALDIAHQIEVLSLVRKLShEKDLSVFVVLHDVNMAARFCDEVFALHSG 218
Cdd:cd03226 150 FDEPTSGLDYKNMERVGELIRELA-AQGKAVIVITHDYEFLAKVCDRVLLLANG 202
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
7-223 |
8.28e-30 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 111.05 E-value: 8.28e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAaGHvllQPLTMS--IPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKalgDWGDREFA-RKLAY 83
Cdd:cd03298 2 RLDKIRFSY-GE---QPMHFDltFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGV---DVTAAPPAdRPVSM 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 84 LPQQTAPAAGMLVRELVALGRYPwhgALgRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECL 163
Cdd:cd03298 75 LFQENNLFAHLTVEQNVGLGLSP---GL-KLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVL 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 164 LLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQ 223
Cdd:cd03298 151 LLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQ 210
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
7-219 |
2.63e-29 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 109.65 E-value: 2.63e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVL-LQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFA---RKLA 82
Cdd:TIGR02673 3 EFHNVSKAYPGGVAaLHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPllrRRIG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 83 YLPQQTAPAAGMLVRELVALgryPWHgALGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAEC 162
Cdd:TIGR02673 83 VVFQDFRLLPDRTVYENVAL---PLE-VRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPL 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1759772862 163 LLLDEPTSALDIAHQIEVLSLVRKLsHEKDLSVFVVLHDVNMAARFCDEVFALHSGR 219
Cdd:TIGR02673 159 LLADEPTGNLDPDLSERILDLLKRL-NKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
7-223 |
5.67e-29 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 108.91 E-value: 5.67e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDwgdrEFARKLAYLPQ 86
Cdd:cd03269 2 EVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGYLPE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 QTAPAAGMLVRE-LVALGRYpwHGaLGRFGAtdRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLL 165
Cdd:cd03269 78 ERGLYPKMKVIDqLVYLAQL--KG-LKKEEA--RRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLIL 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1759772862 166 DEPTSALDIAHQIEVLSLVRKLShEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQ 223
Cdd:cd03269 153 DEPFSGLDPVNVELLKDVIRELA-RAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
8-224 |
6.11e-29 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 108.80 E-value: 6.11e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 8 LENVTFSAagHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGdwGDREFARKLAYLPQQ 87
Cdd:TIGR01277 3 LDKVRYEY--EHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHT--GLAPYQRPVSMLFQE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 88 TAPAAGMLVRELVALGRYPwhgALgRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDE 167
Cdd:TIGR01277 79 NNLFAHLTVRQNIGLGLHP---GL-KLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDE 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1759772862 168 PTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQS 224
Cdd:TIGR01277 155 PFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
6-241 |
1.24e-28 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 108.58 E-value: 1.24e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 6 FELENVTFSaaghvllqpltmsIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREfaRKLAYLP 85
Cdd:cd03299 13 FKLKNVSLE-------------VERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEK--RDISYVP 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 86 QQTAPAAGMLVRELVALG----RYPwhgalgrfGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAE 161
Cdd:cd03299 78 QNYALFPHMTVYKNIAYGlkkrKVD--------KKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPK 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 162 CLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIM---VPERLEEI 238
Cdd:cd03299 150 ILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFkkpKNEFVAEF 229
|
...
gi 1759772862 239 YGI 241
Cdd:cd03299 230 LGF 232
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
8-174 |
4.63e-28 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 111.70 E-value: 4.63e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 8 LENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKAlgdwgdrefarKLAYLPQQ 87
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPKGL-----------RIGYLPQE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 88 TAPAAGMLVRELVALGRYPWHGALGRFGATDRQ------------KVEEAIE--------------LTGIG---AFADRL 138
Cdd:COG0488 70 PPLDDDLTVLDTVLDGDAELRALEAELEELEAKlaepdedlerlaELQEEFEalggweaearaeeiLSGLGfpeEDLDRP 149
|
170 180 190
....*....|....*....|....*....|....*.
gi 1759772862 139 VDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDI 174
Cdd:COG0488 150 VSELSGGWRRRVALARALLSEPDLLLLDEPTNHLDL 185
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
7-220 |
5.10e-28 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 106.57 E-value: 5.10e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREfaRKLAYLPQ 86
Cdd:cd03301 2 ELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD--RDIAMVFQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 QTAPAAGMLVRELVALG----RYPwhgalgrfGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAEC 162
Cdd:cd03301 80 NYALYPHMTVYDNIAFGlklrKVP--------KDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKV 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1759772862 163 LLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRL 220
Cdd:cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
1-238 |
6.81e-28 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 107.96 E-value: 6.81e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 1 MTSALFELENVTFSA--AGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKI-----LARQQPVSGGTVrfAGKALGD-- 71
Cdd:PRK13640 1 MKDNIVEFKHVSFTYpdSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLingllLPDDNPNSKITV--DGITLTAkt 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 72 -WGDREfarKLAYLPQQTAPA-AGMLVRELVAlgrypwhgalgrFGATDRQK--------VEEAIELTGIGAFADRLVDT 141
Cdd:PRK13640 79 vWDIRE---KVGIVFQNPDNQfVGATVGDDVA------------FGLENRAVprpemikiVRDVLADVGMLDYIDSEPAN 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 142 LSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARfCDEVFALHSGRLI 221
Cdd:PRK13640 144 LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANM-ADQVLVLDDGKLL 222
|
250
....*....|....*...
gi 1759772862 222 AQSTPKGIMV-PERLEEI 238
Cdd:PRK13640 223 AQGSPVEIFSkVEMLKEI 240
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
7-230 |
8.08e-28 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 106.55 E-value: 8.08e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHV-LLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYLP 85
Cdd:cd03253 2 EFENVTFAYDPGRpVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 86 QQTapaagMLVRELVALG-RYpwhgalGRFGATDRQkVEEAIELTGIGAFADRL---VDT--------LSGGERQRVWLA 153
Cdd:cd03253 82 QDT-----VLFNDTIGYNiRY------GRPDATDEE-VIEAAKAAQIHDKIMRFpdgYDTivgerglkLSGGEKQRVAIA 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1759772862 154 MLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSheKDLSVFVVLHDVNMAARfCDEVFALHSGRLIAQSTPKGIM 230
Cdd:cd03253 150 RAILKNPPILLLDEATSALDTHTEREIQAALRDVS--KGRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEELL 223
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
27-245 |
9.79e-28 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 107.41 E-value: 9.79e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 27 SIPVGSLTALIGHNGSGKSTLLKIL-ARQQPVSGgTVRFagkalgdwGDREFA-----RKLAYLPQQTapaaGMLVRelv 100
Cdd:PRK13634 29 SIPSGSYVAIIGHTGSGKSTLLQHLnGLLQPTSG-TVTI--------GERVITagkknKKLKPLRKKV----GIVFQ--- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 101 algrYPWHG----------ALG--RFGATD---RQKVEEAIELTGIG-AFADRLVDTLSGGERQRVWLAMLVAQDAECLL 164
Cdd:PRK13634 93 ----FPEHQlfeetvekdiCFGpmNFGVSEedaKQKAREMIELVGLPeELLARSPFELSGGQMRRVAIAGVLAMEPEVLV 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 165 LDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMV-PERLEEI-YGIP 242
Cdd:PRK13634 169 LDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFAdPDELEAIgLDLP 248
|
...
gi 1759772862 243 MEV 245
Cdd:PRK13634 249 ETV 251
|
|
| L_ocin_972_ABC |
TIGR03608 |
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly ... |
8-212 |
1.34e-27 |
|
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 188353 [Multi-domain] Cd Length: 206 Bit Score: 105.00 E-value: 1.34e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 8 LENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGK---ALGDWGDREFAR-KLAY 83
Cdd:TIGR03608 1 LKNISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQetpPLNSKKASKFRReKLGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 84 LPQQTAPAAGMLVRELVALGRypwhgALGRFGATD-RQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAEC 162
Cdd:TIGR03608 81 LFQNFALIENETVEENLDLGL-----KYKKLSKKEkREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPL 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1759772862 163 LLLDEPTSALDIAHQIEVLSLVRKLShEKDLSVFVVLHDVNMAARfCDEV 212
Cdd:TIGR03608 156 ILADEPTGSLDPKNRDEVLDLLLELN-DEGKTIIIVTHDPEVAKQ-ADRV 203
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
7-229 |
1.58e-27 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 105.78 E-value: 1.58e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREfaRKLAYLPQ 86
Cdd:cd03300 2 ELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHK--RPVNTVFQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 QTAPAAGMLVRELVALGrypwhgaL---GRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECL 163
Cdd:cd03300 80 NYALFPHLTVFENIAFG-------LrlkKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVL 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1759772862 164 LLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGI 229
Cdd:cd03300 153 LLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
7-239 |
2.76e-27 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 107.47 E-value: 2.76e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREfaRKLAYLPQ 86
Cdd:COG3839 5 ELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLPPKD--RNIAMVFQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 QTA--PAagMLVRELVALG----RYPwhgalgrfGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDA 160
Cdd:COG3839 83 SYAlyPH--MTVYENIAFPlklrKVP--------KAEIDRRVREAAELLGLEDLLDRKPKQLSGGQRQRVALGRALVREP 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1759772862 161 ECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPkgimvperlEEIY 239
Cdd:COG3839 153 KVFLLDEPLSNLDAKLRVEMRAEIKRLHRRLGTTTIYVTHDQVEAMTLADRIAVMNDGRIQQVGTP---------EELY 222
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
18-220 |
3.20e-27 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 105.48 E-value: 3.20e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 18 HVLLQPLTMSIPVGSLTALIGHNGSGKSTLLK-----ILARQQPVS-----GGTVRFAGKALGDWgdREFARKLAYLPQQ 87
Cdd:PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRhlsglITGDKSAGShiellGRTVQREGRLARDI--RKSRANTGYIFQQ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 88 TAPAAGMLVRELV---ALGRYP-WHGALGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECL 163
Cdd:PRK09984 95 FNLVNRLSVLENVligALGSTPfWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVI 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1759772862 164 LLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRL 220
Cdd:PRK09984 175 LADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHV 231
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
6-223 |
3.30e-27 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 104.59 E-value: 3.30e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 6 FELENVTFS--AAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAY 83
Cdd:cd03245 3 IEFRNVSFSypNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 84 LPQQTAPAAGMLvRELVALGRYPwhgalgrfgATDrQKVEEAIELTGIGAFA-------DRLV----DTLSGGERQRVWL 152
Cdd:cd03245 83 VPQDVTLFYGTL-RDNITLGAPL---------ADD-ERILRAAELAGVTDFVnkhpnglDLQIgergRGLSGGQRQAVAL 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1759772862 153 AMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKdlSVFVVLHDVNMAArFCDEVFALHSGRLIAQ 223
Cdd:cd03245 152 ARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDK--TLIIITHRPSLLD-LVDRIIVMDSGRIVAD 219
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
1-227 |
3.99e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 105.70 E-value: 3.99e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 1 MTSALFELENVTFS-AAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALgdwgdrEFAR 79
Cdd:PRK13636 1 MEDYILKVEELNYNySDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPI------DYSR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 80 K-LAYLPQqtapAAGMLVR----ELVALGRYP--WHGALGRFGATD--RQKVEEAIELTGIGAFADRLVDTLSGGERQRV 150
Cdd:PRK13636 75 KgLMKLRE----SVGMVFQdpdnQLFSASVYQdvSFGAVNLKLPEDevRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRV 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1759772862 151 WLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPK 227
Cdd:PRK13636 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPK 227
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
7-229 |
8.23e-27 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 106.32 E-value: 8.23e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREfaRKLAYLPQ 86
Cdd:PRK10851 4 EIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD--RKVGFVFQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 QTAPAAGMLVRELVALGR--YPWHGALGRfgATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLL 164
Cdd:PRK10851 82 HYALFRHMTVFDNIAFGLtvLPRRERPNA--AAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1759772862 165 LDEPTSALDIAHQIEVLSLVRKLSHE-KDLSVFVVlHDVNMAARFCDEVFALHSGRLIAQSTPKGI 229
Cdd:PRK10851 160 LDEPFGALDAQVRKELRRWLRQLHEElKFTSVFVT-HDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
3-239 |
3.25e-26 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 102.37 E-value: 3.25e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 3 SALFELENVTfsaAG----HVLlQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFA 78
Cdd:COG0410 1 MPMLEVENLH---AGyggiHVL-HGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRIA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 79 RK-LAYLPQQTAPAAGMLVRELVALGRYPwhgalGRFGATDRQKVEEAIELtgigaF------ADRLVDTLSGGERQRvw 151
Cdd:COG0410 77 RLgIGYVPEGRRIFPSLTVEENLLLGAYA-----RRDRAEVRADLERVYEL-----FprlkerRRQRAGTLSGGEQQM-- 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 152 LAM---LVAqDAECLLLDEPTsaLDIAHQI--EVLSLVRKLsHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTP 226
Cdd:COG0410 145 LAIgraLMS-RPKLLLLDEPS--LGLAPLIveEIFEIIRRL-NREGVTILLVEQNARFALEIADRAYVLERGRIVLEGTA 220
|
250
....*....|...
gi 1759772862 227 KGIMVPERLEEIY 239
Cdd:COG0410 221 AELLADPEVREAY 233
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
28-230 |
4.12e-26 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 104.42 E-value: 4.12e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 28 IPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREF----ARKLAYLPQQTAPAAGMLVRELVALG 103
Cdd:TIGR02142 20 LPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFlppeKRRIGYVFQEARLFPHLSVRGNLRYG 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 104 RYpwhgalgRFGATDRQKVEEAI-ELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLS 182
Cdd:TIGR02142 100 MK-------RARPSERRISFERViELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILP 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1759772862 183 LVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIM 230
Cdd:TIGR02142 173 YLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220
|
|
| anch_rpt_ABC |
TIGR03771 |
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ... |
26-241 |
4.55e-26 |
|
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 163483 [Multi-domain] Cd Length: 223 Bit Score: 101.47 E-value: 4.55e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 26 MSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKAlgdwgDREFARKLAYLPQQTAPAAG--MLVRELVALG 103
Cdd:TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGAS-----PGKGWRHIGYVPQRHEFAWDfpISVAHTVMSG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 104 RYPWHGALGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSL 183
Cdd:TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTEL 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1759772862 184 VRKLSHEkDLSVFVVLHDVNMAARFCDEVfALHSGRLIAQSTPKGIMVPERLEEIYGI 241
Cdd:TIGR03771 156 FIELAGA-GTAILMTTHDLAQAMATCDRV-VLLNGRVIADGTPQQLQDPAPWMTTFGV 211
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
7-220 |
4.61e-26 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 101.33 E-value: 4.61e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVL-LQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFA---RKLA 82
Cdd:cd03292 2 EFINVTKTYPNGTAaLDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPylrRKIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 83 -------YLPQQTAPAAGMLVRELVALGRYPWhgalgrfgatdRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAML 155
Cdd:cd03292 82 vvfqdfrLLPDRNVYENVAFALEVTGVPPREI-----------RKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1759772862 156 VAQDAECLLLDEPTSALDIAHQIEVLSLVRKlSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRL 220
Cdd:cd03292 151 IVNSPTILIADEPTGNLDPDTTWEIMNLLKK-INKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
7-237 |
7.81e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 102.12 E-value: 7.81e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFS-AAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYLP 85
Cdd:PRK13647 6 EVEDLHFRyKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVF 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 86 QQTAPAA-GMLVRELVALGryPWHGALGRFGATDRqkVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLL 164
Cdd:PRK13647 86 QDPDDQVfSSTVWDDVAFG--PVNMGLDKDEVERR--VEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIV 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1759772862 165 LDEPTSALDIAHQIEVLSLVRKLsHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMVPERLEE 237
Cdd:PRK13647 162 LDEPMAYLDPRGQETLMEILDRL-HNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDEDIVEQ 233
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
7-222 |
2.08e-25 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 104.44 E-value: 2.08e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAG--HVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYL 84
Cdd:COG4618 332 SVENLTVVPPGskRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQWDREELGRHIGYL 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 85 PQQTAPAAGMlVRELVAlgrypwhgalgRFGATDRQKVEEAIELTGIGAFADRLVD-----------TLSGGERQRVWLA 153
Cdd:COG4618 412 PQDVELFDGT-IAENIA-----------RFGDADPEKVVAAAKLAGVHEMILRLPDgydtrigeggaRLSGGQRQRIGLA 479
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1759772862 154 MLVAQDAECLLLDEPTSALDiaHQIEVlSLVRKLSHEKD--LSVFVVLHDVNmAARFCDEVFALHSGRLIA 222
Cdd:COG4618 480 RALYGDPRLVVLDEPNSNLD--DEGEA-ALAAAIRALKArgATVVVITHRPS-LLAAVDKLLVLRDGRVQA 546
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
3-238 |
2.28e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 100.84 E-value: 2.28e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 3 SALFELENVTFSAAGHV--LLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARK 80
Cdd:PRK13632 5 SVMIKVENVSFSYPNSEnnALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 81 LAYLPQQtaPA---AGMLVRELVAlgrypwhgalgrFGATDR--------QKVEEAIELTGIGAFADRLVDTLSGGERQR 149
Cdd:PRK13632 85 IGIIFQN--PDnqfIGATVEDDIA------------FGLENKkvppkkmkDIIDDLAKKVGMEDYLDKEPQNLSGGQKQR 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 150 VWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARfCDEVFALHSGRLIAQSTPKGI 229
Cdd:PRK13632 151 VAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAIL-ADKVIVFSEGKLIAQGKPKEI 229
|
....*....
gi 1759772862 230 MVPERLEEI 238
Cdd:PRK13632 230 LNNKEILEK 238
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
7-227 |
2.39e-25 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 100.07 E-value: 2.39e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGdrefaRKLAYLPQ 86
Cdd:COG1126 3 EIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTDSK-----KDINKLRR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 QTapaaGML-----------VRELVALGryPWHgALGRfgatDRQKVEE-AIEL---TGIGAFADRLVDTLSGGERQRVW 151
Cdd:COG1126 78 KV----GMVfqqfnlfphltVLENVTLA--PIK-VKKM----SKAEAEErAMELlerVGLADKADAYPAQLSGGQQQRVA 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 152 ----LAMlvaqDAECLLLDEPTSALD---IAhqiEVLSLVRKLSHEKdLSVFVVLHDVNMAARFCDEVFALHSGRLIAQS 224
Cdd:COG1126 147 iaraLAM----EPKVMLFDEPTSALDpelVG---EVLDVMRDLAKEG-MTMVVVTHEMGFAREVADRVVFMDGGRIVEEG 218
|
...
gi 1759772862 225 TPK 227
Cdd:COG1126 219 PPE 221
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
2-239 |
2.93e-25 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 103.56 E-value: 2.93e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 2 TSALFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREfARKL 81
Cdd:COG1129 1 AEPLLEMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSPRD-AQAA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 82 --AYLPQQTAPAAGMLVRELVALGRYPwhgalGRFGATD----RQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAML 155
Cdd:COG1129 80 giAIIHQELNLVPNLSVAENIFLGREP-----RRGGLIDwramRRRARELLARLGLDIDPDTPVGDLSVAQQQLVEIARA 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 156 VAQDAECLLLDEPTSALDiAHQIEVL-SLVRKLShEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGI----- 229
Cdd:COG1129 155 LSRDARVLILDEPTASLT-EREVERLfRIIRRLK-AQGVAIIYISHRLDEVFEIADRVTVLRDGRLVGTGPVAELtedel 232
|
250
....*....|...
gi 1759772862 230 ---MVPERLEEIY 239
Cdd:COG1129 233 vrlMVGRELEDLF 245
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
27-201 |
3.20e-25 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 104.10 E-value: 3.20e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 27 SIPV---GSLTALIGHNGSGKSTLLKILARQ---------QPVSGGTV--RFAGKALGDWgdreFAR------KLAYLPQ 86
Cdd:COG1245 92 GLPVpkkGKVTGILGPNGIGKSTALKILSGElkpnlgdydEEPSWDEVlkRFRGTELQDY----FKKlangeiKVAHKPQ 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 QTAPAAGML---VRELVAlgrypwhgalgrfGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECL 163
Cdd:COG1245 168 YVDLIPKVFkgtVRELLE-------------KVDERGKLDELAEKLGLENILDRDISELSGGELQRVAIAAALLRDADFY 234
|
170 180 190
....*....|....*....|....*....|....*...
gi 1759772862 164 LLDEPTSALDIAHQIEVLSLVRKLShEKDLSVFVVLHD 201
Cdd:COG1245 235 FFDEPSSYLDIYQRLNVARLIRELA-EEGKYVLVVEHD 271
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
6-220 |
3.48e-25 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 98.76 E-value: 3.48e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 6 FELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGD--REFARKLAY 83
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKniNELRQKVGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 84 LPQQTAPAAGMLVRELVALGRYPwhgALGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECL 163
Cdd:cd03262 81 VFQQFNLFPHLTVLENITLAPIK---VKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVM 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1759772862 164 LLDEPTSALDIAHQIEVLSLVRKLSHEKdLSVFVVLHDVNMAARFCDEVFALHSGRL 220
Cdd:cd03262 158 LFDEPTSALDPELVGEVLDVMKDLAEEG-MTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
1-226 |
4.24e-25 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 99.05 E-value: 4.24e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 1 MTSALFELENVTFS---AAGHV-LLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDRE 76
Cdd:COG4181 4 SSAPIIELRGLTKTvgtGAGELtILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFALDEDA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 77 FARKLA-----------YLPQQTApaagmlvRELVALgryPwhgaLGRFGATD-RQKVEEAIELTGIGAFADRLVDTLSG 144
Cdd:COG4181 84 RARLRArhvgfvfqsfqLLPTLTA-------LENVML---P----LELAGRRDaRARARALLERVGLGHRLDHYPAQLSG 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 145 GERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARfCDEVFALHSGRLIAQS 224
Cdd:COG4181 150 GEQQRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDPALAAR-CDRVLRLRAGRLVEDT 228
|
..
gi 1759772862 225 TP 226
Cdd:COG4181 229 AA 230
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
7-223 |
5.17e-25 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 101.31 E-value: 5.17e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENV--TFSAAG--HVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGK---ALGDWGDREFAR 79
Cdd:COG1135 3 ELENLskTFPTKGgpVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVdltALSERELRAARR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 80 KLAYLPQQ-------TapaagmlVRELVALgrypwhgAL---GRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQR 149
Cdd:COG1135 83 KIGMIFQHfnllssrT-------VAENVAL-------PLeiaGVPKAEIRKRVAELLELVGLSDKADAYPSQLSGGQKQR 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1759772862 150 VWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQ 223
Cdd:COG1135 149 VGIARALANNPKVLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVLENGRIVEQ 222
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
35-221 |
6.21e-25 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 100.51 E-value: 6.21e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 35 ALIGHNGSGKSTLLKILARQQP---VSGGTVRFAGKALGDWGDREF----ARKLAYLPQqtAPAA--------GMLVREL 99
Cdd:COG0444 35 GLVGESGSGKSTLARAILGLLPppgITSGEILFDGEDLLKLSEKELrkirGREIQMIFQ--DPMTslnpvmtvGDQIAEP 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 100 VALgrypwHGALGRfgATDRQKVEEAIELTGIGAFADRLVD---TLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAH 176
Cdd:COG0444 113 LRI-----HGGLSK--AEARERAIELLERVGLPDPERRLDRyphELSGGMRQRVMIARALALEPKLLIADEPTTALDVTI 185
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1759772862 177 QIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLI 221
Cdd:COG0444 186 QAQILNLLKDLQRELGLAILFITHDLGVVAEIADRVAVMYAGRIV 230
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
10-256 |
7.46e-25 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 99.79 E-value: 7.46e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 10 NVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILAR-QQPVSG----GTVRFAGKALGDWGD-REFARKLAY 83
Cdd:PRK14271 26 NLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRmNDKVSGyrysGDVLLGGRSIFNYRDvLEFRRRVGM 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 84 LPQQTAPAAGMLVRELVALGRYpwHGALGRfgaTDRQKVEEAiELTGIG---AFADRLVDT---LSGGERQRVWLAMLVA 157
Cdd:PRK14271 106 LFQRPNPFPMSIMDNVLAGVRA--HKLVPR---KEFRGVAQA-RLTEVGlwdAVKDRLSDSpfrLSGGQQQLLCLARTLA 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 158 QDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEkdLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPkgimvperlEE 237
Cdd:PRK14271 180 VNPEVLLLDEPTSALDPTTTEKIEEFIRSLADR--LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPT---------EQ 248
|
250
....*....|....*....
gi 1759772862 238 IYGIPmevmQHTSTGQLIA 256
Cdd:PRK14271 249 LFSSP----KHAETARYVA 263
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
6-223 |
8.74e-25 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 96.34 E-value: 8.74e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 6 FELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREfARKLaylp 85
Cdd:cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRD-ARRA---- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 86 qqtapaagmlvrelvalgrypwhgalgrfgatdrqkveeaieltGIGafadrLVDTLSGGERQRVWLAMLVAQDAECLLL 165
Cdd:cd03216 76 --------------------------------------------GIA-----MVYQLSVGERQMVEIARALARNARLLIL 106
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1759772862 166 DEPTSALDIAHQIEVLSLVRKLShEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQ 223
Cdd:cd03216 107 DEPTAALTPAEVERLFKVIRRLR-AQGVAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
36-230 |
1.62e-24 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 98.48 E-value: 1.62e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 36 LIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGD---REFARK--------LAYLPQQTapaagmlVRELVALGr 104
Cdd:cd03294 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRkelRELRRKkismvfqsFALLPHRT-------VLENVAFG- 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 105 ypwhgaL---GRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALD----IAHQ 177
Cdd:cd03294 127 ------LevqGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDplirREMQ 200
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1759772862 178 IEVLSLVRKLsheKDLSVFVVlHDVNMAARFCDEVFALHSGRLIAQSTPKGIM 230
Cdd:cd03294 201 DELLRLQAEL---QKTIVFIT-HDLDEALRLGDRIAIMKDGRLVQVGTPEEIL 249
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
6-220 |
1.85e-24 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 95.75 E-value: 1.85e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 6 FELENVTFSAAG--HVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAY 83
Cdd:cd03246 1 LEVENVSFRYPGaePPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 84 LPQQtapaagmlvrelvalgrypwhgalgrfgatdrqkveeaIELtgigaFADRLVDT-LSGGERQRVWLAMLVAQDAEC 162
Cdd:cd03246 81 LPQD--------------------------------------DEL-----FSGSIAENiLSGGQRQRLGLARALYGNPRI 117
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1759772862 163 LLLDEPTSALDIAHQIEVLSLVRKLShEKDLSVFVVLHDVNMAARfCDEVFALHSGRL 220
Cdd:cd03246 118 LVLDEPNSHLDVEGERALNQAIAALK-AAGATRIVIAHRPETLAS-ADRILVLEDGRV 173
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
7-225 |
1.91e-24 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 97.69 E-value: 1.91e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHV--LLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYL 84
Cdd:cd03251 2 EFKNVTFRYPGDGppVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 85 PQQTAPAAGMlVRELValgrypwhgALGRFGATDRQkVEEAIELTGIGAFADRL---VDT--------LSGGERQRVWLA 153
Cdd:cd03251 82 SQDVFLFNDT-VAENI---------AYGRPGATREE-VEEAARAANAHEFIMELpegYDTvigergvkLSGGQRQRIAIA 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1759772862 154 MLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSheKDLSVFVVLHDVNmAARFCDEVFALHSGRLIAQST 225
Cdd:cd03251 151 RALLKDPPILILDEATSALDTESERLVQAALERLM--KNRTTFVIAHRLS-TIENADRIVVLEDGKIVERGT 219
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
7-229 |
3.31e-24 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 98.26 E-value: 3.31e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALgdwgDREFARKLAYLPQ 86
Cdd:COG4152 3 ELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPL----DPEDRRRIGYLPE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 QTAPAAGMLVRE-LVALGRYpwHGaLGRfgATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLL 165
Cdd:COG4152 79 ERGLYPKMKVGEqLVYLARL--KG-LSK--AEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLIL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1759772862 166 DEPTSALD-IAHQIeVLSLVRKLsHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGI 229
Cdd:COG4152 154 DEPFSGLDpVNVEL-LKDVIREL-AAKGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEI 216
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
7-219 |
4.11e-24 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 94.05 E-value: 4.11e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKAlgdwgdrefarKLAYLPQ 86
Cdd:cd03221 2 ELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTV-----------KIGYFEQ 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 qtapaagmlvrelvalgrypwhgalgrfgatdrqkveeaieltgigafadrlvdtLSGGERQRVWLAMLVAQDAECLLLD 166
Cdd:cd03221 71 -------------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLD 95
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1759772862 167 EPTSALDIAHqieVLSLVRKLSHEKDlSVFVVLHDVNMAARFCDEVFALHSGR 219
Cdd:cd03221 96 EPTNHLDLES---IEALEEALKEYPG-TVILVSHDRYFLDQVATKIIELEDGK 144
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
25-212 |
4.53e-24 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 96.71 E-value: 4.53e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 25 TMSIPVGSLT-----ALIGHNGSGKSTLLKILA-RQQPvsggtvrfagkalgDWGDREFAR-KLAYLPQQTAPAAGMLVR 97
Cdd:cd03237 14 TLEVEGGSISeseviGILGPNGIGKTTFIKMLAgVLKP--------------DEGDIEIELdTVSYKPQYIKADYEGTVR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 98 ELValgrypwHGALGRFGaTDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQ 177
Cdd:cd03237 80 DLL-------SSITKDFY-THPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQR 151
|
170 180 190
....*....|....*....|....*....|....*
gi 1759772862 178 IEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEV 212
Cdd:cd03237 152 LMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRL 186
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
20-223 |
5.72e-24 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 97.18 E-value: 5.72e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 20 LLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDW---GDREFARKLAYLPQQTAPA--AGM 94
Cdd:TIGR02769 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLdrkQRRAFRRDVQLVFQDSPSAvnPRM 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 95 LVRELValgRYPWHGaLGRFGATDRQ-KVEEAIELTGIGA-FADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSAL 172
Cdd:TIGR02769 106 TVRQII---GEPLRH-LTSLDESEQKaRIAELLDMVGLRSeDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNL 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1759772862 173 DIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQ 223
Cdd:TIGR02769 182 DMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
1-227 |
6.76e-24 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 98.25 E-value: 6.76e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 1 MTSALF-ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKalgDWGDREFA- 78
Cdd:PRK11432 1 MTQKNFvVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGE---DVTHRSIQq 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 79 RKLAYLPQQTAPAAGMLVRELVALGRypwhGALGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQ 158
Cdd:PRK11432 78 RDICMVFQSYALFPHMSLGENVGYGL----KMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALIL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1759772862 159 DAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPK 227
Cdd:PRK11432 154 KPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQ 222
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
7-229 |
1.02e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 96.36 E-value: 1.02e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGH--VLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYL 84
Cdd:PRK13648 9 VFKNVSFQYQSDasFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 85 PQQTAPA-AGMLVRELVALGrypwhgaLGRFGA-TDR--QKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDA 160
Cdd:PRK13648 89 FQNPDNQfVGSIVKYDVAFG-------LENHAVpYDEmhRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNP 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1759772862 161 ECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARfCDEVFALHSGRLIAQSTPKGI 229
Cdd:PRK13648 162 SVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEI 229
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1-257 |
1.12e-23 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 99.39 E-value: 1.12e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 1 MTSALFELEN--VTFSAAGHV--LLQPLTMSIPVGSLTALIGHNGSGKS-TLLKI--LARQQPVS--GGTVRFAGKALGD 71
Cdd:PRK15134 1 MTQPLLAIENlsVAFRQQQTVrtVVNDVSLQIEAGETLALVGESGSGKSvTALSIlrLLPSPPVVypSGDIRFHGESLLH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 72 WGDREF----ARKLAYLPQQTAPAAGML------VRELVALgrypwHGALGRFGAtdRQKVEEAIELTGIGAFADRLVD- 140
Cdd:PRK15134 81 ASEQTLrgvrGNKIAMIFQEPMVSLNPLhtlekqLYEVLSL-----HRGMRREAA--RGEILNCLDRVGIRQAAKRLTDy 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 141 --TLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSG 218
Cdd:PRK15134 154 phQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNG 233
|
250 260 270
....*....|....*....|....*....|....*....
gi 1759772862 219 RLIAQStpkgimvpeRLEEIYGIPmevmQHTSTGQLIAS 257
Cdd:PRK15134 234 RCVEQN---------RAATLFSAP----THPYTQKLLNS 259
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
28-201 |
1.46e-23 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 99.11 E-value: 1.46e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 28 IPV-GSLTALIGHNGSGKSTLLKILARQ---------QPVSGGTV--RFAGKALGDWgdreFAR------KLAYLPQQTA 89
Cdd:PRK13409 95 IPKeGKVTGILGPNGIGKTTAVKILSGElipnlgdyeEEPSWDEVlkRFRGTELQNY----FKKlyngeiKVVHKPQYVD 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 90 PAAGML---VRELVAlgrypwhgalgrfGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLD 166
Cdd:PRK13409 171 LIPKVFkgkVRELLK-------------KVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFD 237
|
170 180 190
....*....|....*....|....*....|....*
gi 1759772862 167 EPTSALDIAHQIEVLSLVRKLSHEKdlSVFVVLHD 201
Cdd:PRK13409 238 EPTSYLDIRQRLNVARLIRELAEGK--YVLVVEHD 270
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
21-224 |
1.87e-23 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 95.09 E-value: 1.87e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 21 LQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGkaLGDWGDR-EFARKLAY-LPQQTAPAAGMLVRE 98
Cdd:cd03267 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG--LVPWKRRkKFLRRIGVvFGQKTQLWWDLPVID 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 99 LVALGRYPWHGALGRFgatdRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQI 178
Cdd:cd03267 115 SFYLLAAIYDLPPARF----KKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQE 190
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1759772862 179 EVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQS 224
Cdd:cd03267 191 NIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
8-207 |
2.01e-23 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 94.65 E-value: 2.01e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 8 LENVTFsaaghvLLQPLTM----SIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKalgDWGDREFA-RKLA 82
Cdd:PRK10771 4 LTDITW------LYHHLPMrfdlTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQ---DHTTTPPSrRPVS 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 83 YLPQQTAPAAGMLVRELVALGRYPwhgALgRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAEC 162
Cdd:PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNP---GL-KLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPI 150
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1759772862 163 LLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAAR 207
Cdd:PRK10771 151 LLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAAR 195
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
18-221 |
2.52e-23 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 95.52 E-value: 2.52e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 18 HVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALG--DWGDREFARKLAYLPQQTAPAAGML 95
Cdd:PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAklNRAQRKAFRRDIQMVFQDSISAVNP 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 96 VRELVALGRYPWHGALGRFGATDRQKVEEAIELTGIGA-FADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDI 174
Cdd:PRK10419 105 RKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDsVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDL 184
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1759772862 175 AHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLI 221
Cdd:PRK10419 185 VLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIV 231
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
6-203 |
2.63e-23 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 94.09 E-value: 2.63e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 6 FELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLK----ILARQQPVSGgTVRFAGKALGDwGDREfARKL 81
Cdd:COG4136 2 LSLENLTITLGGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAaiagTLSPAFSASG-EVLLNGRRLTA-LPAE-QRRI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 82 AYLPQQTAPAAGMLVRELVALGRYPwhgALGRfgATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLA-MLVAQDA 160
Cdd:COG4136 79 GILFQDDLLFPHLSVGENLAFALPP---TIGR--AQRRARVEQALEEAGLAGFADRDPATLSGGQRARVALLrALLAEPR 153
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1759772862 161 eCLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVN 203
Cdd:COG4136 154 -ALLLDEPFSKLDAALRAQFREFVFEQIRQRGIPALLVTHDEE 195
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
7-220 |
2.78e-23 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 98.19 E-value: 2.78e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAG--HVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYL 84
Cdd:TIGR01842 318 SVENVTIVPPGgkKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYL 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 85 PQQTAPAAGMlVRELVAlgrypwhgalgRFG-ATDRQKVEEAIELTGIGAFADRLVD-----------TLSGGERQRVWL 152
Cdd:TIGR01842 398 PQDVELFPGT-VAENIA-----------RFGeNADPEKIIEAAKLAGVHELILRLPDgydtvigpggaTLSGGQRQRIAL 465
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1759772862 153 AMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKdLSVFVVLHDVNMAArFCDEVFALHSGRL 220
Cdd:TIGR01842 466 ARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARG-ITVVVITHRPSLLG-CVDKILVLQDGRI 531
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
7-231 |
2.91e-23 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 94.21 E-value: 2.91e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFS-AAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYLP 85
Cdd:cd03254 4 EFENVNFSyDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 86 QQTAPAAGMlVRELVALGRYpwhgalgrfGATDrQKVEEAIELTGIGAFADRLVD-----------TLSGGERQRVWLAM 154
Cdd:cd03254 84 QDTFLFSGT-IMENIRLGRP---------NATD-EEVIEAAKEAGAHDFIMKLPNgydtvlgenggNLSQGERQLLAIAR 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1759772862 155 LVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKdlSVFVVLHDVNmAARFCDEVFALHSGRLIAQSTPKGIMV 231
Cdd:cd03254 153 AMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGR--TSIIIAHRLS-TIKNADKILVLDDGKIIEEGTHDELLA 226
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
6-221 |
3.07e-23 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 94.72 E-value: 3.07e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 6 FELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILAR------QQPVSGgTVRFAGKALGDWG-DR-EF 77
Cdd:COG1117 12 IEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRmndlipGARVEG-EILLDGEDIYDPDvDVvEL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 78 ARKLAYLPQQTAPAAgMLVRELVALGrypwhgaLGRFGATDRQKVEEAIE--LTGIGAF---ADRLVD---TLSGGERQR 149
Cdd:COG1117 91 RRRVGMVFQKPNPFP-KSIYDNVAYG-------LRLHGIKSKSELDEIVEesLRKAALWdevKDRLKKsalGLSGGQQQR 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1759772862 150 VWLAMLVAQDAECLLLDEPTSALD-IA-HQIEvlSLVRKLSheKDLSVFVVLHdvNM--AARFCDEVFALHSGRLI 221
Cdd:COG1117 163 LCIARALAVEPEVLLMDEPTSALDpIStAKIE--ELILELK--KDYTIVIVTH--NMqqAARVSDYTAFFYLGELV 232
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
21-227 |
5.10e-23 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 93.99 E-value: 5.10e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 21 LQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGK-----ALGdwgdrefarkLAYLPQQTApaagml 95
Cdd:COG1134 42 LKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVEVNGRvsallELG----------AGFHPELTG------ 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 96 vRELVALGrypwhGALgrFGATDRQ---KVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSAL 172
Cdd:COG1134 106 -RENIYLN-----GRL--LGLSRKEideKFDEIVEFAELGDFIDQPVKTYSSGMRARLAFAVATAVDPDILLVDEVLAVG 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1759772862 173 DIAHQIEVLSLVRKLShEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPK 227
Cdd:COG1134 178 DAAFQKKCLARIRELR-ESGRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDPE 231
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
24-222 |
5.50e-23 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 93.20 E-value: 5.50e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 24 LTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDwGDREFARKLAYLPQQTAPAAGMLVRELVA-L 102
Cdd:cd03266 24 VSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRLGFVSDSTGLYDRLTARENLEyF 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 103 GRYpwHGaLGRFGATDRqkVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLS 182
Cdd:cd03266 103 AGL--YG-LKGDELTAR--LEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALRE 177
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1759772862 183 LVRKLSHEKDLSVFVVlHDVNMAARFCDEVFALHSGRLIA 222
Cdd:cd03266 178 FIRQLRALGKCILFST-HIMQEVERLCDRVVVLHRGRVVY 216
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
6-239 |
6.18e-23 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 93.38 E-value: 6.18e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 6 FELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARK-LAYL 84
Cdd:cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLgIGYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 85 PQQTAPAAGMLVRELVALgrypwhgALGRFGATD---RQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAE 161
Cdd:cd03218 81 PQEASIFRKLTVEENILA-------VLEIRGLSKkerEEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPK 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1759772862 162 CLLLDEPTSALD-IAHQiEVLSLVRKLShEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMVPERLEEIY 239
Cdd:cd03218 154 FLLLDEPFAGVDpIAVQ-DIQKIIKILK-DRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANELVRKVY 230
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
7-175 |
6.92e-23 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 92.42 E-value: 6.92e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDrEFARKLAYLPQ 86
Cdd:TIGR01189 2 AARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRD-EPHENILYLGH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 QTAPAAGMLVRELVALgrypWHgalgRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLD 166
Cdd:TIGR01189 81 LPGLKPELSALENLHF----WA----AIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILD 152
|
....*....
gi 1759772862 167 EPTSALDIA 175
Cdd:TIGR01189 153 EPTTALDKA 161
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
6-185 |
9.10e-23 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 92.24 E-value: 9.10e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 6 FELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGkalGDWGDREFARKLAYLP 85
Cdd:PRK13539 3 LEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDG---GDIDDPDVAEACHYLG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 86 QQTAPAAGMLVRELVALgrypWHGALGrfgaTDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLL 165
Cdd:PRK13539 80 HRNAMKPALTVAENLEF----WAAFLG----GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWIL 151
|
170 180
....*....|....*....|
gi 1759772862 166 DEPTSALDIAHQIEVLSLVR 185
Cdd:PRK13539 152 DEPTAALDAAAVALFAELIR 171
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
7-221 |
1.77e-22 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 92.84 E-value: 1.77e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENV--TFSAAG---HVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKL 81
Cdd:COG1101 3 ELKNLskTFNPGTvneKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYKRAKYI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 82 AYLPQQ----TAPaaGMLVRELVAL-----GRYPWHGALGRfgaTDRQKVEEAIELTGIGaFADRL---VDTLSGGERQR 149
Cdd:COG1101 83 GRVFQDpmmgTAP--SMTIEENLALayrrgKRRGLRRGLTK---KRRELFRELLATLGLG-LENRLdtkVGLLSGGQRQA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1759772862 150 VWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLI 221
Cdd:COG1101 157 LSLLMATLTKPKLLLLDEHTAALDPKTAALVLELTEKIVEENNLTTLMVTHNMEQALDYGNRLIMMHEGRII 228
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
7-223 |
2.37e-22 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 91.12 E-value: 2.37e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDwgDREFARKLAYLPQ 86
Cdd:cd03268 2 KTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK--NIEALRRIGALIE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 QTAPAAGMLVRE-LVALGRYpwhgaLGRfgatDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLL 165
Cdd:cd03268 80 APGFYPNLTAREnLRLLARL-----LGI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLIL 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1759772862 166 DEPTSALDIAHQIEVLSLVRKLShEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQ 223
Cdd:cd03268 151 DEPTNGLDPDGIKELRELILSLR-DQGITVLISSHLLSEIQKVADRIGIINKGKLIEE 207
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
14-202 |
3.45e-22 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 92.23 E-value: 3.45e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 14 SAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKAL-GDWGDREF-ARKLAYLPQQTapa 91
Cdd:COG4525 16 GGQPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVtGPGADRGVvFQKDALLPWLN--- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 92 agmlVRELVALGrypwhgaL---GRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEP 168
Cdd:COG4525 93 ----VLDNVAFG-------LrlrGVPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPRFLLMDEP 161
|
170 180 190
....*....|....*....|....*....|....
gi 1759772862 169 TSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDV 202
Cdd:COG4525 162 FGALDALTREQMQELLLDVWQRTGKGVFLITHSV 195
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
21-222 |
5.36e-22 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 90.67 E-value: 5.36e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 21 LQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKalgdwgdrefarkLAYLPqqtAPAAGML----V 96
Cdd:cd03220 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGR-------------VSSLL---GLGGGFNpeltG 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 97 RELVAL-GRYpwhgaLGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIA 175
Cdd:cd03220 102 RENIYLnGRL-----LGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAA 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1759772862 176 HQIEVLSLVRKLsHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIA 222
Cdd:cd03220 177 FQEKCQRRLREL-LKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
7-242 |
7.18e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 91.65 E-value: 7.18e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTF-----SAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLkilarqQPVSGGTVRFAGKALGDwgDREFARKL 81
Cdd:PRK13637 4 KIENLTHiymegTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLI------QHLNGLLKPTSGKIIID--GVDITDKK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 82 AYLPQqtapaagmlVRELVAL-GRYPWHG----------ALG--RFGATDRQ---KVEEAIELTGIG--AFADRLVDTLS 143
Cdd:PRK13637 76 VKLSD---------IRKKVGLvFQYPEYQlfeetiekdiAFGpiNLGLSEEEienRVKRAMNIVGLDyeDYKDKSPFELS 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 144 GGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQ 223
Cdd:PRK13637 147 GGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQ 226
|
250 260
....*....|....*....|.
gi 1759772862 224 STPKGIMVP-ERLEEI-YGIP 242
Cdd:PRK13637 227 GTPREVFKEvETLESIgLAVP 247
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
20-236 |
1.05e-21 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 90.74 E-value: 1.05e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 20 LLQPLTMSIPVGSLTALIGHNGSGKSTLLKILAR-----QQPVSGGTVRFAGKALGDWGDREFARKLAYLPQQTAPAAGM 94
Cdd:PRK14247 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRlielyPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 95 LVRELVALGRypwhgALGRFGATDR---QKVEEAIELTGI-GAFADRL---VDTLSGGERQRVWLAMLVAQDAECLLLDE 167
Cdd:PRK14247 98 SIFENVALGL-----KLNRLVKSKKelqERVRWALEKAQLwDEVKDRLdapAGKLSGGQQQRLCIARALAFQPEVLLADE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1759772862 168 PTSALDIAHQIEVLSLVRKLshEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMVPERLE 236
Cdd:PRK14247 173 PTANLDPENTAKIESLFLEL--KKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPRHE 239
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-257 |
1.21e-21 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 93.60 E-value: 1.21e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 1 MTSALFELEN--VTFSAAGHV--LLQPLTMSIPVGSLTALIGHNGSGKS----TLLKILARQQPVSGGTVRFAGKALGDW 72
Cdd:COG4172 2 MSMPLLSVEDlsVAFGQGGGTveAVKGVSFDIAAGETLALVGESGSGKSvtalSILRLLPDPAAHPSGSILFDGQDLLGL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 73 GDREFAR----KLAYLPQQ--TA--PA--AGMLVRELVALgrypwHGALGRFGAtdRQKVEEAIELTGIGAFADRLVD-- 140
Cdd:COG4172 82 SERELRRirgnRIAMIFQEpmTSlnPLhtIGKQIAEVLRL-----HRGLSGAAA--RARALELLERVGIPDPERRLDAyp 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 141 -TLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGR 219
Cdd:COG4172 155 hQLSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHDLGVVRRFADRVAVMRQGE 234
|
250 260 270
....*....|....*....|....*....|....*...
gi 1759772862 220 LIAQSTpkgimvperLEEIYGIPmevmQHTSTGQLIAS 257
Cdd:COG4172 235 IVEQGP---------TAELFAAP----QHPYTRKLLAA 259
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
5-230 |
1.25e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 90.82 E-value: 1.25e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 5 LFELENVTFSAA-GHVLLQPLTMSIPVGSLTALIGHNGSGKSTL---LKILARQQpvsGGTVRFAGKALGDWGDREFARK 80
Cdd:PRK13644 1 MIRLENVSYSYPdGTPALENINLVIKKGEYIGIIGKNGSGKSTLalhLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 81 LAYLPQQTAPA--AGMLVRELVALGryPWHGALGRFGAtdRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQ 158
Cdd:PRK13644 78 LVGIVFQNPETqfVGRTVEEDLAFG--PENLCLPPIEI--RKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTM 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1759772862 159 DAECLLLDEPTSALDIAHQIEVLSLVRKLsHEKDLSVFVVLHDVNmAARFCDEVFALHSGRLIAQSTPKGIM 230
Cdd:PRK13644 154 EPECLIFDEVTSMLDPDSGIAVLERIKKL-HEKGKTIVYITHNLE-ELHDADRIIVMDRGKIVLEGEPENVL 223
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
31-201 |
1.36e-21 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 90.50 E-value: 1.36e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 31 GSLTALIGHNGSGKSTLLKILARQQ---------PVSGGTV--RFAGKALGDW------GDREFARKLAY---LPQQTAP 90
Cdd:cd03236 26 GQVLGLVGPNGIGKSTALKILAGKLkpnlgkfddPPDWDEIldEFRGSELQNYftklleGDVKVIVKPQYvdlIPKAVKG 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 91 AAGMLVRElvalgrypwhgalgrfgATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTS 170
Cdd:cd03236 106 KVGELLKK-----------------KDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSS 168
|
170 180 190
....*....|....*....|....*....|.
gi 1759772862 171 ALDIAHQIEVLSLVRKLShEKDLSVFVVLHD 201
Cdd:cd03236 169 YLDIKQRLNAARLIRELA-EDDNYVLVVEHD 198
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1-236 |
1.48e-21 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 90.22 E-value: 1.48e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 1 MTSALFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVS-----GGTVRFAGKALgdWGDR 75
Cdd:PRK14239 1 MTEPILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNpevtiTGSIVYNGHNI--YSPR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 76 ----EFARKLAYLPQQTAPAAgMLVRELVALGrypwhgaLGRFGATDRQKVEEAIELTGIGA-----FADRLVDT---LS 143
Cdd:PRK14239 79 tdtvDLRKEIGMVFQQPNPFP-MSIYENVVYG-------LRLKGIKDKQVLDEAVEKSLKGAsiwdeVKDRLHDSalgLS 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 144 GGERQRVWLAMLVAQDAECLLLDEPTSALD--IAHQIEVLSLVRKlsheKDLSVFVVLHDVNMAARFCDEVFALHSGRLI 221
Cdd:PRK14239 151 GGQQQRVCIARVLATSPKIILLDEPTSALDpiSAGKIEETLLGLK----DDYTMLLVTRSMQQASRISDRTGFFLDGDLI 226
|
250
....*....|....*.
gi 1759772862 222 AQSTPKGI-MVPERLE 236
Cdd:PRK14239 227 EYNDTKQMfMNPKHKE 242
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
21-218 |
1.49e-21 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 89.83 E-value: 1.49e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 21 LQPLTMSIPVGSLTALIGHNGSGKSTLLKILAR-QQPVSGGtVRFAGKALGDWG-DREFA-RKLAYLPQQTapaagmlVR 97
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGlAQPTSGG-VILEGKQITEPGpDRMVVfQNYSLLPWLT-------VR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 98 ELVALGRypwHGALGRFGATDRQK-VEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAH 176
Cdd:TIGR01184 73 ENIALAV---DRVLPDLSKSERRAiVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALT 149
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1759772862 177 QIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSG 218
Cdd:TIGR01184 150 RGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
3-249 |
1.49e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 90.92 E-value: 1.49e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 3 SALFELENVTF------SAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGD----W 72
Cdd:PRK13633 2 NEMIKCKNVSYkyesneESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDeenlW 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 73 GDREFARKLAYLPQQTAPAAgmLVRELVALGryPWHgaLGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWL 152
Cdd:PRK13633 82 DIRNKAGMVFQNPDNQIVAT--IVEEDVAFG--PEN--LGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAI 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 153 AMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARfCDEVFALHSGRLIAQSTPKGIMvp 232
Cdd:PRK13633 156 AGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIF-- 232
|
250
....*....|....*..
gi 1759772862 233 ERLEEIYGIPMEVMQHT 249
Cdd:PRK13633 233 KEVEMMKKIGLDVPQVT 249
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
3-220 |
1.57e-21 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 89.39 E-value: 1.57e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 3 SALFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLA 82
Cdd:PRK10247 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 83 YLpQQTAPAAGMLVRELVAlgrYPWHgalgrfgaTDRQKVEEAIELTGIGAFA------DRLVDTLSGGERQRVWLAMLV 156
Cdd:PRK10247 85 YC-AQTPTLFGDTVYDNLI---FPWQ--------IRNQQPDPAIFLDDLERFAlpdtilTKNIAELSGGEKQRISLIRNL 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1759772862 157 AQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARfCDEVFAL--HSGRL 220
Cdd:PRK10247 153 QFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINH-ADKVITLqpHAGEM 217
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
20-221 |
2.96e-21 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 88.87 E-value: 2.96e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 20 LLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSG---GTVRFAGKALgdwgDR-EFARKLAYLPQQTAPAAGML 95
Cdd:cd03234 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGttsGQILFNGQPR----KPdQFQKCVAYVRQDDILLPGLT 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 96 VRELValgRYPWHGALGRFGATDRQKVEEAIELT---GIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSAL 172
Cdd:cd03234 98 VRETL---TYTAILRLPRKSSDAIRKKRVEDVLLrdlALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGL 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1759772862 173 D--IAHQIevLSLVRKLSHEKDLsVFVVLH----DVnmaARFCDEVFALHSGRLI 221
Cdd:cd03234 175 DsfTALNL--VSTLSQLARRNRI-VILTIHqprsDL---FRLFDRILLLSSGEIV 223
|
|
| LolD_lipo_ex |
TIGR02211 |
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ... |
21-220 |
3.94e-21 |
|
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 131266 [Multi-domain] Cd Length: 221 Bit Score: 88.56 E-value: 3.94e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 21 LQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFA----RKLAYLPQqtapaAGMLV 96
Cdd:TIGR02211 21 LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAklrnKKLGFIYQ-----FHHLL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 97 RELVALGRYPWHGALGRFGATD-RQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIA 175
Cdd:TIGR02211 96 PDFTALENVAMPLLIGKKSVKEaKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNN 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1759772862 176 HQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFcDEVFALHSGRL 220
Cdd:TIGR02211 176 NAKIIFDLMLELNRELNTSFLVVTHDLELAKKL-DRVLEMKDGQL 219
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
7-230 |
4.01e-21 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 88.75 E-value: 4.01e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTF---SAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAY 83
Cdd:cd03249 2 EFKNVSFrypSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 84 LPQQTAPAAGMlVRELVALGRYPwhgalgrfgATDRQkVEEAIELTGIGAFADRLVD-----------TLSGGERQRVWL 152
Cdd:cd03249 82 VSQEPVLFDGT-IAENIRYGKPD---------ATDEE-VEEAAKKANIHDFIMSLPDgydtlvgergsQLSGGQKQRIAI 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1759772862 153 AMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSheKDLSVFVVLHDVNmAARFCDEVFALHSGRLIAQSTPKGIM 230
Cdd:cd03249 151 ARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRLS-TIRNADLIAVLQNGQVVEQGTHDELM 225
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
7-250 |
8.52e-21 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 87.84 E-value: 8.52e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAG-KALGDWGDREFARKLA--- 82
Cdd:PRK09493 3 EFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGlKVNDPKVDERLIRQEAgmv 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 83 ----YL-PQQTApaagmlvRELVALGryPWHGAlgrfGATDRQKVEEAIEL---TGIGAFADRLVDTLSGGERQRVWLAM 154
Cdd:PRK09493 83 fqqfYLfPHLTA-------LENVMFG--PLRVR----GASKEEAEKQARELlakVGLAERAHHYPSELSGGQQQRVAIAR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 155 LVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLShEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMV--- 231
Cdd:PRK09493 150 ALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLA-EEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKnpp 228
|
250
....*....|....*....
gi 1759772862 232 PERLEEIygipmevMQHTS 250
Cdd:PRK09493 229 SQRLQEF-------LQHVS 240
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
6-196 |
1.02e-20 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 85.67 E-value: 1.02e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 6 FELENVTFSA-AGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKAlgdwgdrefarKLAYL 84
Cdd:cd03223 1 IELENLSLATpDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGE-----------DLLFL 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 85 PQQTAPAAGMLvRELVAlgrYPWHgalgrfgatdrqkveeaieltgigafadrlvDTLSGGERQRVWLAMLVAQDAECLL 164
Cdd:cd03223 70 PQRPYLPLGTL-REQLI---YPWD-------------------------------DVLSGGEQQRLAFARLLLHKPKFVF 114
|
170 180 190
....*....|....*....|....*....|....*....
gi 1759772862 165 LDEPTSALDIAHQIEVLSLVRKL-------SHEKDLSVF 196
Cdd:cd03223 115 LDEATSALDEESEDRLYQLLKELgitvisvGHRPSLWKF 153
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
20-236 |
1.21e-20 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 87.80 E-value: 1.21e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 20 LLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDR------EFARKLAYLPQQTAPAAG 93
Cdd:PRK14246 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIfqidaiKLRKEVGMVFQQPNPFPH 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 94 MLVRELVAlgrYPwhgaLGRFGATDRQKVEEAIE--LTGIGAFA---DRL---VDTLSGGERQRVWLAMLVAQDAECLLL 165
Cdd:PRK14246 105 LSIYDNIA---YP----LKSHGIKEKREIKKIVEecLRKVGLWKevyDRLnspASQLSGGQQQRLTIARALALKPKVLLM 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1759772862 166 DEPTSALDIAHQIEVLSLVRKLshEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMVPERLE 236
Cdd:PRK14246 178 DEPTSMIDIVNSQAIEKLITEL--KNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNE 246
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
7-174 |
1.21e-20 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 90.76 E-value: 1.21e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRfagkaLGDwgdrefARKLAYLPQ 86
Cdd:TIGR03719 324 EAENLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIE-----IGE------TVKLAYVDQ 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 Q-TAPAAGMLVRELVA-------LGRY--PWHGALGRFG--ATDRQKveeaieltgigafadrLVDTLSGGERQRVWLAM 154
Cdd:TIGR03719 393 SrDALDPNKTVWEEISggldiikLGKReiPSRAYVGRFNfkGSDQQK----------------KVGQLSGGERNRVHLAK 456
|
170 180
....*....|....*....|
gi 1759772862 155 LVAQDAECLLLDEPTSALDI 174
Cdd:TIGR03719 457 TLKSGGNVLLLDEPTNDLDV 476
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
2-227 |
1.53e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 87.86 E-value: 1.53e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 2 TSALFELENVTF---SAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFA 78
Cdd:PRK13650 1 MSNIIEVKNLTFkykEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 79 RKLAYLPQQTAPA-AGMLVRELVALGrypwhgaLGRFG---ATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAM 154
Cdd:PRK13650 81 HKIGMVFQNPDNQfVGATVEDDVAFG-------LENKGiphEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAG 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1759772862 155 LVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAArFCDEVFALHSGRLIAQSTPK 227
Cdd:PRK13650 154 AVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPR 225
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
37-204 |
1.70e-20 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 90.25 E-value: 1.70e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 37 IGHNGSGKSTLLKILA-RQQPvsggtvrfagkalgDWGDREFARKLAYLPQQTAPAAGMLVRELVAlgrypwhGALGRFG 115
Cdd:PRK13409 371 VGPNGIGKTTFAKLLAgVLKP--------------DEGEVDPELKISYKPQYIKPDYDGTVEDLLR-------SITDDLG 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 116 ATDRQkvEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSV 195
Cdd:PRK13409 430 SSYYK--SEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATA 507
|
....*....
gi 1759772862 196 FVVLHDVNM 204
Cdd:PRK13409 508 LVVDHDIYM 516
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
7-175 |
2.40e-20 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 86.01 E-value: 2.40e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDrEFARKLAYLPQ 86
Cdd:cd03231 2 EADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRD-SIARGLLYLGH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 QTAPAAGMLVRELVALgrypWHgalgRFGATDrqKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLD 166
Cdd:cd03231 81 APGIKTTLSVLENLRF----WH----ADHSDE--QVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILD 150
|
....*....
gi 1759772862 167 EPTSALDIA 175
Cdd:cd03231 151 EPTTALDKA 159
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
37-204 |
2.50e-20 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 89.84 E-value: 2.50e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 37 IGHNGSGKSTLLKILA-RQQPvsggtvrfagkalgDWGDREFARKLAYLPQQTAPAAGMLVRELValgrypwHGALG-RF 114
Cdd:COG1245 372 VGPNGIGKTTFAKILAgVLKP--------------DEGEVDEDLKISYKPQYISPDYDGTVEEFL-------RSANTdDF 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 115 GATDRQkvEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLS 194
Cdd:COG1245 431 GSSYYK--TEIIKPLGLEKLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRFAENRGKT 508
|
170
....*....|
gi 1759772862 195 VFVVLHDVNM 204
Cdd:COG1245 509 AMVVDHDIYL 518
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
2-223 |
2.51e-20 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 89.88 E-value: 2.51e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 2 TSALFELENVTFS--AAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFAR 79
Cdd:PRK11160 335 DQVSLTLNNVSFTypDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQ 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 80 KLAYLPQQTAPAAGMLVRELvalgrypwhgALGRFGATDrQKVEEAIELTGIGAfadrLVDT--------------LSGG 145
Cdd:PRK11160 415 AISVVSQRVHLFSATLRDNL----------LLAAPNASD-EALIEVLQQVGLEK----LLEDdkglnawlgeggrqLSGG 479
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1759772862 146 ERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKlsHEKDLSVFVVLHDVNMAARFcDEVFALHSGRLIAQ 223
Cdd:PRK11160 480 EQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE--HAQNKTVLMITHRLTGLEQF-DRICVMDNGQIIEQ 554
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
7-223 |
2.99e-20 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 88.32 E-value: 2.99e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENV--TFSAAG--HVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGK---ALGDWGDREFAR 79
Cdd:PRK11153 3 ELKNIskVFPQGGrtIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQdltALSEKELRKARR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 80 KLaylpqqtapaaGML-----------VRELVALgrypwhgAL---GRFGATDRQKVEEAIELTGIGAFADRLVDTLSGG 145
Cdd:PRK11153 83 QI-----------GMIfqhfnllssrtVFDNVAL-------PLelaGTPKAEIKARVTELLELVGLSDKADRYPAQLSGG 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1759772862 146 ERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQ 223
Cdd:PRK11153 145 QKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQ 222
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
5-235 |
3.87e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 86.78 E-value: 3.87e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 5 LFELENVTFSAAGHV-LLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAY 83
Cdd:PRK13652 3 LIETRDLCYSYSGSKeALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 84 LPQQTAPAA-GMLVRELVALGryPWHgaLGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAEC 162
Cdd:PRK13652 83 VFQNPDDQIfSPTVEQDIAFG--PIN--LGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQV 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1759772862 163 LLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMVPERL 235
Cdd:PRK13652 159 LVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDL 231
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
7-220 |
4.89e-20 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 85.60 E-value: 4.89e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFS---AAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAY 83
Cdd:cd03248 13 KFQNVTFAyptRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 84 LPQQTAPAAGMlVRELVALGrypwhgalgrFGATDRQKVEEAIELTGIGAFADRLVD-----------TLSGGERQRVWL 152
Cdd:cd03248 93 VGQEPVLFARS-LQDNIAYG----------LQSCSFECVKEAAQKAHAHSFISELASgydtevgekgsQLSGGQKQRVAI 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1759772862 153 AMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKlSHEkDLSVFVVLHDVNMAARfCDEVFALHSGRL 220
Cdd:cd03248 162 ARALIRNPQVLILDEATSALDAESEQQVQQALYD-WPE-RRTVLVIAHRLSTVER-ADQILVLDGGRI 226
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
7-242 |
7.61e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 86.34 E-value: 7.61e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFS-AAGHVL----LQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWG---DREFA 78
Cdd:PRK13649 4 NLQNVSYTyQAGTPFegraLFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSknkDIKQI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 79 RKLAYLPQQTaPAAGML---VRELVALGryPWHgalgrFGATDR---QKVEEAIELTGIG-AFADRLVDTLSGGERQRVW 151
Cdd:PRK13649 84 RKKVGLVFQF-PESQLFeetVLKDVAFG--PQN-----FGVSQEeaeALAREKLALVGISeSLFEKNPFELSGGQMRRVA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 152 LAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLsHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMV 231
Cdd:PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKL-HQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234
|
250
....*....|...
gi 1759772862 232 P-ERLEEI-YGIP 242
Cdd:PRK13649 235 DvDFLEEKqLGVP 247
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
3-227 |
1.14e-19 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 87.86 E-value: 1.14e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 3 SALFELENVTFS-AAGH---VLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFA 78
Cdd:PRK10535 2 TALLELKDIRRSyPSGEeqvEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 79 R-----------KLAYLPQQTApAAGMLVRELVAlgrypwhgalgrfGATDRQKVEEAIELT---GIGAFADRLVDTLSG 144
Cdd:PRK10535 82 QlrrehfgfifqRYHLLSHLTA-AQNVEVPAVYA-------------GLERKQRLLRAQELLqrlGLEDRVEYQPSQLSG 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 145 GERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLsHEKDLSVFVVLHDVNMAARfCDEVFALHSGRLIAQS 224
Cdd:PRK10535 148 GQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQL-RDRGHTVIIVTHDPQVAAQ-AERVIEIRDGEIVRNP 225
|
...
gi 1759772862 225 TPK 227
Cdd:PRK10535 226 PAQ 228
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
5-229 |
1.42e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 85.51 E-value: 1.42e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 5 LFELENVTFS-AAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTL-LKILARQQPVSGgTVRFAGKALgDWGDR---EFAR 79
Cdd:PRK13639 1 ILETRDLKYSyPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLfLHFNGILKPTSG-EVLIKGEPI-KYDKKsllEVRK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 80 KLAYLPQQT-----APAagmlVRELVALGryPWHgaLGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAM 154
Cdd:PRK13639 79 TVGIVFQNPddqlfAPT----VEEDVAFG--PLN--LGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAG 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1759772862 155 LVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLShEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGI 229
Cdd:PRK13639 151 ILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLN-KEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
7-225 |
2.39e-19 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 87.10 E-value: 2.39e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAA-GHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILAR-QQPVSGgTVRFAGKALGDWGDREFARKLAYL 84
Cdd:TIGR01193 475 VINDVSYSYGyGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGfFQARSG-EILLNGFSLKDIDRHTLRQFINYL 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 85 PQQTAPAAGMLVRELValgrypwhgaLGRFGATDRQKVEEAIELTGIGA--------FADRLVD---TLSGGERQRVWLA 153
Cdd:TIGR01193 554 PQEPYIFSGSILENLL----------LGAKENVSQDEIWAACEIAEIKDdienmplgYQTELSEegsSISGGQKQRIALA 623
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1759772862 154 MLVAQDAECLLLDEPTSALDIahqIEVLSLVRKLSHEKDLSVFVVLHDVNMAARfCDEVFALHSGRLIAQST 225
Cdd:TIGR01193 624 RALLTDSKVLILDESTSNLDT---ITEKKIVNNLLNLQDKTIIFVAHRLSVAKQ-SDKIIVLDHGKIIEQGS 691
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
8-220 |
3.07e-19 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 83.96 E-value: 3.07e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 8 LENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRfAGKA-LGDWGD--REFARKLAYL 84
Cdd:PRK11247 15 LNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELL-AGTApLAEAREdtRLMFQDARLL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 85 PQQTapaagmlVRELVALG-RYPWhgalgrfgatdRQKVEEAIELTGIgafADRLVD---TLSGGERQRVWLAMLVAQDA 160
Cdd:PRK11247 94 PWKK-------VIDNVGLGlKGQW-----------RDAALQALAAVGL---ADRANEwpaALSGGQKQRVALARALIHRP 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 161 ECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRL 220
Cdd:PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
35-220 |
3.29e-19 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 83.29 E-value: 3.29e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 35 ALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFA----RKLAYLPQqtapaAGMLVRELVALG--RYPwh 108
Cdd:PRK10584 40 ALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAklraKHVGFVFQ-----SFMLIPTLNALEnvELP-- 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 109 gALGRfGATDRQKVEEAIEL---TGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVR 185
Cdd:PRK10584 113 -ALLR-GESSRQSRNGAKALleqLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLF 190
|
170 180 190
....*....|....*....|....*....|....*
gi 1759772862 186 KLSHEKDLSVFVVLHDVNMAARfCDEVFALHSGRL 220
Cdd:PRK10584 191 SLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQL 224
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1-242 |
3.79e-19 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 85.66 E-value: 3.79e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 1 MTSALFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGdrEFARK 80
Cdd:PRK11607 15 ALTPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP--PYQRP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 81 LAYLPQQTAPAAGMLVRELVALGRYpwHGALGRFGATDRqkVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDA 160
Cdd:PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLK--QDKLPKAEIASR--VNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRP 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 161 ECLLLDEPTSALDIA----HQIEVLSLVRKLShekdLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPkgimvperlE 236
Cdd:PRK11607 169 KLLLLDEPMGALDKKlrdrMQLEVVDILERVG----VTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEP---------E 235
|
....*.
gi 1759772862 237 EIYGIP 242
Cdd:PRK11607 236 EIYEHP 241
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
20-252 |
4.43e-19 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 83.90 E-value: 4.43e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 20 LLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALgDWGDRefarKLAYLPQQTA-----PAAGM 94
Cdd:PRK13638 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL-DYSKR----GLLALRQQVAtvfqdPEQQI 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 95 LVRELVALGRYPWHGaLGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDI 174
Cdd:PRK13638 91 FYTDIDSDIAFSLRN-LGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDP 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 175 AHQIEVLSLVRKLSHEKDlSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMVPERLEEIYGI--PMEVMQHTSTG 252
Cdd:PRK13638 170 AGRTQMIAIIRRIVAQGN-HVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAMEQAGLtqPWLVKLHTQLG 248
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
20-221 |
5.35e-19 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 81.83 E-value: 5.35e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 20 LLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSG--GTVRFAGKALGDwgdREFARKLAYLPQqtapaagmlvr 97
Cdd:cd03213 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGvsGEVLINGRPLDK---RSFRKIIGYVPQ----------- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 98 ELVALGRypwhgalgrfgatdrQKVEEAIEltgigaFADRLvDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQ 177
Cdd:cd03213 90 DDILHPT---------------LTVRETLM------FAAKL-RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSA 147
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1759772862 178 IEVLSLVRKLSHEkDLSVFVVLHDV-NMAARFCDEVFALHSGRLI 221
Cdd:cd03213 148 LQVMSLLRRLADT-GRTIICSIHQPsSEIFELFDKLLLLSQGRVI 191
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
21-229 |
5.37e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 84.11 E-value: 5.37e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 21 LQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKAL----GDWGDREFARKLAYLPQqtAPAAGML- 95
Cdd:PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHItpetGNKNLKKLRKKVSLVFQ--FPEAQLFe 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 96 --VRELVALGryPWHgalgrFGATDRQKVEEAIELTGIGAFADRLVDT----LSGGERQRVWLAMLVAQDAECLLLDEPT 169
Cdd:PRK13641 101 ntVLKDVEFG--PKN-----FGFSEDEAKEKALKWLKKVGLSEDLISKspfeLSGGQMRRVAIAGVMAYEPEILCLDEPA 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1759772862 170 SALDIAHQIEVLSLV---RKLSHekdlSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGI 229
Cdd:PRK13641 174 AGLDPEGRKEMMQLFkdyQKAGH----TVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEI 232
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
6-223 |
5.38e-19 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 81.59 E-value: 5.38e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 6 FELENVTFSAAG--HVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDrEFARKLAY 83
Cdd:cd03247 1 LSINNVSFSYPEqeQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEK-ALSSLISV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 84 LPQQtapaagmlvrelVALgrypwhgalgrFGATDRQKVEEaieltgigafadrlvdTLSGGERQRVWLAMLVAQDAECL 163
Cdd:cd03247 80 LNQR------------PYL-----------FDTTLRNNLGR----------------RFSGGERQRLALARILLQDAPIV 120
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 164 LLDEPTSALDIAHQIEVLSLVrkLSHEKDLSVFVVLHDVNMAARFcDEVFALHSGRLIAQ 223
Cdd:cd03247 121 LLDEPTVGLDPITERQLLSLI--FEVLKDKTLIWITHHLTGIEHM-DKILFLENGKIIMQ 177
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
4-239 |
5.39e-19 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 83.02 E-value: 5.39e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 4 ALFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARK-LA 82
Cdd:PRK10895 2 ATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRgIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 83 YLPQQTAPAAGMLVRE-LVALGRYpwhgalgRFGATDRQKVEEAIELT---GIGAFADRLVDTLSGGERQRVWLAMLVAQ 158
Cdd:PRK10895 82 YLPQEASIFRRLSVYDnLMAVLQI-------RDDLSAEQREDRANELMeefHIEHLRDSMGQSLSGGERRRVEIARALAA 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 159 DAECLLLDEPTSALDiahQIEVLSLVRKLSHEKD--LSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMVPERLE 236
Cdd:PRK10895 155 NPKFILLDEPFAGVD---PISVIDIKRIIEHLRDsgLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVK 231
|
...
gi 1759772862 237 EIY 239
Cdd:PRK10895 232 RVY 234
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
5-173 |
5.98e-19 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 82.16 E-value: 5.98e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 5 LFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDrEFARKLAYL 84
Cdd:PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRD-EYHQDLLYL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 85 PQQTApaagmLVRELVALGRYPWHGALGrfGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLL 164
Cdd:PRK13538 80 GHQPG-----IKTELTALENLRFYQRLH--GPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWI 152
|
....*....
gi 1759772862 165 LDEPTSALD 173
Cdd:PRK13538 153 LDEPFTAID 161
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1-240 |
6.50e-19 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 84.09 E-value: 6.50e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 1 MTSALFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGdwGDREFAR- 79
Cdd:PRK13537 3 MSVAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVP--SRARHARq 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 80 KLAYLPQQTAPAAGMLVRE-LVALGRYpwhgaLGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQ 158
Cdd:PRK13537 81 RVGVVPQFDNLDPDFTVREnLLVFGRY-----FGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVN 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 159 DAECLLLDEPTSALDIAHQIEVLSLVRKLShEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMVPE---RL 235
Cdd:PRK13537 156 DPDVLVLDEPTTGLDPQARHLMWERLRSLL-ARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESEigcDV 234
|
....*
gi 1759772862 236 EEIYG 240
Cdd:PRK13537 235 IEIYG 239
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-239 |
8.90e-19 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 82.62 E-value: 8.90e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 1 MTSALFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARK 80
Cdd:PRK11614 1 MEKVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMRE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 81 -LAYLPQQTAPAAGMLVRELVALGrypwhgalGRFGatDRQKVEEAIELtgIGAFADRLVD-------TLSGGERQRVWL 152
Cdd:PRK11614 81 aVAIVPEGRRVFSRMTVEENLAMG--------GFFA--ERDQFQERIKW--VYELFPRLHErriqragTMSGGEQQMLAI 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 153 AMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLsHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMVP 232
Cdd:PRK11614 149 GRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQL-REQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227
|
....*..
gi 1759772862 233 ERLEEIY 239
Cdd:PRK11614 228 EAVRSAY 234
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
7-225 |
9.67e-19 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 85.15 E-value: 9.67e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFS--AAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYL 84
Cdd:TIGR02203 332 EFRNVTFRypGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALV 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 85 PQQTapaagMLVRELVALgrypwHGALGRFGATDRQKVEEAIELTGIGAFADRL---VDT--------LSGGERQRVWLA 153
Cdd:TIGR02203 412 SQDV-----VLFNDTIAN-----NIAYGRTEQADRAEIERALAAAYAQDFVDKLplgLDTpigengvlLSGGQRQRLAIA 481
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1759772862 154 MLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKdlSVFVVLHDVNMAARfCDEVFALHSGRLIAQST 225
Cdd:TIGR02203 482 RALLKDAPILILDEATSALDNESERLVQAALERLMQGR--TTLVIAHRLSTIEK-ADRIVVMDDGRIVERGT 550
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
5-205 |
1.04e-18 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 82.44 E-value: 1.04e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 5 LFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKAL-GDWGDREFA-RKLA 82
Cdd:PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVeGPGAERGVVfQNEG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 83 YLPQQTAPAAGMLVRELVALGRypwhgalgrfgATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAEC 162
Cdd:PRK11248 81 LLPWRNVQDNVAFGLQLAGVEK-----------MQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQL 149
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1759772862 163 LLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMA 205
Cdd:PRK11248 150 LLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEA 192
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
6-229 |
1.75e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 82.47 E-value: 1.75e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 6 FELENVTF---SAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDRE----FA 78
Cdd:PRK13643 4 FEKVNYTYqpnSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKeikpVR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 79 RKLAYLPQqtAPAAGML---VRELVALGryPWHGALGRFGAtdRQKVEEAIELTGIGA-FADRLVDTLSGGERQRVWLAM 154
Cdd:PRK13643 84 KKVGVVFQ--FPESQLFeetVLKDVAFG--PQNFGIPKEKA--EKIAAEKLEMVGLADeFWEKSPFELSGGQMRRVAIAG 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1759772862 155 LVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLsHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGI 229
Cdd:PRK13643 158 ILAMEPEVLVLDEPTAGLDPKARIEMMQLFESI-HQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
7-225 |
1.76e-18 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 81.76 E-value: 1.76e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTF--SAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYL 84
Cdd:cd03252 2 TFEHVRFryKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 85 PQQTAPAAGMlVRELVALGRypwhgalgrfGATDRQKVEEAIELTGIGAFADRL---VDT--------LSGGERQRVWLA 153
Cdd:cd03252 82 LQENVLFNRS-IRDNIALAD----------PGMSMERVIEAAKLAGAHDFISELpegYDTivgeqgagLSGGQRQRIAIA 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1759772862 154 MLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSheKDLSVFVVLHDVNmAARFCDEVFALHSGRLIAQST 225
Cdd:cd03252 151 RALIHNPRILIFDEATSALDYESEHAIMRNMHDIC--AGRTVIIIAHRLS-TVKNADRIIVMEKGRIVEQGS 219
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
6-176 |
3.37e-18 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 80.21 E-value: 3.37e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 6 FELENVTFS-----AAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGkalgdwgdrefarK 80
Cdd:cd03250 1 ISVEDASFTwdsgeQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 81 LAYLPQQtapaagmlvrelvalgryPWH--GALgR----FGAT-DRQKVEEAIE---------------LTGIGafaDRL 138
Cdd:cd03250 68 IAYVSQE------------------PWIqnGTI-RenilFGKPfDEERYEKVIKacalepdleilpdgdLTEIG---EKG 125
|
170 180 190
....*....|....*....|....*....|....*...
gi 1759772862 139 VdTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDiAH 176
Cdd:cd03250 126 I-NLSGGQKQRISLARAVYSDADIYLLDDPLSAVD-AH 161
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1-240 |
3.48e-18 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 82.57 E-value: 3.48e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 1 MTSALFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGdREFARK 80
Cdd:PRK13536 37 MSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARAR 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 81 LAYLPQQTAPAAGMLVRE-LVALGRYpwhgalgrFGATDRQkVEEAI----ELTGIGAFADRLVDTLSGGERQRVWLAML 155
Cdd:PRK13536 116 IGVVPQFDNLDLEFTVREnLLVFGRY--------FGMSTRE-IEAVIpsllEFARLESKADARVSDLSGGMKRRLTLARA 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 156 VAQDAECLLLDEPTSALDIAHQIEVLSLVRKLShEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGiMVPERL 235
Cdd:PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLL-ARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHA-LIDEHI 264
|
....*....
gi 1759772862 236 E----EIYG 240
Cdd:PRK13536 265 GcqviEIYG 273
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
35-212 |
3.59e-18 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 82.09 E-value: 3.59e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 35 ALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGD---REFARKL--------AYL-PQQTapaagmlVRELVAl 102
Cdd:COG4608 48 GLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDITGLSGrelRPLRRRMqmvfqdpyASLnPRMT-------VGDIIA- 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 103 grYPW--HGALGRfgATDRQKVEEAIELTGIGA-FADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIE 179
Cdd:COG4608 120 --EPLriHGLASK--AERRERVAELLELVGLRPeHADRYPHEFSGGQRQRIGIARALALNPKLIVCDEPVSALDVSIQAQ 195
|
170 180 190
....*....|....*....|....*....|...
gi 1759772862 180 VLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEV 212
Cdd:COG4608 196 VLNLLEDLQDELGLTYLFISHDLSVVRHISDRV 228
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
2-240 |
3.78e-18 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 83.42 E-value: 3.78e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 2 TSALFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKAlgdwgdREFARKL 81
Cdd:PRK11288 1 SSPYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQE------MRFASTT 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 82 AylpqqtAPAAGM--------LVREL-VA----LGRYPwhgalGRFGATDR----QKVEEAIELTGIGAFADRLVDTLSG 144
Cdd:PRK11288 75 A------ALAAGVaiiyqelhLVPEMtVAenlyLGQLP-----HKGGIVNRrllnYEAREQLEHLGVDIDPDTPLKYLSI 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 145 GERQRVWLAMLVAQDAECLLLDEPTSALDiAHQIEVL-SLVRKLSHEkDLSVFVVLHDVNMAARFCDEVFALHSGRLIA- 222
Cdd:PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLS-AREIEQLfRVIRELRAE-GRVILYVSHRMEEIFALCDAITVFKDGRYVAt 221
|
250 260
....*....|....*....|....*.
gi 1759772862 223 ----QSTPK----GIMVPERLEEIYG 240
Cdd:PRK11288 222 fddmAQVDRdqlvQAMVGREIGDIYG 247
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
7-174 |
4.28e-18 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 83.24 E-value: 4.28e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRfagkaLGDwgdrefARKLAYLPQ 86
Cdd:PRK11819 326 EAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIK-----IGE------TVKLAYVDQ 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 Q-TAPAAGMLVRELVA-------LGRY--PWHGALGRFG--ATDRQKveeaieltgigafadrLVDTLSGGERQRVWLAM 154
Cdd:PRK11819 395 SrDALDPNKTVWEEISggldiikVGNReiPSRAYVGRFNfkGGDQQK----------------KVGVLSGGERNRLHLAK 458
|
170 180
....*....|....*....|
gi 1759772862 155 LVAQDAECLLLDEPTSALDI 174
Cdd:PRK11819 459 TLKQGGNVLLLDEPTNDLDV 478
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
2-186 |
4.85e-18 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 82.93 E-value: 4.85e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 2 TSALFELENVT-FSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKAlgdwgdrefarK 80
Cdd:COG4178 359 EDGALALEDLTlRTPDGRPLLEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRIARPAGA-----------R 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 81 LAYLPQQTAPAAGMLvRELVAlgrYPwHGAlgrfGATDRQKVEEAIELTGIGAFADRL------VDTLSGGERQRVWLAM 154
Cdd:COG4178 428 VLFLPQRPYLPLGTL-REALL---YP-ATA----EAFSDAELREALEAVGLGHLAERLdeeadwDQVLSLGEQQRLAFAR 498
|
170 180 190
....*....|....*....|....*....|..
gi 1759772862 155 LVAQDAECLLLDEPTSALDIAHQIEVLSLVRK 186
Cdd:COG4178 499 LLLHKPDWLFLDEATSALDEENEAALYQLLRE 530
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
25-239 |
4.87e-18 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 80.40 E-value: 4.87e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 25 TMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARK-LAYLPQQTAPAAGMLVRE--LVA 101
Cdd:TIGR04406 21 SLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLPMHERARLgIGYLPQEASIFRKLTVEEniMAV 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 102 LGRYPWHGALGRfgatdRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVL 181
Cdd:TIGR04406 101 LEIRKDLDRAER-----EERLEALLEEFQISHLRDNKAMSLSGGERRRVEIARALATNPKFILLDEPFAGVDPIAVGDIK 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1759772862 182 SLVRKLShEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMVPERLEEIY 239
Cdd:TIGR04406 176 KIIKHLK-ERGIGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEIVANEKVRRVY 232
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
21-257 |
5.07e-18 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 82.81 E-value: 5.07e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 21 LQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPvSGGTVRFAGKALGDWGDREFaRKL------------AYL-PQq 87
Cdd:COG4172 302 VDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLIP-SEGEIRFDGQDLDGLSRRAL-RPLrrrmqvvfqdpfGSLsPR- 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 88 tapaagMLVRELVALGRYPWHGALGRfgATDRQKVEEAIELTGI-GAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLD 166
Cdd:COG4172 379 ------MTVGQIIAEGLRVHGPGLSA--AERRARVAEALEEVGLdPAARHRYPHEFSGGQRQRIAIARALILEPKLLVLD 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 167 EPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPkgimvperlEEIYGIPmevm 246
Cdd:COG4172 451 EPTSALDVSVQAQILDLLRDLQREHGLAYLFISHDLAVVRALAHRVMVMKDGKVVEQGPT---------EQVFDAP---- 517
|
250
....*....|.
gi 1759772862 247 QHTSTGQLIAS 257
Cdd:COG4172 518 QHPYTRALLAA 528
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
7-201 |
7.44e-18 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 82.41 E-value: 7.44e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAG-HVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYLP 85
Cdd:TIGR02868 336 ELRDLSAGYPGaPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCA 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 86 QQtAPAAGMLVRELVALGRYpwhgalgrfGATDrQKVEEAIELTGIGAFADRLVD-----------TLSGGERQRVWLAM 154
Cdd:TIGR02868 416 QD-AHLFDTTVRENLRLARP---------DATD-EELWAALERVGLADWLRALPDgldtvlgeggaRLSGGERQRLALAR 484
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1759772862 155 LVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKdlSVFVVLHD 201
Cdd:TIGR02868 485 ALLADAPILLLDEPTEHLDAETADELLEDLLAALSGR--TVVLITHH 529
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
5-226 |
2.48e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 79.37 E-value: 2.48e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 5 LFELENVTFSAAGHV---LLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKL 81
Cdd:PRK13642 4 ILEVENLVFKYEKESdvnQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 82 AYLPQQTAPA-AGMLVRELVALGRYpwHGALGRFGATDRqkVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDA 160
Cdd:PRK13642 84 GMVFQNPDNQfVGATVEDDVAFGME--NQGIPREEMIKR--VDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1759772862 161 ECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARfCDEVFALHSGRLIAQSTP 226
Cdd:PRK13642 160 EIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAP 224
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
25-230 |
3.05e-17 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 80.46 E-value: 3.05e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 25 TMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFA----RKLAYLPQQTAPAAGMLVRELV 100
Cdd:PRK10070 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELRevrrKKIAMVFQSFALMPHMTVLDNT 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 101 ALGRypwhgALGRFGATDRQ-KVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIE 179
Cdd:PRK10070 128 AFGM-----ELAGINAEERReKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTE 202
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1759772862 180 VLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIM 230
Cdd:PRK10070 203 MQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
11-223 |
3.44e-17 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 80.66 E-value: 3.44e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 11 VTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSgGTVRFAGKALGDWGDREFARKLAYLPQQTAP 90
Cdd:PRK11174 356 EILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQ-GSLKINGIELRELDPESWRKHLSWVGQNPQL 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 91 AAGMLvRELVALGRYpwhgalgrfGATDrQKVEEAIELTGIGAFADRL---VDT--------LSGGERQRVWLAMLVAQD 159
Cdd:PRK11174 435 PHGTL-RDNVLLGNP---------DASD-EQLQQALENAWVSEFLPLLpqgLDTpigdqaagLSVGQAQRLALARALLQP 503
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1759772862 160 AECLLLDEPTSALDIAHQIEVLSLVRKLSHEKdlSVFVVLHDVNMAARfCDEVFALHSGRLIAQ 223
Cdd:PRK11174 504 CQLLLLDEPTASLDAHSEQLVMQALNAASRRQ--TTLMVTHQLEDLAQ-WDQIWVMQDGQIVQQ 564
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
7-225 |
5.11e-17 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 77.75 E-value: 5.11e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAG------KALGDWGDREFARK 80
Cdd:PRK11124 4 QLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGnhfdfsKTPSDKAIRELRRN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 81 LAYLPQQTAPAAGMLVRElvALGRYPwhgaLGRFGATDRQKVEEAIELTG---IGAFADRLVDTLSGGERQRVWLAMLVA 157
Cdd:PRK11124 84 VGMVFQQYNLWPHLTVQQ--NLIEAP----CRVLGLSKDQALARAEKLLErlrLKPYADRFPLHLSGGQQQRVAIARALM 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 158 QDAECLLLDEPTSALD--IAHQIevLSLVRKLShEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQST 225
Cdd:PRK11124 158 MEPQVLLFDEPTAALDpeITAQI--VSIIRELA-ETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
7-225 |
5.16e-17 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 77.75 E-value: 5.16e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAG------KALGDWGDREFARK 80
Cdd:COG4161 4 QLKNINCFYGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGhqfdfsQKPSEKAIRLLRQK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 81 LAYLPQQTAPAAGMLVRE-LVAlgrypwhGALGRFGATDRQKVEEAIELT---GIGAFADRLVDTLSGGERQRVWLAMLV 156
Cdd:COG4161 84 VGMVFQQYNLWPHLTVMEnLIE-------APCKVLGLSKEQAREKAMKLLarlRLTDKADRFPLHLSGGQQQRVAIARAL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1759772862 157 AQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVfVVLHDVNMAARFCDEVFALHSGRLIAQST 225
Cdd:COG4161 157 MMEPQVLLFDEPTAALDPEITAQVVEIIRELSQTGITQV-IVTHEVEFARKVASQVVYMEKGRIIEQGD 224
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
7-200 |
5.71e-17 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 80.06 E-value: 5.71e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAG--HVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWgdrefarKLAYL 84
Cdd:PRK11176 343 EFRNVTFTYPGkeVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDY-------TLASL 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 85 PQQTApaagmLVRELVAL--GRYPWHGALGRFGATDRQKVEEAIELTGIGAFADRL---VDT--------LSGGERQRVW 151
Cdd:PRK11176 416 RNQVA-----LVSQNVHLfnDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMdngLDTvigengvlLSGGQRQRIA 490
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1759772862 152 LAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLshEKDLSVFVVLH 200
Cdd:PRK11176 491 IARALLRDSPILILDEATSALDTESERAIQAALDEL--QKNRTSLVIAH 537
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
36-242 |
5.83e-17 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 78.69 E-value: 5.83e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 36 LIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGdrEFARKLAYLPQQTAPAAGMLVRELVALGRYpwHGALGRfg 115
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP--PHLRHINMVFQSYALFPHMTVEENVAFGLK--MRKVPR-- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 116 ATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSV 195
Cdd:TIGR01187 75 AEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITF 154
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1759772862 196 FVVLHDVNMAARFCDEVFALHSGRLIAQSTPkgimvperlEEIYGIP 242
Cdd:TIGR01187 155 VFVTHDQEEAMTMSDRIAIMRKGKIAQIGTP---------EEIYEEP 192
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
8-226 |
6.53e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 78.13 E-value: 6.53e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 8 LENVTFSAAGHV-----LLQPLTMSIPVGSLTALIGHNGSGKSTLLkilarqQPVSGGTVRFAGKAL-GDWGDREFARKL 81
Cdd:PRK13645 9 LDNVSYTYAKKTpfefkALNNTSLTFKKNKVTCVIGTTGSGKSTMI------QLTNGLIISETGQTIvGDYAIPANLKKI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 82 AYLPQqtapaagmLVRELVALGRYPWHG----------ALG--RFGATDRQ---KVEEAIELTGIGA-FADRLVDTLSGG 145
Cdd:PRK13645 83 KEVKR--------LRKEIGLVFQFPEYQlfqetiekdiAFGpvNLGENKQEaykKVPELLKLVQLPEdYVKRSPFELSGG 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 146 ERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQST 225
Cdd:PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234
|
.
gi 1759772862 226 P 226
Cdd:PRK13645 235 P 235
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-227 |
7.08e-17 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 79.69 E-value: 7.08e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 1 MTSALFELENVT-----FSAAGHVllqplTMSIPVGSLTALIGHNGSGKSTLLKILA-RQQPvSGGTVRFAGKALgdwgd 74
Cdd:COG3845 1 MMPPALELRGITkrfggVVANDDV-----SLTVRPGEIHALLGENGAGKSTLMKILYgLYQP-DSGEILIDGKPV----- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 75 rEFARklaylPQQtAPAAG--------MLVREL-----VALGRYPWHGALGRFGATdRQKVEEAIELTGIGAFADRLVDT 141
Cdd:COG3845 70 -RIRS-----PRD-AIALGigmvhqhfMLVPNLtvaenIVLGLEPTKGGRLDRKAA-RARIRELSERYGLDVDPDAKVED 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 142 LSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLShEKDLSVFVVLHDVNMAARFCDEVFALHSGRLI 221
Cdd:COG3845 142 LSVGEQQRVEILKALYRGARILILDEPTAVLTPQEADELFEILRRLA-AEGKSIIFITHKLREVMAIADRVTVLRRGKVV 220
|
....*.
gi 1759772862 222 AQSTPK 227
Cdd:COG3845 221 GTVDTA 226
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1-239 |
1.12e-16 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 78.82 E-value: 1.12e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 1 MTSALFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVS--GGTVRFAGKALGDWGDREFA 78
Cdd:PRK13549 1 MMEYLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGtyEGEIIFEGEELQASNIRDTE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 79 RK-LAYLPQQTAPAAGMLVRELVALGRYPwhgalGRFGATDRQKV----EEAIELTGIGAFADRLVDTLSGGERQRVWLA 153
Cdd:PRK13549 81 RAgIAIIHQELALVKELSVLENIFLGNEI-----TPGGIMDYDAMylraQKLLAQLKLDINPATPVGNLGLGQQQLVEIA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 154 MLVAQDAECLLLDEPTSALdIAHQIEVL-SLVRKLSHeKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQ------STP 226
Cdd:PRK13549 156 KALNKQARLLILDEPTASL-TESETAVLlDIIRDLKA-HGIACIYISHKLNEVKAISDTICVIRDGRHIGTrpaagmTED 233
|
250
....*....|....*
gi 1759772862 227 KGI--MVPERLEEIY 239
Cdd:PRK13549 234 DIItmMVGRELTALY 248
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
7-223 |
1.51e-16 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 76.66 E-value: 1.51e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGhVLLQPLTMSIPVGSLTALIGHNGSGKS----TLLKILARQQPVSGGTVRFAGKALGDWGDRefARKLA 82
Cdd:PRK10418 6 ELRNIALQAAQ-PLVHGVSLTLQRGRVLALVGGSGSGKSltcaAALGILPAGVRQTAGRVLLDGKPVAPCALR--GRKIA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 83 YLPQQTAPAAGML------VRE-LVALGRypwhgalgrfgATDRQKVEEAIELTGIGAfADRLVDT----LSGGERQRVW 151
Cdd:PRK10418 83 TIMQNPRSAFNPLhtmhthAREtCLALGK-----------PADDATLTAALEAVGLEN-AARVLKLypfeMSGGMLQRMM 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1759772862 152 LAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQ 223
Cdd:PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQ 222
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
7-183 |
1.55e-16 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 78.39 E-value: 1.55e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKAlgdwgdrefarKLAYLPQ 86
Cdd:PRK15064 321 EVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENA-----------NIGYYAQ 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 QTAP--AAGMLVRELVALGRYPWH------GALGR--FGATDRQKVeeaieltgigafadrlVDTLSGGERQRVWLAMLV 156
Cdd:PRK15064 390 DHAYdfENDLTLFDWMSQWRQEGDdeqavrGTLGRllFSQDDIKKS----------------VKVLSGGEKGRMLFGKLM 453
|
170 180
....*....|....*....|....*..
gi 1759772862 157 AQDAECLLLDEPTSALDIaHQIEVLSL 183
Cdd:PRK15064 454 MQKPNVLVMDEPTNHMDM-ESIESLNM 479
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
1-229 |
2.46e-16 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 77.29 E-value: 2.46e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 1 MTSALFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDRefARK 80
Cdd:PRK09452 10 SLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRH 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 81 LAYLPQQTAPAAGMLVRELVALG----RYPwhgalgrfGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLV 156
Cdd:PRK09452 88 VNTVFQSYALFPHMTVFENVAFGlrmqKTP--------AAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAV 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1759772862 157 AQDAECLLLDEPTSALDI----AHQIEVLSLVRKLShekdlSVFV-VLHDVNMAARFCDEVFALHSGRLIAQSTPKGI 229
Cdd:PRK09452 160 VNKPKVLLLDESLSALDYklrkQMQNELKALQRKLG-----ITFVfVTHDQEEALTMSDRIVVMRDGRIEQDGTPREI 232
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
7-227 |
2.56e-16 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 75.94 E-value: 2.56e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFagkalgdwGDREFARKLAYLPQ 86
Cdd:PRK11264 5 EVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRV--------GDITIDTARSLSQQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 QTapaagmLVREL--------VALGRYPWHGALGRF--GATDRQKV--EEAIEL-------TGIGAFADRLVDTLSGGER 147
Cdd:PRK11264 77 KG------LIRQLrqhvgfvfQNFNLFPHRTVLENIieGPVIVKGEpkEEATARarellakVGLAGKETSYPRRLSGGQQ 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 148 QRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVfVVLHDVNMAARFCDEVFALHSGRLIAQSTPK 227
Cdd:PRK11264 151 QRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMV-IVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1-239 |
3.18e-16 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 77.52 E-value: 3.18e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 1 MTSALFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALgDWGDREFARK 80
Cdd:PRK09700 1 MATPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINY-NKLDHKLAAQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 81 L--AYLPQQTAPAAGMLVRELVALGRYPWHGALGrFGATD----RQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAM 154
Cdd:PRK09700 80 LgiGIIYQELSVIDELTVLENLYIGRHLTKKVCG-VNIIDwremRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAK 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 155 LVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVlHDVNMAARFCDEVFALHSG-----RLIAQSTPKGI 229
Cdd:PRK09700 159 TLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYIS-HKLAEIRRICDRYTVMKDGssvcsGMVSDVSNDDI 237
|
250
....*....|...
gi 1759772862 230 ---MVPERLEEIY 239
Cdd:PRK09700 238 vrlMVGRELQNRF 250
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
7-173 |
3.30e-16 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 77.55 E-value: 3.30e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFS-AAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYLP 85
Cdd:COG5265 359 RFENVSFGyDPERPILKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRDVTQASLRAAIGIVP 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 86 QQTApaagmL----VRELVAlgrYpwhgalGRFGATDRQkVEEAIELTGIGAFADRL---VDT--------LSGGERQRV 150
Cdd:COG5265 439 QDTV-----LfndtIAYNIA---Y------GRPDASEEE-VEAAARAAQIHDFIESLpdgYDTrvgerglkLSGGEKQRV 503
|
170 180
....*....|....*....|...
gi 1759772862 151 WLAMLVAQDAECLLLDEPTSALD 173
Cdd:COG5265 504 AIARTLLKNPPILIFDEATSALD 526
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
7-237 |
3.53e-16 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 75.49 E-value: 3.53e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILA--RQQPVSGGTVRFAGKALGDWGDREFARK---L 81
Cdd:COG0396 2 EIKNLHVSVEGKEILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMghPKYEVTSGSILLDGEDILELSPDERARAgifL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 82 AYlpQQTAPAAGMLVRELV--ALGRypwhGALGRFGATD-RQKVEEAIELTGIGA-FADRLVD-TLSGGERQRVWLAMLV 156
Cdd:COG0396 82 AF--QYPVEIPGVSVSNFLrtALNA----RRGEELSAREfLKLLKEKMKELGLDEdFLDRYVNeGFSGGEKKRNEILQML 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 157 AQDAECLLLDEPTSALDI-AHQIeVLSLVRKLsHEKDLSVFVVLHdvnmAARF-----CDEVFALHSGRlIAQSTPKGIM 230
Cdd:COG0396 156 LLEPKLAILDETDSGLDIdALRI-VAEGVNKL-RSPDRGILIITH----YQRIldyikPDFVHVLVDGR-IVKSGGKELA 228
|
....*..
gi 1759772862 231 vpERLEE 237
Cdd:COG0396 229 --LELEE 233
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
3-188 |
4.72e-16 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 77.46 E-value: 4.72e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 3 SALFELENVTF----SAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQP---VSGGTVRFAGKALgdwgDR 75
Cdd:TIGR00956 757 EDIFHWRNLTYevkiKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTtgvITGGDRLVNGRPL----DS 832
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 76 EFARKLAYLPQQTAPAAGMLVRElvALgrypwhgalgRFGATDRQK-----------VEEAIELTGIGAFADRLVDT--- 141
Cdd:TIGR00956 833 SFQRSIGYVQQQDLHLPTSTVRE--SL----------RFSAYLRQPksvsksekmeyVEEVIKLLEMESYADAVVGVpge 900
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1759772862 142 -LSGGERQRVWLAM-LVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLS 188
Cdd:TIGR00956 901 gLNVEQRKRLTIGVeLVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLA 949
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
30-239 |
5.23e-16 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 74.68 E-value: 5.23e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 30 VGsltaLIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARK-LAYLPQQtapaAG-----------MLVR 97
Cdd:COG1137 32 VG----LLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLPMHKRARLgIGYLPQE----ASifrkltvedniLAVL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 98 ELVALGRypwhgalgrfgATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALD-IAh 176
Cdd:COG1137 104 ELRKLSK-----------KEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARALATNPKFILLDEPFAGVDpIA- 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1759772862 177 QIEVLSLVRKLShEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMVPERLEEIY 239
Cdd:COG1137 172 VADIQKIIRHLK-ERGIGVLITDHNVRETLGICDRAYIISEGKVLAEGTPEEILNNPLVRKVY 233
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
31-223 |
5.75e-16 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 74.96 E-value: 5.75e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 31 GSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGK--------ALGDWGDREFAR-KLAYLPQQTAPA------AGML 95
Cdd:PRK11701 32 GEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRdgqlrdlyALSEAERRRLLRtEWGFVHQHPRDGlrmqvsAGGN 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 96 VRE-LVALG-RYpwHGALgRFGATD-RQKVEeaIELTGIgafaDRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSAL 172
Cdd:PRK11701 112 IGErLMAVGaRH--YGDI-RATAGDwLERVE--IDAARI----DDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGL 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1759772862 173 DIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQ 223
Cdd:PRK11701 183 DVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES 233
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
3-215 |
7.71e-16 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 74.77 E-value: 7.71e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 3 SALFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLK-ILARQQPVSGGTVRFAGKALGdwgdrefarkl 81
Cdd:PRK09544 2 TSLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRvVLGLVAPDEGVIKRNGKLRIG----------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 82 aYLPQQTAPAAGMLVrelvalgrypwhgALGRF----GATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVA 157
Cdd:PRK09544 71 -YVPQKLYLDTTLPL-------------TVNRFlrlrPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALL 136
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1759772862 158 QDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFAL 215
Cdd:PRK09544 137 NRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCL 194
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
2-239 |
8.87e-16 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 76.20 E-value: 8.87e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 2 TSALFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDRE----- 76
Cdd:PRK10762 1 MQALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSsqeag 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 77 ---FARKLAYLPQQTapaagmlVRELVALGRYPwhgaLGRFGATDRQKV-EEAIEL---TGIGAFADRLVDTLSGGERQR 149
Cdd:PRK10762 81 igiIHQELNLIPQLT-------IAENIFLGREF----VNRFGRIDWKKMyAEADKLlarLNLRFSSDKLVGELSIGEQQM 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 150 VWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVlHDVNMAARFCDEVFALHSGRLIAQSTPKGI 229
Cdd:PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYIS-HRLKEIFEICDDVTVFRDGQFIAEREVADL 228
|
250
....*....|....*...
gi 1759772862 230 --------MVPERLEEIY 239
Cdd:PRK10762 229 tedsliemMVGRKLEDQY 246
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
7-230 |
9.04e-16 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 76.68 E-value: 9.04e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGH---VLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILAR-QQPvSGGTVRFAGKALGDWGDREFARKLA 82
Cdd:TIGR00958 480 EFQDVSFSYPNRpdvPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNlYQP-TGGQVLLDGVPLVQYDHHYLHRQVA 558
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 83 YLPQQTAPAAGMlVRELVALGRypwhgalgrfgatdRQKVEEAIELTGIGAFADRLV-------DT--------LSGGER 147
Cdd:TIGR00958 559 LVGQEPVLFSGS-VRENIAYGL--------------TDTPDEEIMAAAKAANAHDFImefpngyDTevgekgsqLSGGQK 623
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 148 QRVWLAMLVAQDAECLLLDEPTSALDiahqIEVLSLVRKLSHEKDLSVFVVLHDVNMAARfCDEVFALHSGRLIAQSTPK 227
Cdd:TIGR00958 624 QRIAIARALVRKPRVLILDEATSALD----AECEQLLQESRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHK 698
|
...
gi 1759772862 228 GIM 230
Cdd:TIGR00958 699 QLM 701
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
2-244 |
1.26e-15 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 74.43 E-value: 1.26e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 2 TSALFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPV-----SGGTVRFAGKAL--GDWGD 74
Cdd:PRK14243 7 TETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLipgfrVEGKVTFHGKNLyaPDVDP 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 75 REFARKLAYLPQQTAPAAGMlVRELVALGRYpwhgALGRFGATDrQKVEEAIELTGI-GAFADRLVDT---LSGGERQRV 150
Cdd:PRK14243 87 VEVRRRIGMVFQKPNPFPKS-IYDNIAYGAR----INGYKGDMD-ELVERSLRQAALwDEVKDKLKQSglsLSGGQQQRL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 151 WLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLshEKDLSVFVVLHDVNMAARFCDEVfALHSGRLIAQSTPKGIM 230
Cdd:PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHEL--KEQYTIIIVTHNMQQAARVSDMT-AFFNVELTEGGGRYGYL 237
|
250
....*....|....*
gi 1759772862 231 VP-ERLEEIYGIPME 244
Cdd:PRK14243 238 VEfDRTEKIFNSPQQ 252
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
18-223 |
1.29e-15 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 75.90 E-value: 1.29e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 18 HVLLQPLTMSIPVGSLTALIGHNGSGKST----LLKILARQqpvsgGTVRFAGKALGDWGDRE---FARKLAYLPQQTAP 90
Cdd:PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTtglaLLRLINSQ-----GEIWFDGQPLHNLNRRQllpVRHRIQVVFQDPNS 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 91 AAG--MLVRELVALGRYPWHGALGrfGATDRQKVEEAIELTGIGAFA-DRLVDTLSGGERQRVWLAMLVAQDAECLLLDE 167
Cdd:PRK15134 374 SLNprLNVLQIIEEGLRVHQPTLS--AAQREQQVIAVMEEVGLDPETrHRYPAEFSGGQRQRIAIARALILKPSLIILDE 451
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1759772862 168 PTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQ 223
Cdd:PRK15134 452 PTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQ 507
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
7-230 |
1.38e-15 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 75.93 E-value: 1.38e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGkalGDWGDREFARKL----A 82
Cdd:NF033858 3 RLEGVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLG---GDMADARHRRAVcpriA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 83 YLPQqtapaagmlvrelvALGR--YP---------WHGALgrFG---ATDRQKVEEAIELTGIGAFADRLVDTLSGGERQ 148
Cdd:NF033858 80 YMPQ--------------GLGKnlYPtlsvfenldFFGRL--FGqdaAERRRRIDELLRATGLAPFADRPAGKLSGGMKQ 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 149 RVWLAMLVAQDAECLLLDEPTSALDiahqieVLS------LVRKLSHEK-DLSVFVVLHDVNMAARFcDEVFALHSGRLI 221
Cdd:NF033858 144 KLGLCCALIHDPDLLILDEPTTGVD------PLSrrqfweLIDRIRAERpGMSVLVATAYMEEAERF-DWLVAMDAGRVL 216
|
....*....
gi 1759772862 222 AQSTPKGIM 230
Cdd:NF033858 217 ATGTPAELL 225
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
36-173 |
1.50e-15 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 75.74 E-value: 1.50e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 36 LIGHNGSGKSTLLKILArqqpvsGGTVRFAGKALGDWGdrefaRKLAYLPQQTAPAAGMLVRELVALGRYPWHGALGRFG 115
Cdd:TIGR03719 36 VLGLNGAGKSTLLRIMA------GVDKDFNGEARPQPG-----IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFN 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 116 ----------------ATDRQKVEEAIELTG---------IGAFADRL------VDTLSGGERQRVWLAMLVAQDAECLL 164
Cdd:TIGR03719 105 eisakyaepdadfdklAAEQAELQEIIDAADawdldsqleIAMDALRCppwdadVTKLSGGERRRVALCRLLLSKPDMLL 184
|
....*....
gi 1759772862 165 LDEPTSALD 173
Cdd:TIGR03719 185 LDEPTNHLD 193
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
31-233 |
1.56e-15 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 75.85 E-value: 1.56e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 31 GSLTALIGHNGSGKSTLLKILARQQP---VSGGTVRFAGKALGDWgdrEFARKLAYLPQQTAPAAGMLVRE-LValgrYP 106
Cdd:TIGR00955 51 GELLAVMGSSGAGKTTLMNALAFRSPkgvKGSGSVLLNGMPIDAK---EMRAISAYVQQDDLFIPTLTVREhLM----FQ 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 107 WHGALGRFGATD--RQKVEEAIELTGIGAFADRL------VDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQI 178
Cdd:TIGR00955 124 AHLRMPRRVTKKekRERVDEVLQALGLRKCANTRigvpgrVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAY 203
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1759772862 179 EVLSLVRKLShEKDLSVFVVLHDVNmAARFC--DEVFALHSGRLIAQSTPK---------GIMVPE 233
Cdd:TIGR00955 204 SVVQVLKGLA-QKGKTIICTIHQPS-SELFElfDKIILMAEGRVAYLGSPDqavpffsdlGHPCPE 267
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
7-221 |
2.03e-15 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 73.72 E-value: 2.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILAR-----QQPVSGGTVRFAGKAL--GDWGDREFAR 79
Cdd:PRK14267 6 ETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRllelnEEARVEGEVRLFGRNIysPDVDPIEVRR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 80 KLAYLPQQTAPAAGMLVRELVALGrYPWHGALGRFGATDrQKVEEAIELTGI-GAFADRLVD---TLSGGERQRVWLAML 155
Cdd:PRK14267 86 EVGMVFQYPNPFPHLTIYDNVAIG-VKLNGLVKSKKELD-ERVEWALKKAALwDEVKDRLNDypsNLSGGQRQRLVIARA 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1759772862 156 VAQDAECLLLDEPTSALDIAHQIEVLSLVRKLshEKDLSVFVVLHDVNMAARFCDEVFALHSGRLI 221
Cdd:PRK14267 164 LAMKPKILLMDEPTANIDPVGTAKIEELLFEL--KKEYTIVLVTHSPAQAARVSDYVAFLYLGKLI 227
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
18-242 |
2.08e-15 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 73.46 E-value: 2.08e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 18 HVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDRE-------------FARKLAYL 84
Cdd:PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDgqlkvadknqlrlLRTRLTMV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 85 PQQTAPAAGMLVRELVAlgRYPWHgALGRFGATDRQKVEEAIELTGIGAFA-DRLVDTLSGGERQRVWLAMLVAQDAECL 163
Cdd:PRK10619 98 FQHFNLWSHMTVLENVM--EAPIQ-VLGLSKQEARERAVKYLAKVGIDERAqGKYPVHLSGGQQQRVSIARALAMEPEVL 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1759772862 164 LLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVfVVLHDVNMAARFCDEVFALHSGRLIAQSTPkgimvperlEEIYGIP 242
Cdd:PRK10619 175 LFDEPTSALDPELVGEVLRIMQQLAEEGKTMV-VVTHEMGFARHVSSHVIFLHQGKIEEEGAP---------EQLFGNP 243
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
5-229 |
2.46e-15 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 73.65 E-value: 2.46e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 5 LFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGK---ALGDWGDREFARKL 81
Cdd:PRK11831 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGEnipAMSRSRLYTVRKRM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 82 AYLPQQTAPAAGMLVRELVAlgrYPW--HGALGRfgATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQD 159
Cdd:PRK11831 87 SMLFQSGALFTDMNVFDNVA---YPLreHTQLPA--PLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALE 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 160 AECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGI 229
Cdd:PRK11831 162 PDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
13-230 |
5.34e-15 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 74.39 E-value: 5.34e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 13 FSAAGHVllqplTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALgDWGDREFARKLAYLPQqtapaA 92
Cdd:NF033858 279 FTAVDHV-----SFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPV-DAGDIATRRRVGYMSQ-----A 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 93 GML-----VRELVALgrypwHGALGRFGATDR-QKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLD 166
Cdd:NF033858 348 FSLygeltVRQNLEL-----HARLFHLPAAEIaARVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILD 422
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1759772862 167 EPTSALD-IA------HQIEvlslvrkLSHEKDLSVFVVLHDVNMAARfCDEVFALHSGRLIAQSTPKGIM 230
Cdd:NF033858 423 EPTSGVDpVArdmfwrLLIE-------LSREDGVTIFISTHFMNEAER-CDRISLMHAGRVLASDTPAALV 485
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
17-220 |
8.21e-15 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 71.44 E-value: 8.21e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 17 GHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDRE---FARKLAYLPQQTAPAAG 93
Cdd:PRK10908 14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREvpfLRRQIGMIFQDHHLLMD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 94 MLVRELVALgryPWHGAlGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALD 173
Cdd:PRK10908 94 RTVYDNVAI---PLIIA-GASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1759772862 174 IAHQIEVLSLVRKLShEKDLSVFVVLHDVNMAARFCDEVFALHSGRL 220
Cdd:PRK10908 170 DALSEGILRLFEEFN-RVGVTVLMATHDIGLISRRSYRMLTLSDGHL 215
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
7-217 |
8.50e-15 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 71.99 E-value: 8.50e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSG-----GTVRFAGKALgdWGDREFARKL 81
Cdd:PRK14258 9 KVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESevrveGRVEFFNQNI--YERRVNLNRL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 82 AYLPQQTAPAAG---MLVRELVALGR--YPWHGALGRFGAtdrqkVEEAIELTGI-GAFADRLVDT---LSGGERQRVWL 152
Cdd:PRK14258 87 RRQVSMVHPKPNlfpMSVYDNVAYGVkiVGWRPKLEIDDI-----VESALKDADLwDEIKHKIHKSaldLSGGQQQRLCI 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1759772862 153 AMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHS 217
Cdd:PRK14258 162 ARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKG 226
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
20-188 |
9.20e-15 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 70.35 E-value: 9.20e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 20 LLQPLTMSIPVGSLTALIGHNGSGKSTLLKILA--RQQPVSGGTVRFAGKALgdwgDREFARKLAYLPQQTAPAAGMLVR 97
Cdd:cd03232 22 LLNNISGYVKPGTLTALMGESGAGKTTLLDVLAgrKTAGVITGEILINGRPL----DKNFQRSTGYVEQQDVHSPNLTVR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 98 ElvALgrypwhgalgRFGATDRQkveeaieltgigafadrlvdtLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQ 177
Cdd:cd03232 98 E--AL----------RFSALLRG---------------------LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAA 144
|
170
....*....|.
gi 1759772862 178 IEVLSLVRKLS 188
Cdd:cd03232 145 YNIVRFLKKLA 155
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
24-221 |
9.57e-15 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 72.43 E-value: 9.57e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 24 LTMSIPVGSLTALIGHNGSGKSTLLKILarqqpvSG------GTVRFAGKAlgDWGDR-EFARKLA-----------YLP 85
Cdd:COG4586 41 ISFTIEPGEIVGFIGPNGAGKSTTIKML------TGilvptsGEVRVLGYV--PFKRRkEFARRIGvvfgqrsqlwwDLP 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 86 qqtapaagmlVRELVALgrypwHGALGRFGATD-RQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLL 164
Cdd:COG4586 113 ----------AIDSFRL-----LKAIYRIPDAEyKKRLDELVELLDLGELLDTPVRQLSLGQRMRCELAAALLHRPKILF 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1759772862 165 LDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLI 221
Cdd:COG4586 178 LDEPTIGLDVVSKEAIREFLKEYNRERGTTILLTSHDMDDIEALCDRVIVIDHGRII 234
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
1-225 |
1.11e-14 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 73.21 E-value: 1.11e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 1 MTSALFELENVTFS-AAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFAR 79
Cdd:PRK10790 336 LQSGRIDIDNVSFAyRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQ 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 80 KLAYLPQQTAPAAGMLVRElVALGRypwhgalgrfgATDRQKVEEAIELTGIGAFADRLVD-----------TLSGGERQ 148
Cdd:PRK10790 416 GVAMVQQDPVVLADTFLAN-VTLGR-----------DISEEQVWQALETVQLAELARSLPDglytplgeqgnNLSVGQKQ 483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 149 RVWLAMLVAQDAECLLLDEPTSALDIAHQIEV---LSLVRKLShekdlSVFVVLHDVNMAARfCDEVFALHSGRLIAQST 225
Cdd:PRK10790 484 LLALARVLVQTPQILILDEATANIDSGTEQAIqqaLAAVREHT-----TLVVIAHRLSTIVE-ADTILVLHRGQAVEQGT 557
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1-229 |
1.23e-14 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 71.17 E-value: 1.23e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 1 MTSALFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARK 80
Cdd:PRK11300 1 MSQPLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 81 -LAYLPQQTAPAAGMLVRE--LVALGRYPWHGALGRFGAT------DRQKVEEA---IELTGIGAFADRLVDTLSGGERQ 148
Cdd:PRK11300 81 gVVRTFQHVRLFREMTVIEnlLVAQHQQLKTGLFSGLLKTpafrraESEALDRAatwLERVGLLEHANRQAGNLAYGQQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 149 RVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKG 228
Cdd:PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEE 240
|
.
gi 1759772862 229 I 229
Cdd:PRK11300 241 I 241
|
|
| chvA |
TIGR01192 |
glucan exporter ATP-binding protein; This model describes glucan exporter ATP binding protein ... |
7-225 |
1.38e-14 |
|
glucan exporter ATP-binding protein; This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 130260 [Multi-domain] Cd Length: 585 Bit Score: 73.00 E-value: 1.38e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTF----SAAGhvlLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLA 82
Cdd:TIGR01192 336 EFRHITFefanSSQG---VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 83 YLPQQtapaAGMLVRELVALGRypwhgaLGRFGATDRQKVEEAIELTGIGAFADRL--VDT--------LSGGERQRVWL 152
Cdd:TIGR01192 413 TVFQD----AGLFNRSIRENIR------LGREGATDEEVYEAAKAAAAHDFILKRSngYDTlvgergnrLSGGERQRLAI 482
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1759772862 153 AMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSheKDLSVFVVLHDVNmAARFCDEVFALHSGRLIAQST 225
Cdd:TIGR01192 483 ARAILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFIIAHRLS-TVRNADLVLFLDQGRLIEKGS 552
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
6-201 |
1.57e-14 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 72.68 E-value: 1.57e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 6 FELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQ-QPVSG----GTvrfagkalgdwgdrefarK 80
Cdd:PRK11147 320 FEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQlQADSGrihcGT------------------K 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 81 L--AYL--------PQQTapaagmlVRELVALGRypwhgalgrfgatdrqkveEAIELTG-----IGAFADRL------- 138
Cdd:PRK11147 382 LevAYFdqhraeldPEKT-------VMDNLAEGK-------------------QEVMVNGrprhvLGYLQDFLfhpkram 435
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1759772862 139 --VDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDiahqIEVLSLVRKLSHEKDLSVFVVLHD 201
Cdd:PRK11147 436 tpVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLD----VETLELLEELLDSYQGTVLLVSHD 496
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
24-259 |
2.36e-14 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 72.20 E-value: 2.36e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 24 LTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALgdwgdREFARKLAYLPQQTAP------------- 90
Cdd:PRK10261 35 LSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLL-----RRRSRQVIELSEQSAAqmrhvrgadmami 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 91 ------------AAGMLVRELVALgrypwHGALGRFGA-TDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVA 157
Cdd:PRK10261 110 fqepmtslnpvfTVGEQIAESIRL-----HQGASREEAmVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALS 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 158 QDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTpkgimvperLEE 237
Cdd:PRK10261 185 CRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGS---------VEQ 255
|
250 260
....*....|....*....|...
gi 1759772862 238 IYGIPmevmQHTSTGQLIAS-PR 259
Cdd:PRK10261 256 IFHAP----QHPYTRALLAAvPQ 274
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
13-226 |
2.46e-14 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 72.74 E-value: 2.46e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 13 FSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDrEFARKLAYLPQQTapaa 92
Cdd:TIGR01257 938 FEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLD-AVRQSLGMCPQHN---- 1012
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 93 gMLVRELVALGRYPWHGAL-GRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSA 171
Cdd:TIGR01257 1013 -ILFHHLTVAEHILFYAQLkGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSG 1091
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1759772862 172 LDIAHQIEVLSLVrkLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTP 226
Cdd:TIGR01257 1092 VDPYSRRSIWDLL--LKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTP 1144
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
142-227 |
2.89e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 70.58 E-value: 2.89e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 142 LSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLI 221
Cdd:PRK13646 146 MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIV 225
|
....*.
gi 1759772862 222 AQSTPK 227
Cdd:PRK13646 226 SQTSPK 231
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
20-230 |
3.70e-14 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 69.84 E-value: 3.70e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 20 LLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGdwgdrefarKLAylpqqTAPAAGMLVREL 99
Cdd:PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMS---------KLS-----SAAKAELRNQKL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 100 VALgrYPWHGALGRFGATD----------------RQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECL 163
Cdd:PRK11629 90 GFI--YQFHHLLPDFTALEnvamplligkkkpaeiNSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLV 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1759772862 164 LLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVfALHSGRLIAQSTPKGIM 230
Cdd:PRK11629 168 LADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQL-EMRDGRLTAELSLMGAE 233
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
31-219 |
4.35e-14 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 69.39 E-value: 4.35e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 31 GSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFagKALGDW------GDREF----ARKLAY-------LPQQTApaag 93
Cdd:COG4778 37 GECVALTGPSGAGKSTLLKCIYGNYLPDSGSILV--RHDGGWvdlaqaSPREIlalrRRTIGYvsqflrvIPRVSA---- 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 94 mlvRELVALGRYpwhgALGRFGATDRQKVEEAIELTGIgafADRLVD----TLSGGERQRVWLAMLVAQDAECLLLDEPT 169
Cdd:COG4778 111 ---LDVVAEPLL----ERGVDREEARARARELLARLNL---PERLWDlppaTFSGGEQQRVNIARGFIADPPLLLLDEPT 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1759772862 170 SALDIAHQIEVLSLVRKLsheKD-----LSVFvvlHDVNMAARFCDEVFALHSGR 219
Cdd:COG4778 181 ASLDAANRAVVVELIEEA---KArgtaiIGIF---HDEEVREAVADRVVDVTPFS 229
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
10-219 |
5.61e-14 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 70.52 E-value: 5.61e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 10 NVTFSAA-GHVL-LQPLTMSIPVGSLTALIGHNGSGKS----TLLKILARQQPVsGGTVRFAGKALGDWGDREF----AR 79
Cdd:PRK09473 19 RVTFSTPdGDVTaVNDLNFSLRAGETLGIVGESGSGKSqtafALMGLLAANGRI-GGSATFNGREILNLPEKELnklrAE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 80 KLAYLPQQ--TAPAAGMLV----RELVALgrypwHGALGRfgatdRQKVEEAIeltgigafadRLVDTL----------- 142
Cdd:PRK09473 98 QISMIFQDpmTSLNPYMRVgeqlMEVLML-----HKGMSK-----AEAFEESV----------RMLDAVkmpearkrmkm 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 143 -----SGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHS 217
Cdd:PRK09473 158 yphefSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYA 237
|
..
gi 1759772862 218 GR 219
Cdd:PRK09473 238 GR 239
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
7-237 |
6.67e-14 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 68.32 E-value: 6.67e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILArQQP---VSGGTVRFAGKALGDWGDREFARKLAY 83
Cdd:cd03217 2 EIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIM-GHPkyeVTEGEILFKGEDITDLPPEERARLGIF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 84 LPQQtapaagmlvrelvalgrYPwhgalgrfgatdrqkveeaIELTGIgAFAD--RLVD-TLSGGERQRVWLAMLVAQDA 160
Cdd:cd03217 81 LAFQ-----------------YP-------------------PEIPGV-KNADflRYVNeGFSGGEKKRNEILQLLLLEP 123
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1759772862 161 ECLLLDEPTSALDIAHQIEVLSLVRKLsHEKDLSVFVVLHDVNMAARF-CDEVFALHSGRlIAQSTPKGIMvpERLEE 237
Cdd:cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKL-REEGKSVLIITHYQRLLDYIkPDRVHVLYDGR-IVKSGDKELA--LEIEK 197
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
36-173 |
7.29e-14 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 70.53 E-value: 7.29e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 36 LIGHNGSGKSTLLKILARQQPVSGGTVRFAGKAlgdwgdrefarKLAYLPQQTAPAAGMLVRELVALGRYPWHGALGRFG 115
Cdd:PRK11819 38 VLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGI-----------KVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFN 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 116 AT---------------DRQ-KVEEAIELTG---------IGAFADRL------VDTLSGGERQRVWLAMLVAQDAECLL 164
Cdd:PRK11819 107 EIyaayaepdadfdalaAEQgELQEIIDAADawdldsqleIAMDALRCppwdakVTKLSGGERRRVALCRLLLEKPDMLL 186
|
....*....
gi 1759772862 165 LDEPTSALD 173
Cdd:PRK11819 187 LDEPTNHLD 195
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
7-221 |
8.05e-14 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 70.76 E-value: 8.05e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVL-LQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYLP 85
Cdd:PRK13657 336 EFDDVSFSYDNSRQgVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVF 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 86 QQtapaAGMLVRELVALGRypwhgaLGRFGATDrQKVEEAIELTGIGAFADRLVD-----------TLSGGERQRVWLAM 154
Cdd:PRK13657 416 QD----AGLFNRSIEDNIR------VGRPDATD-EEMRAAAERAQAHDFIERKPDgydtvvgergrQLSGGERQRLAIAR 484
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1759772862 155 LVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKdlSVFVVLHDVNmAARFCDEVFALHSGRLI 221
Cdd:PRK13657 485 ALLKDPPILILDEATSALDVETEAKVKAALDELMKGR--TTFIIAHRLS-TVRNADRILVFDNGRVV 548
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
5-222 |
1.72e-13 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 69.67 E-value: 1.72e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 5 LFELENVTF-SAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREF-ARKLA 82
Cdd:COG3845 257 VLEVENLSVrDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRERrRLGVA 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 83 YLP---QQTAPAAGMLVRELVALGRYpWHGALGRFGATDRQKVEE-AIELtgIGAF------ADRLVDTLSGGERQRVWL 152
Cdd:COG3845 337 YIPedrLGRGLVPDMSVAENLILGRY-RRPPFSRGGFLDRKAIRAfAEEL--IEEFdvrtpgPDTPARSLSGGNQQKVIL 413
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1759772862 153 AMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLShEKDLSVFVVLHDVnmaarfcDEVFAL-------HSGRLIA 222
Cdd:COG3845 414 ARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELR-DAGAAVLLISEDL-------DEILALsdriavmYEGRIVG 482
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
5-240 |
1.74e-13 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 69.47 E-value: 1.74e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 5 LFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSG--GTVRFAGKALGDWGDREFARK-L 81
Cdd:TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTwdGEIYWSGSPLKASNIRDTERAgI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 82 AYLPQQTAPAAGMLVRELVALGRYPWH-GALGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDA 160
Cdd:TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLpGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 161 ECLLLDEPTSALDIAHQIEVLSLVRKLShEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMVPERLEEIYG 240
Cdd:TIGR02633 161 RLLILDEPSSSLTEKETEILLDIIRDLK-AHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSEDDIITMMVG 239
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
36-259 |
1.89e-13 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 68.72 E-value: 1.89e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 36 LIGHNGSGKSTLLK-----ILARQqpvsgGTVRFAGKALGDwgDREFARKLAYLPQQTAPAAGMLVRELVALGRYPWHG- 109
Cdd:PRK13631 57 IIGNSGSGKSTLVThfnglIKSKY-----GTIQVGDIYIGD--KKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQl 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 110 --------------ALGRFGATDRQKVEEAIELTGIG-AFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDI 174
Cdd:PRK13631 130 fkdtiekdimfgpvALGVKKSEAKKLAKFYLNKMGLDdSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDP 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 175 AHQIEVLSLVrKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMVPErleeiygipmEVMQHTStgql 254
Cdd:PRK13631 210 KGEHEMMQLI-LDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQ----------HIINSTS---- 274
|
....*
gi 1759772862 255 IASPR 259
Cdd:PRK13631 275 IQVPR 279
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
17-223 |
4.90e-13 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 67.59 E-value: 4.90e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 17 GHVLLQpLTMSIPVGSLTALIGHNGSGKSTLLKIlarqqpVSG------GTVRFAGKALGDWGDREF----ARKLAYLPQ 86
Cdd:PRK11144 11 GDLCLT-VNLTLPAQGITAIFGRSGAGKTSLINA------ISGltrpqkGRIVLNGRVLFDAEKGIClppeKRRIGYVFQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 QTAPAAGMLVRelvalgrypwhGALgRFG--ATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWL--AMLVAqdAEC 162
Cdd:PRK11144 84 DARLFPHYKVR-----------GNL-RYGmaKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIgrALLTA--PEL 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1759772862 163 LLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQ 223
Cdd:PRK11144 150 LLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAF 210
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
24-230 |
4.99e-13 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 68.29 E-value: 4.99e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 24 LTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAgkaLGD-WGDreFARKLAYLPQQTAPAAGMLVRELval 102
Cdd:TIGR03269 303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVR---VGDeWVD--MTKPGPDGRGRAKRYIGILHQEY--- 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 103 GRYPWHGALGRFgaTDRQKVEEAIELTGIGA----------------FADRLVDTLSGGERQRVWLAMLVAQDAECLLLD 166
Cdd:TIGR03269 375 DLYPHRTVLDNL--TEAIGLELPDELARMKAvitlkmvgfdeekaeeILDKYPDELSEGERHRVALAQVLIKEPRIVILD 452
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1759772862 167 EPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIM 230
Cdd:TIGR03269 453 EPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIV 516
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
41-222 |
5.61e-13 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 68.12 E-value: 5.61e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 41 GSGKSTLLKILARQQPVSGGTVRFAGKAL--GDWGDReFARKLAYLP---QQTAPAAGMLVRE---LVALGRYPWHGALG 112
Cdd:COG1129 288 GAGRTELARALFGADPADSGEIRLDGKPVriRSPRDA-IRAGIAYVPedrKGEGLVLDLSIREnitLASLDRLSRGGLLD 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 113 RfgATDRQKVEEAIELTGI-GAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLShEK 191
Cdd:COG1129 367 R--RRERALAEEYIKRLRIkTPSPEQPVGNLSGGNQQKVVLAKWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELA-AE 443
|
170 180 190
....*....|....*....|....*....|.
gi 1759772862 192 DLSVFVVLHDVNMAARFCDEVFALHSGRLIA 222
Cdd:COG1129 444 GKAVIVISSELPELLGLSDRILVMREGRIVG 474
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
2-220 |
5.86e-13 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 67.89 E-value: 5.86e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 2 TSALFELENVTFSAAGHVllQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARK- 80
Cdd:PRK09700 262 HETVFEVRNVTSRDRKKV--RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKg 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 81 LAYLPQ---QTAPAAGMLVRELVALGRY----PWHGALGRFGATDRQKV-EEAIELTGIG-AFADRLVDTLSGGERQRVW 151
Cdd:PRK09700 340 MAYITEsrrDNGFFPNFSIAQNMAISRSlkdgGYKGAMGLFHEVDEQRTaENQRELLALKcHSVNQNITELSGGNQQKVL 419
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1759772862 152 LAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLShEKDLSVFVVLHDVNMAARFCDEVFALHSGRL 220
Cdd:PRK09700 420 ISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLA-DDGKVILMVSSELPEIITVCDRIAVFCEGRL 487
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
4-201 |
6.05e-13 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 67.56 E-value: 6.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 4 ALFELENVTFS-AAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREfaRKLA 82
Cdd:PRK11650 2 AGLKLQAVRKSyDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPAD--RDIA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 83 YLPQQTAPAAGMLVRELVALG---RypwhgALGRfgATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVwlAM---LV 156
Cdd:PRK11650 80 MVFQNYALYPHMSVRENMAYGlkiR-----GMPK--AEIEERVAEAARILELEPLLDRKPRELSGGQRQRV--AMgraIV 150
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1759772862 157 AQDAeCLLLDEPTSALD----IAHQIEVLSLVRKLsheKDLSVFVVlHD 201
Cdd:PRK11650 151 REPA-VFLFDEPLSNLDaklrVQMRLEIQRLHRRL---KTTSLYVT-HD 194
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
10-191 |
7.21e-13 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 65.36 E-value: 7.21e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 10 NVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDwgDR-EFARKLAYLPQQT 88
Cdd:PRK13540 6 ELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK--DLcTYQKQLCFVGHRS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 89 APAAGMLVRELVALGRYPWHGALGrfgatdrqkVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEP 168
Cdd:PRK13540 84 GINPYLTLRENCLYDIHFSPGAVG---------ITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEP 154
|
170 180
....*....|....*....|....
gi 1759772862 169 TSALDiahQIEVLSLVRKL-SHEK 191
Cdd:PRK13540 155 LVALD---ELSLLTIITKIqEHRA 175
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
7-226 |
7.22e-13 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 65.51 E-value: 7.22e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHV--LLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYL 84
Cdd:cd03369 8 EVENLSVRYAPDLppVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTII 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 85 PQQTAPAAGMLVRELVALGRYpwhgalgrfgaTDRQkVEEAIELTGIGafadrlvDTLSGGERQRVWLAMLVAQDAECLL 164
Cdd:cd03369 88 PQDPTLFSGTIRSNLDPFDEY-----------SDEE-IYGALRVSEGG-------LNLSQGQRQLLCLARALLKRPRVLV 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1759772862 165 LDEPTSALDIAHQIEVLSLVRKLSheKDLSVFVVLHDVNMAARfCDEVFALHSGRLIAQSTP 226
Cdd:cd03369 149 LDEATASIDYATDALIQKTIREEF--TNSTILTIAHRLRTIID-YDKILVMDAGEVKEYDHP 207
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
2-176 |
1.07e-12 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 67.50 E-value: 1.07e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 2 TSALFELENvtfsaagHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVrfagkalgdWGDREFarkl 81
Cdd:PTZ00243 664 TDDFFELEP-------KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV---------WAERSI---- 723
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 82 AYLPQQtAPAAGMLVRelvalgrypwhGALGRFGATDRQKVEEAIELTGIGAFADRL---VDT--------LSGGERQRV 150
Cdd:PTZ00243 724 AYVPQQ-AWIMNATVR-----------GNILFFDEEDAARLADAVRVSQLEADLAQLgggLETeigekgvnLSGGQKARV 791
|
170 180
....*....|....*....|....*.
gi 1759772862 151 WLAMLVAQDAECLLLDEPTSALDiAH 176
Cdd:PTZ00243 792 SLARAVYANRDVYLLDDPLSALD-AH 816
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
17-199 |
1.36e-12 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 64.59 E-value: 1.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 17 GHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSG---GTVRFAGKALGDWGDReFARKLAYLPQQTAPAAG 93
Cdd:cd03233 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVsveGDIHYNGIPYKEFAEK-YPGEIIYVSEEDVHFPT 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 94 MLVRELValgrypwhgalgrfgatdrqkvEEAIELTGigafaDRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALD 173
Cdd:cd03233 98 LTVRETL----------------------DFALRCKG-----NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLD 150
|
170 180
....*....|....*....|....*.
gi 1759772862 174 IAHQIEVLSLVRKLSHEKDLSVFVVL 199
Cdd:cd03233 151 SSTALEILKCIRTMADVLKTTTFVSL 176
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
5-220 |
1.99e-12 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 66.73 E-value: 1.99e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 5 LFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQ-QPVSGGTVRFAGKALGdwgdrEFAR-KLA 82
Cdd:PRK10636 312 LLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGElAPVSGEIGLAKGIKLG-----YFAQhQLE 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 83 YLPQQTAPaagmlVRELVALGrypwhgalgrfgatdRQKVEEAIE--LTGIGAFADRLVDT---LSGGERQRVWLAMLVA 157
Cdd:PRK10636 387 FLRADESP-----LQHLARLA---------------PQELEQKLRdyLGGFGFQGDKVTEEtrrFSGGEKARLVLALIVW 446
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1759772862 158 QDAECLLLDEPTSALDI-AHQIEVLSLVrklshEKDLSVFVVLHDVNMAARFCDEVFALHSGRL 220
Cdd:PRK10636 447 QRPNLLLLDEPTNHLDLdMRQALTEALI-----DFEGALVVVSHDRHLLRSTTDDLYLVHDGKV 505
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
2-172 |
2.26e-12 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 66.23 E-value: 2.26e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 2 TSALFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREfARKL 81
Cdd:PRK15439 8 APPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAK-AHQL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 82 A-YL-PQQTAPAAGMLVRELVALGrypwhgaLGRfGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQD 159
Cdd:PRK15439 87 GiYLvPQEPLLFPNLSVKENILFG-------LPK-RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRD 158
|
170
....*....|...
gi 1759772862 160 AECLLLDEPTSAL 172
Cdd:PRK15439 159 SRILILDEPTASL 171
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
4-220 |
3.11e-12 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 63.22 E-value: 3.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 4 ALFELENVTFSAAghvlLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREF-ARKLA 82
Cdd:cd03215 3 PVLEVRGLSVKGA----VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAiRAGIA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 83 YLP---QQTAPAAGMLVRELVALGRYpwhgalgrfgatdrqkveeaieltgigafadrlvdtLSGGERQRVWLAMLVAQD 159
Cdd:cd03215 79 YVPedrKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLARD 122
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1759772862 160 AECLLLDEPTSALDIAHQIEVLSLVRKLShEKDLSVFVVLHDVNMAARFCDEVFALHSGRL 220
Cdd:cd03215 123 PRVLILDEPTRGVDVGAKAEIYRLIRELA-DAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
35-259 |
3.77e-12 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 64.99 E-value: 3.77e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 35 ALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDwGDREFARKL------------AYL-PQQTApaaGMLVRELVA 101
Cdd:PRK11308 45 AVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLK-ADPEAQKLLrqkiqivfqnpyGSLnPRKKV---GQILEEPLL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 102 LgrypwHGALGRfgATDRQKVEEAIELTGIGA-FADRLVDTLSGGERQRVWLA---MLvaqDAECLLLDEPTSALDIAHQ 177
Cdd:PRK11308 121 I-----NTSLSA--AERREKALAMMAKVGLRPeHYDRYPHMFSGGQRQRIAIAralML---DPDVVVADEPVSALDVSVQ 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 178 IEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQStPKgimvperlEEIYGIPmevmQHTSTGQLI-A 256
Cdd:PRK11308 191 AQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG-TK--------EQIFNNP----RHPYTQALLsA 257
|
...
gi 1759772862 257 SPR 259
Cdd:PRK11308 258 TPR 260
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
5-221 |
4.06e-12 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 64.04 E-value: 4.06e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 5 LFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQ--PVSGGTVRFAGKALGDWGDREFARKLA 82
Cdd:PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREdyEVTGGTVEFKGKDLLELSPEDRAGEGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 83 YLPQQ---TAPAAG---MLVRELVALGRYPWHGALGRFGATDRqkVEEAIELTGIGA-FADRLVDT-LSGGERQRVWLAM 154
Cdd:PRK09580 81 FMAFQypvEIPGVSnqfFLQTALNAVRSYRGQEPLDRFDFQDL--MEEKIALLKMPEdLLTRSVNVgFSGGEKKRNDILQ 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1759772862 155 LVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLI 221
Cdd:PRK09580 159 MAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV 225
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
2-174 |
4.20e-12 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 63.71 E-value: 4.20e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 2 TSALFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDwGDRefARKL 81
Cdd:PRK13543 8 APPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATR-GDR--SRFM 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 82 AYLPQQTApaagmLVRELVALGRYpwHGALGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAE 161
Cdd:PRK13543 85 AYLGHLPG-----LKADLSTLENL--HFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAP 157
|
170
....*....|...
gi 1759772862 162 CLLLDEPTSALDI 174
Cdd:PRK13543 158 LWLLDEPYANLDL 170
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
8-223 |
5.24e-12 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 64.67 E-value: 5.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 8 LENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREfaRKLAYLPQQ 87
Cdd:PRK11000 6 LRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE--RGVGMVFQS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 88 TAPAAGMLVRELVALGRypwhgALGRFGATDRQK-VEEAIELTGIGAFADRLVDTLSGGERQRVWLA-MLVAQdAECLLL 165
Cdd:PRK11000 84 YALYPHLSVAENMSFGL-----KLAGAKKEEINQrVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGrTLVAE-PSVFLL 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1759772862 166 DEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRlIAQ 223
Cdd:PRK11000 158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGR-VAQ 214
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
7-226 |
6.83e-12 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 64.82 E-value: 6.83e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKIL--------------------------------ARQ 54
Cdd:TIGR03269 2 EVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLrgmdqyeptsgriiyhvalcekcgyverpskvGEP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 55 QPVSGGTvrFAGKALGDWG-----DREFARKLAYLPQQTAPAAG---MLVRELVALGR--YPWHGALGRfgatdrqkVEE 124
Cdd:TIGR03269 82 CPVCGGT--LEPEEVDFWNlsdklRRRIRKRIAIMLQRTFALYGddtVLDNVLEALEEigYEGKEAVGR--------AVD 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 125 AIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNM 204
Cdd:TIGR03269 152 LIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV 231
|
250 260
....*....|....*....|..
gi 1759772862 205 AARFCDEVFALHSGRLIAQSTP 226
Cdd:TIGR03269 232 IEDLSDKAIWLENGEIKEEGTP 253
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
116-221 |
1.24e-11 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 63.61 E-value: 1.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 116 ATDRQKVEEAIELTGIGAFADRL---VDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKD 192
Cdd:PRK11022 125 KTRRQRAIDLLNQVGIPDPASRLdvyPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKEN 204
|
90 100
....*....|....*....|....*....
gi 1759772862 193 LSVFVVLHDVNMAARFCDEVFALHSGRLI 221
Cdd:PRK11022 205 MALVLITHDLALVAEAAHKIIVMYAGQVV 233
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
20-230 |
1.41e-11 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 64.23 E-value: 1.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 20 LLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYLPQQTAPAAGMlVRel 99
Cdd:PLN03232 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGT-VR-- 1327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 100 VALGRYPWHGALGRFGATDRQKVEEAIELTGIGAFADRLV--DTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDiahq 177
Cdd:PLN03232 1328 FNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEggENFSVGQRQLLSLARALLRRSKILVLDEATASVD---- 1403
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1759772862 178 IEVLSLVRKLSHE--KDLSVFVVLHDVNMAARfCDEVFALHSGRLIAQSTPKGIM 230
Cdd:PLN03232 1404 VRTDSLIQRTIREefKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELL 1457
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
142-228 |
2.60e-11 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 60.66 E-value: 2.60e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 142 LSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDE--VFALHSGR 219
Cdd:cd03222 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRihVFEGEPGV 151
|
....*....
gi 1759772862 220 LIAQSTPKG 228
Cdd:cd03222 152 YGIASQPKG 160
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
8-229 |
6.60e-11 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 62.05 E-value: 6.60e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 8 LENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDRE-FARKLAYLPQ 86
Cdd:PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEaLENGISMVHQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 QTAPAAGMLVRELVALGRYPWHGALgrfgaTDRQKV---EEAI--ELtGIGAFADRLVDTLSGGERQRVWLAMLVAQDAE 161
Cdd:PRK10982 81 ELNLVLQRSVMDNMWLGRYPTKGMF-----VDQDKMyrdTKAIfdEL-DIDIDPRAKVATLSVSQMQMIEIAKAFSYNAK 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1759772862 162 CLLLDEPTSALDIAHQIEVLSLVRKLShEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGI 229
Cdd:PRK10982 155 IVIMDEPTSSLTEKEVNHLFTIIRKLK-ERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
8-225 |
6.81e-11 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 62.04 E-value: 6.81e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 8 LENVTFSaaghvlLQPltmsipvGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYLPQQ 87
Cdd:PRK10789 331 LENVNFT------LKP-------GQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQT 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 88 TapaagMLVRELVAlgrypWHGALGRFGATdRQKVEEAIELTGIGAFADRL---VDT--------LSGGERQRVWLAMLV 156
Cdd:PRK10789 398 P-----FLFSDTVA-----NNIALGRPDAT-QQEIEHVARLASVHDDILRLpqgYDTevgergvmLSGGQKQRISIARAL 466
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1759772862 157 AQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKdlSVFVVLHDVNmAARFCDEVFALHSGRLIAQST 225
Cdd:PRK10789 467 LLNAEILILDDALSAVDGRTEHQILHNLRQWGEGR--TVIISAHRLS-ALTEASEILVMQHGHIAQRGN 532
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
8-200 |
1.01e-10 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 61.30 E-value: 1.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 8 LENVTF-SAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKAlgdwgdrefarKLAYLPQ 86
Cdd:TIGR00954 454 FENIPLvTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKG-----------KLFYVPQ 522
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 87 QTAPAAGMLvRELVALGRYPWHGALGRFGATDRQKVEEAIELT-------GIGAFADrLVDTLSGGERQRVWLAMLVAQD 159
Cdd:TIGR00954 523 RPYMTLGTL-RDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLThileregGWSAVQD-WMDVLSGGEKQRIAMARLFYHK 600
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1759772862 160 AECLLLDEPTSALdiahQIEVLSLVRKLSHEKDLSVFVVLH 200
Cdd:TIGR00954 601 PQFAILDECTSAV----SVDVEGYMYRLCREFGITLFSVSH 637
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
5-173 |
1.28e-10 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 61.57 E-value: 1.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 5 LFELENVtFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDwGDREFARKLAYL 84
Cdd:TIGR01257 1940 LNELTKV-YSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNMGYC 2017
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 85 PQQTAPAAGMLVRELVALgrypwHGALGRFGATDRQKVEE-AIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECL 163
Cdd:TIGR01257 2018 PQFDAIDDLLTGREHLYL-----YARLRGVPAEEIEKVANwSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLV 2092
|
170
....*....|
gi 1759772862 164 LLDEPTSALD 173
Cdd:TIGR01257 2093 LLDEPTTGMD 2102
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
8-176 |
1.45e-10 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 61.11 E-value: 1.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 8 LENVTFSAAGHV--LLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKalgdwgdrefarkLAYLP 85
Cdd:TIGR00957 639 VHNATFTWARDLppTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGS-------------VAYVP 705
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 86 QQtAPAAGMLVRELVALGRypwhgalgRFGATDRQKVEEAIEL------------TGIGafaDRLVDtLSGGERQRVWLA 153
Cdd:TIGR00957 706 QQ-AWIQNDSLRENILFGK--------ALNEKYYQQVLEACALlpdleilpsgdrTEIG---EKGVN-LSGGQKQRVSLA 772
|
170 180
....*....|....*....|...
gi 1759772862 154 MLVAQDAECLLLDEPTSALDiAH 176
Cdd:TIGR00957 773 RAVYSNADIYLFDDPLSAVD-AH 794
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
7-226 |
2.21e-10 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 58.66 E-value: 2.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFSAAGH--VLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYL 84
Cdd:cd03244 4 EFKNVSLRYRPNlpPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISII 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 85 PQQTAPAAGMLVRELVALGRYpwhgalgrfgaTDrQKVEEAIELTGIGAFADRLVDTL-----------SGGERQRVWLA 153
Cdd:cd03244 84 PQDPVLFSGTIRSNLDPFGEY-----------SD-EELWQALERVGLKEFVESLPGGLdtvveeggenlSVGQRQLLCLA 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1759772862 154 MLVAQDAECLLLDEPTSALDIAHQIEVLSLVRklSHEKDLSVFVVLHDVNMAARfCDEVFALHSGRLIAQSTP 226
Cdd:cd03244 152 RALLRKSKILVLDEATASVDPETDALIQKTIR--EAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDSP 221
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
119-221 |
2.48e-10 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 59.71 E-value: 2.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 119 RQKVEEAIELTGIG-AFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLsHEKDLSVFV 197
Cdd:PRK13651 142 KKRAAKYIELVGLDeSYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNL-NKQGKTIIL 220
|
90 100
....*....|....*....|....
gi 1759772862 198 VLHDVNMAARFCDEVFALHSGRLI 221
Cdd:PRK13651 221 VTHDLDNVLEWTKRTIFFKDGKII 244
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
18-220 |
2.54e-10 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 60.29 E-value: 2.54e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 18 HVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKAlgdwgdrefarklaylpQQTAPAAGmLVR 97
Cdd:PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSA-----------------ALIAISSG-LNG 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 98 ELVALGRYPWHGALgrFGATDRQKVE---EAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEptsALDI 174
Cdd:PRK13545 99 QLTGIENIELKGLM--MGLTKEKIKEiipEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDE---ALSV 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1759772862 175 AHQIEVLSLVRKLSH--EKDLSVFVVLHDVNMAARFCDEVFALHSGRL 220
Cdd:PRK13545 174 GDQTFTKKCLDKMNEfkEQGKTIFFISHSLSQVKSFCTKALWLHYGQV 221
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
11-220 |
3.15e-10 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 59.87 E-value: 3.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 11 VTFSAA------GHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQ-QPVSGGTVRFAgkalgdwgdrefARKLAY 83
Cdd:PLN03073 509 ISFSDAsfgypgGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGElQPSSGTVFRSA------------KVRMAV 576
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 84 LPQQTAPAAGMLVRELVALGR-YP------WHGALGRFGATdrqkveeaieltgiGAFADRLVDTLSGGERQRVWLAMLV 156
Cdd:PLN03073 577 FSQHHVDGLDLSSNPLLYMMRcFPgvpeqkLRAHLGSFGVT--------------GNLALQPMYTLSGGQKSRVAFAKIT 642
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1759772862 157 AQDAECLLLDEPTSALDIAhqiEVLSLVRKLSHEKDlSVFVVLHDVNMAARFCDEVFALHSGRL 220
Cdd:PLN03073 643 FKKPHILLLDEPSNHLDLD---AVEALIQGLVLFQG-GVLMVSHDEHLISGSVDELWVVSEGKV 702
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
21-176 |
3.37e-10 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 60.14 E-value: 3.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 21 LQPLTMSIPVGSLTALIGHNGSGKSTLLK-ILARQQPVSGGTVRFAGKalgdwgdrefarkLAYLPQqTAPAAGMLVREL 99
Cdd:PLN03130 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISaMLGELPPRSDASVVIRGT-------------VAYVPQ-VSWIFNATVRDN 698
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 100 VAlgrypwhgalgrFGAT-DRQKVEEAIE---------------LTGIGafaDRLVDtLSGGERQRVWLAMLVAQDAECL 163
Cdd:PLN03130 699 IL------------FGSPfDPERYERAIDvtalqhdldllpggdLTEIG---ERGVN-ISGGQKQRVSMARAVYSNSDVY 762
|
170
....*....|...
gi 1759772862 164 LLDEPTSALDiAH 176
Cdd:PLN03130 763 IFDDPLSALD-AH 774
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
37-219 |
3.38e-10 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 59.33 E-value: 3.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 37 IGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREF--ARK---------LAYL-PQqtapaagMLVRELVALGR 104
Cdd:PRK15079 53 VGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWraVRSdiqmifqdpLASLnPR-------MTIGEIIAEPL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 105 YPWHGALGRfgATDRQKVEEAIELTGI-GAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSL 183
Cdd:PRK15079 126 RTYHPKLSR--QEVKDRVKAMMLKVGLlPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNL 203
|
170 180 190
....*....|....*....|....*....|....*.
gi 1759772862 184 VRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGR 219
Cdd:PRK15079 204 LQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGH 239
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
21-174 |
3.89e-10 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 58.11 E-value: 3.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 21 LQPLTMSIPVGSLTALIGHNGSGKSTLL-KILARQQPVSGgTVRFAGKALGDWGDREFARKLAYLPQQTAPAAGML---V 96
Cdd:cd03290 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLlAILGEMQTLEG-KVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLnatV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 97 RELVALGRyPWHGAlgRFGA-TDRQKVEEAIELTGIG---AFADRLVDtLSGGERQRVWLAMLVAQDAECLLLDEPTSAL 172
Cdd:cd03290 96 EENITFGS-PFNKQ--RYKAvTDACSLQPDIDLLPFGdqtEIGERGIN-LSGGQRQRICVARALYQNTNIVFLDDPFSAL 171
|
..
gi 1759772862 173 DI 174
Cdd:cd03290 172 DI 173
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
4-210 |
5.68e-10 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 59.19 E-value: 5.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 4 ALFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAgkalgdwGDREFARklay 83
Cdd:PRK11147 2 SLISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYE-------QDLIVAR---- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 84 LPQQTAPAAGMLVRELVALG---------RYpwHgALGRFGATDR--------QKVEEAIELTGIGAFADRLVDT----- 141
Cdd:PRK11147 71 LQQDPPRNVEGTVYDFVAEGieeqaeylkRY--H-DISHLVETDPseknlnelAKLQEQLDHHNLWQLENRINEVlaqlg 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 142 ---------LSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAhQIEVLslvrklshEKDL-----SVFVVLHD----VN 203
Cdd:PRK11147 148 ldpdaalssLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIE-TIEWL--------EGFLktfqgSIIFISHDrsfiRN 218
|
....*..
gi 1759772862 204 MAARFCD 210
Cdd:PRK11147 219 MATRIVD 225
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
7-167 |
7.31e-10 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 58.66 E-value: 7.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFS-----AAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALgDWGDREFARKL 81
Cdd:COG4615 329 ELRGVTYRypgedGDEGFTLGPIDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPV-TADNREAYRQL 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 82 -------AYLPQQTAPAAGMLVRELVAlgRYpwhgaLGRFGATDRQKVEEaieltgiGAFADRlvdTLSGGERQRvwLAM 154
Cdd:COG4615 408 fsavfsdFHLFDRLLGLDGEADPARAR--EL-----LERLELDHKVSVED-------GRFSTT---DLSQGQRKR--LAL 468
|
170
....*....|....*
gi 1759772862 155 LVA--QDAECLLLDE 167
Cdd:COG4615 469 LVAllEDRPILVFDE 483
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
24-231 |
9.16e-10 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 57.89 E-value: 9.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 24 LTMSIPVGSLTALIGHNGSGKSTLLK----ILARQQPVSGGTVRFAGKALGDWGDREfARKLA--------YLPQQTAPA 91
Cdd:PRK15093 26 VSMTLTEGEIRGLVGESGSGKSLIAKaicgVTKDNWRVTADRMRFDDIDLLRLSPRE-RRKLVghnvsmifQEPQSCLDP 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 92 AGMLVRELV-ALGRYPWHGA-LGRFGATDRQkveeAIEL---TGIGAFADRLVD---TLSGGERQRVWLAMLVAQDAECL 163
Cdd:PRK15093 105 SERVGRQLMqNIPGWTYKGRwWQRFGWRKRR----AIELlhrVGIKDHKDAMRSfpyELTEGECQKVMIAIALANQPRLL 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1759772862 164 LLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQSTPKGIMV 231
Cdd:PRK15093 181 IADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVT 248
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
19-174 |
1.10e-09 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 58.26 E-value: 1.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 19 VLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDW------------------GDREFARK 80
Cdd:PRK10636 15 VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWvnqetpalpqpaleyvidGDREYRQL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 81 LAYLPQQTAPAAGMLVRELvalgrypwHGALGRFGA-TDRQKVeeAIELTGIGAFADRL---VDTLSGGERQRVWLAMLV 156
Cdd:PRK10636 95 EAQLHDANERNDGHAIATI--------HGKLDAIDAwTIRSRA--ASLLHGLGFSNEQLerpVSDFSGGWRMRLNLAQAL 164
|
170
....*....|....*...
gi 1759772862 157 AQDAECLLLDEPTSALDI 174
Cdd:PRK10636 165 ICRSDLLLLDEPTNHLDL 182
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
11-178 |
1.21e-09 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 58.38 E-value: 1.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 11 VTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSgGTVRFAGKALGDWGDREFARKLAYLPQQTAP 90
Cdd:TIGR01271 1225 AKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDGVSWNSVTLQTWRKAFGVIPQKVFI 1303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 91 AAGMLVRELVALGRYpwhgalgrfgaTDRQ--KVEEAIELTG-IGAFADR----LVD---TLSGGERQRVWLAMLVAQDA 160
Cdd:TIGR01271 1304 FSGTFRKNLDPYEQW-----------SDEEiwKVAEEVGLKSvIEQFPDKldfvLVDggyVLSNGHKQLMCLARSILSKA 1372
|
170
....*....|....*....
gi 1759772862 161 ECLLLDEPTSALD-IAHQI 178
Cdd:TIGR01271 1373 KILLLDEPSAHLDpVTLQI 1391
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
31-221 |
1.96e-09 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 57.56 E-value: 1.96e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 31 GSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFA---RKLAYLPQQtaPAAGMLVRELVA---LGR 104
Cdd:PRK10261 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQalrRDIQFIFQD--PYASLDPRQTVGdsiMEP 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 105 YPWHGALGrfGATDRQKVEEAIELTGI-GAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSL 183
Cdd:PRK10261 428 LRVHGLLP--GKAAAARVAWLLERVGLlPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINL 505
|
170 180 190
....*....|....*....|....*....|....*...
gi 1759772862 184 VRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLI 221
Cdd:PRK10261 506 LLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIV 543
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
24-220 |
2.88e-09 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 56.98 E-value: 2.88e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 24 LTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDRE-FARKLAYLP---QQT-----APaagm 94
Cdd:PRK15439 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQrLARGLVYLPedrQSSglyldAP---- 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 95 LVRELVALGrypwHGALGRF--GATDRQKVEEAIELTGIG-AFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSA 171
Cdd:PRK15439 358 LAWNVCALT----HNRRGFWikPARENAVLERYRRALNIKfNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRG 433
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1759772862 172 LDIAHQIEVLSLVRKLShEKDLSVFVVLHDVNMAARFCDEVFALHSGRL 220
Cdd:PRK15439 434 VDVSARNDIYQLIRSIA-AQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
10-200 |
3.74e-09 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 55.35 E-value: 3.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 10 NVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPvsggtvRFAGKALGDWGDREFARKLAYLPqqta 89
Cdd:COG2401 35 GVELRVVERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALK------GTPVAGCVDVPDNQFGREASLID---- 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 90 paagmlvrelvalgrypwhgALGRFGATDrqkveEAIELTGIGAFAD-----RLVDTLSGGERQRVWLAMLVAQDAECLL 164
Cdd:COG2401 105 --------------------AIGRKGDFK-----DAVELLNAVGLSDavlwlRRFKELSTGQKFRFRLALLLAERPKLLV 159
|
170 180 190
....*....|....*....|....*....|....*.
gi 1759772862 165 LDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLH 200
Cdd:COG2401 160 IDEFCSHLDRQTAKRVARNLQKLARRAGITLVVATH 195
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
19-203 |
3.91e-09 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 56.88 E-value: 3.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 19 VLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYLPQQTAPAAGMLVRE 98
Cdd:TIGR00957 1300 LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMN 1379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 99 LVALGRYpwhgalgrfgatDRQKVEEAIELTGIGAFADRLVD-----------TLSGGERQRVWLAMLVAQDAECLLLDE 167
Cdd:TIGR00957 1380 LDPFSQY------------SDEEVWWALELAHLKTFVSALPDkldhecaeggeNLSVGQRQLVCLARALLRKTKILVLDE 1447
|
170 180 190
....*....|....*....|....*....|....*.
gi 1759772862 168 PTSALDIAHQIEVLSLVRklSHEKDLSVFVVLHDVN 203
Cdd:TIGR00957 1448 ATAAVDLETDNLIQSTIR--TQFEDCTVLTIAHRLN 1481
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
13-218 |
5.79e-09 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 55.25 E-value: 5.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 13 FSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKalgdwgdrefarkLAYLPQQTAPAA 92
Cdd:cd03291 45 LCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR-------------ISFSSQFSWIMP 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 93 GMlVRELVALG------RYpwhgalgrfgatdrQKVEEAIELT-GIGAFADR----LVD---TLSGGERQRVWLAMLVAQ 158
Cdd:cd03291 112 GT-IKENIIFGvsydeyRY--------------KSVVKACQLEeDITKFPEKdntvLGEggiTLSGGQRARISLARAVYK 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1759772862 159 DAECLLLDEPTSALDIAHQIEVL-SLVRKLSHEKdlSVFVVLHDVNMAARfCDEVFALHSG 218
Cdd:cd03291 177 DADLYLLDSPFGYLDVFTEKEIFeSCVCKLMANK--TRILVTSKMEHLKK-ADKILILHEG 234
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
142-230 |
6.62e-09 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 55.30 E-value: 6.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 142 LSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLI 221
Cdd:COG4170 159 LTEGECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYCGQTV 238
|
....*....
gi 1759772862 222 AQSTPKGIM 230
Cdd:COG4170 239 ESGPTEQIL 247
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
21-178 |
6.99e-09 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 56.14 E-value: 6.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 21 LQPLTMSIPVGSLTALIGHNGSGKSTLLK-ILARQQPVSGGTVRFAGKalgdwgdrefarkLAYLPQqTAPAAGMLVREL 99
Cdd:PLN03232 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISaMLGELSHAETSSVVIRGS-------------VAYVPQ-VSWIFNATVREN 698
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 100 VALGRYPWHGALGRfgATDRQKVEEAIEL------TGIGafaDRLVDtLSGGERQRVWLAMLVAQDAECLLLDEPTSALD 173
Cdd:PLN03232 699 ILFGSDFESERYWR--AIDVTALQHDLDLlpgrdlTEIG---ERGVN-ISGGQKQRVSMARAVYSNSDIYIFDDPLSALD 772
|
....*..
gi 1759772862 174 --IAHQI 178
Cdd:PLN03232 773 ahVAHQV 779
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
13-218 |
1.33e-08 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 55.30 E-value: 1.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 13 FSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKalgdwgdrefarkLAYLPQQTAPAA 92
Cdd:TIGR01271 434 FSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR-------------ISFSPQTSWIMP 500
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 93 GMlVRELVALG------RYpwhgalgrfgatdrQKVEEAIELT-GIGAFADR----LVD---TLSGGERQRVWLAMLVAQ 158
Cdd:TIGR01271 501 GT-IKDNIIFGlsydeyRY--------------TSVIKACQLEeDIALFPEKdktvLGEggiTLSGGQRARISLARAVYK 565
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1759772862 159 DAECLLLDEPTSALDIAHQIEVLS--LVRKLSHEKDLSVFVVLHDVNMAarfcDEVFALHSG 218
Cdd:TIGR01271 566 DADLYLLDSPFTHLDVVTEKEIFEscLCKLMSNKTRILVTSKLEHLKKA----DKILLLHEG 623
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
7-167 |
1.55e-08 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 54.98 E-value: 1.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 7 ELENVTFS-AAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILA-RQQPVSGGtVRFAGKALgDWGDREFARKL--- 81
Cdd:PRK10522 324 ELRNVTFAyQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTgLYQPQSGE-ILLDGKPV-TAEQPEDYRKLfsa 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 82 ---------AYLPQQTAPAAGMLVRElvalgrypWhgaLGRFGATDRQKVEEaieltgigafaDRLVDT-LSGGERQRVW 151
Cdd:PRK10522 402 vftdfhlfdQLLGPEGKPANPALVEK--------W---LERLKMAHKLELED-----------GRISNLkLSKGQKKRLA 459
|
170
....*....|....*.
gi 1759772862 152 LAMLVAQDAECLLLDE 167
Cdd:PRK10522 460 LLLALAEERDILLLDE 475
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
20-219 |
4.17e-08 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 53.73 E-value: 4.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 20 LLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGgtvrFAGKALGDWGD--REFARKLAYLPQQTAPAAGMLVR 97
Cdd:PLN03211 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNN----FTGTILANNRKptKQILKRTGFVTQDDILYPHLTVR 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 98 E---LVALGRYPwhGALGRfgaTDRQKVEEAI---------ELTGIGafaDRLVDTLSGGERQRVWLAMLVAQDAECLLL 165
Cdd:PLN03211 159 EtlvFCSLLRLP--KSLTK---QEKILVAESViselgltkcENTIIG---NSFIRGISGGERKRVSIAHEMLINPSLLIL 230
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1759772862 166 DEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGR 219
Cdd:PLN03211 231 DEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGR 284
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
11-178 |
7.13e-08 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 52.16 E-value: 7.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 11 VTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTL----LKILARQQPVSGGTVRFAGKALGDWgdrefaRK-LAYLP 85
Cdd:cd03289 10 AKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLlsafLRLLNTEGDIQIDGVSWNSVPLQKW------RKaFGVIP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 86 QQTAPAAGMLVRELVALGRYpwhgalgrfgaTDRQ--KVEEAIEL-TGIGAFADR----LVD---TLSGGERQRVWLAML 155
Cdd:cd03289 84 QKVFIFSGTFRKNLDPYGKW-----------SDEEiwKVAEEVGLkSVIEQFPGQldfvLVDggcVLSHGHKQLMCLARS 152
|
170 180
....*....|....*....|....
gi 1759772862 156 VAQDAECLLLDEPTSALD-IAHQI 178
Cdd:cd03289 153 VLSKAKILLLDEPSAHLDpITYQV 176
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
136-230 |
7.29e-08 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 53.09 E-value: 7.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 136 DRLVDTLSGGERQRVWLAMLVAQDAECLL--LDEPTSALdiaHQIEVLSLVRKLSHEKDL--SVFVVLHDVNMaARFCDE 211
Cdd:TIGR00630 483 SRAAGTLSGGEAQRIRLATQIGSGLTGVLyvLDEPSIGL---HQRDNRRLINTLKRLRDLgnTLIVVEHDEDT-IRAADY 558
|
90 100
....*....|....*....|....*
gi 1759772862 212 VFAL------HSGRLIAQSTPKGIM 230
Cdd:TIGR00630 559 VIDIgpgageHGGEVVASGTPEEIL 583
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
110-222 |
9.00e-08 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 52.52 E-value: 9.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 110 ALGRFgaTDRQKVEEAIELTGIGAFADRL----------VDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIE 179
Cdd:TIGR02633 364 VLKSF--CFKMRIDAAAELQIIGSAIQRLkvktaspflpIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYE 441
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1759772862 180 VLSLVRKLSHEkDLSVFVVLHDVNMAARFCDEVFALHSGRLIA 222
Cdd:TIGR02633 442 IYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVIGEGKLKG 483
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
5-221 |
1.31e-07 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 52.10 E-value: 1.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 5 LFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILarqqpvSG--------GTVRFAGK--ALGDWGD 74
Cdd:NF040905 1 ILEMRGITKTFPGVKALDDVNLSVREGEIHALCGENGAGKSTLMKVL------SGvyphgsyeGEILFDGEvcRFKDIRD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 75 REfARKLAYLPQQTAPAAGMLVRELVALGRYPwhgalGRFGATDRQKV-EEAIEL---TGIGAFADRLVDTLSGGERQRV 150
Cdd:NF040905 75 SE-ALGIVIIHQELALIPYLSIAENIFLGNER-----AKRGVIDWNETnRRARELlakVGLDESPDTLVTDIGVGKQQLV 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1759772862 151 WLAMLVAQDAECLLLDEPTSAL---DIAHqieVLSLVRKLShEKDLSVFVVLHDVNMAARFCDEVFALHSGRLI 221
Cdd:NF040905 149 EIAKALSKDVKLLILDEPTAALneeDSAA---LLDLLLELK-AQGITSIIISHKLNEIRRVADSITVLRDGRTI 218
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
1-174 |
1.57e-07 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 50.80 E-value: 1.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 1 MTSALFELENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILArQQP---VSGGTVRFAGKALGDWGDREF 77
Cdd:CHL00131 3 KNKPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIA-GHPaykILEGDILFKGESILDLEPEER 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 78 ARKLAYLPQQtapaagmlvrelvalgrYPW------HGALGRFGATDRQK---------------VEEAIELTGIGA-FA 135
Cdd:CHL00131 82 AHLGIFLAFQ-----------------YPIeipgvsNADFLRLAYNSKRKfqglpeldplefleiINEKLKLVGMDPsFL 144
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1759772862 136 DRLV-DTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDI 174
Cdd:CHL00131 145 SRNVnEGFSGGEKKRNEILQMALLDSELAILDETDSGLDI 184
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
11-204 |
1.78e-07 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 50.01 E-value: 1.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 11 VTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLK-ILARQqpvsggtvrfAGKALGDWGDREFARKLAYLPQqta 89
Cdd:cd03238 1 LTVSGANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNeGLYAS----------GKARLISFLPKFSRNKLIFIDQ--- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 90 paagmlVRELVALGrypwhgaLGRfgatdrqkveeaieLTgigafADRLVDTLSGGERQRVWLAMLVAQDAE--CLLLDE 167
Cdd:cd03238 68 ------LQFLIDVG-------LGY--------------LT-----LGQKLSTLSGGELQRVKLASELFSEPPgtLFILDE 115
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1759772862 168 PTSAL---DIAHQIEVLSLVRKLSHekdlSVFVVLHDVNM 204
Cdd:cd03238 116 PSTGLhqqDINQLLEVIKGLIDLGN----TVILIEHNLDV 151
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
20-242 |
2.26e-07 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 51.39 E-value: 2.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 20 LLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQpvSGGTVRFAGKALGDWGDRE-FARKLAYLPQQTAPAAGMLVRE 98
Cdd:PLN03140 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYIEGDIRISGFPKKQEtFARISGYCEQNDIHSPQVTVRE 972
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 99 LV---ALGRYPWHgalgrfgATDRQK---VEEAIELTGIGAFADRLVDT-----LSGGERQRVWLAMLVAQDAECLLLDE 167
Cdd:PLN03140 973 SLiysAFLRLPKE-------VSKEEKmmfVDEVMELVELDNLKDAIVGLpgvtgLSTEQRKRLTIAVELVANPSIIFMDE 1045
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 168 PTSALDIAHQIEVLSLVRKlSHEKDLSVFVVLH--DVNMAARFcDEVFALHSGRLIAQSTPKG---IMVPERLEEIYGIP 242
Cdd:PLN03140 1046 PTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHqpSIDIFEAF-DELLLMKRGGQVIYSGPLGrnsHKIIEYFEAIPGVP 1123
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
136-230 |
2.51e-07 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 51.18 E-value: 2.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 136 DRLVDTLSGGERQRVWLA----------MLVaqdaecllLDEPTSALdiaHQ------IEVLslvRKLsheKDL--SVFV 197
Cdd:COG0178 480 DRSAGTLSGGEAQRIRLAtqigsglvgvLYV--------LDEPSIGL---HQrdndrlIETL---KRL---RDLgnTVIV 542
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1759772862 198 VLHD--VNMAArfcDEVFAL------HSGRLIAQSTPKGIM 230
Cdd:COG0178 543 VEHDedTIRAA---DYIIDIgpgageHGGEVVAQGTPEEIL 580
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
21-221 |
3.43e-07 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 50.17 E-value: 3.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 21 LQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKAL--GDWGDRefARKLAYLPQQtaPAAGMLVRE 98
Cdd:PRK15112 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLhfGDYSYR--SQRIRMIFQD--PSTSLNPRQ 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 99 LVA-LGRYPwhgaLGRFGATDRQKVEEAIELT--GIGAFADRLV---DTLSGGERQRVWLAMLVAQDAECLLLDEPTSAL 172
Cdd:PRK15112 105 RISqILDFP----LRLNTDLEPEQREKQIIETlrQVGLLPDHASyypHMLAPGQKQRLGLARALILRPKVIIADEALASL 180
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1759772862 173 DIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAARFCDEVFALHSGRLI 221
Cdd:PRK15112 181 DMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVV 229
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
41-230 |
4.09e-07 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 50.39 E-value: 4.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 41 GSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDRE-FARKLAYLPQQTAPAA---GMLVRE---LVALgRYPWHGALGR 113
Cdd:PRK10762 288 GAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDgLANGIVYISEDRKRDGlvlGMSVKEnmsLTAL-RYFSRAGGSL 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 114 FGATDRQKVEEAIELTGIGA-FADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEkD 192
Cdd:PRK10762 367 KHADEQQAVSDFIRLFNIKTpSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-G 445
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1759772862 193 LSVFVVLHDVNMAARFCDEVFALHSGRL-----IAQSTPKGIM 230
Cdd:PRK10762 446 LSIILVSSEMPEVLGMSDRILVMHEGRIsgeftREQATQEKLM 488
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
21-226 |
9.07e-07 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 48.76 E-value: 9.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 21 LQPLTMSIPVGSLTALIGHNGSGKSTLL-----KILARQQPVSGGTVrfagKALGDWGDREFARKLAYLPQ-------QT 88
Cdd:cd03271 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLIndtlyPALARRLHLKKEQP----GNHDRIEGLEHIDKVIVIDQspigrtpRS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 89 APA----AGMLVREL---VALGRypwhgalgRFgatDRQ-----------------KVEEAIEL----TGIGAFADRLVD 140
Cdd:cd03271 87 NPAtytgVFDEIRELfceVCKGK--------RY---NREtlevrykgksiadvldmTVEEALEFfeniPKIARKLQTLCD 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 141 -------------TLSGGERQRVWLAMLVAQDAE---CLLLDEPTSAL---DIAHQIEVL-SLVrklshEKDLSVFVVLH 200
Cdd:cd03271 156 vglgyiklgqpatTLSGGEAQRIKLAKELSKRSTgktLYILDEPTTGLhfhDVKKLLEVLqRLV-----DKGNTVVVIEH 230
|
250 260 270
....*....|....*....|....*....|..
gi 1759772862 201 DVNMaARFCDEVFAL------HSGRLIAQSTP 226
Cdd:cd03271 231 NLDV-IKCADWIIDLgpeggdGGGQVVASGTP 261
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
36-179 |
1.85e-06 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 48.62 E-value: 1.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 36 LIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYLPQ-----------------QTAPAAGMLVRE 98
Cdd:PTZ00243 1341 IVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQdpvlfdgtvrqnvdpflEASSAEVWAALE 1420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 99 LVALgrypwhgalgrfgatdRQKVeeAIELTGIGAFADRLVDTLSGGERQRVWLA-MLVAQDAECLLLDEPTSALDIA-- 175
Cdd:PTZ00243 1421 LVGL----------------RERV--ASESEGIDSRVLEGGSNYSVGQRQLMCMArALLKKGSGFILMDEATANIDPAld 1482
|
....
gi 1759772862 176 HQIE 179
Cdd:PTZ00243 1483 RQIQ 1486
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
31-213 |
2.73e-06 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 45.83 E-value: 2.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 31 GSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGkalgdwgdrefarklaylpqqtapaagmlvrelvalgrypwhga 110
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYID-------------------------------------------- 37
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 111 lgrfGATDRQKVEEAIELTGIGafadRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVR----- 185
Cdd:smart00382 38 ----GEDILEEVLDQLLLIIVG----GKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEElrlll 109
|
170 180 190
....*....|....*....|....*....|....
gi 1759772862 186 KLSHEKDLSVFVVLHDV------NMAARFCDEVF 213
Cdd:smart00382 110 LLKSEKNLTVILTTNDEkdlgpaLLRRRFDRRIV 143
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
136-230 |
3.38e-06 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 47.76 E-value: 3.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 136 DRLVDTLSGGERQRVWLA----------MLVaqdaecllLDEPTSALdiaHQIEVLSLVRKLSHEKDL--SVFVVLHD-- 201
Cdd:PRK00349 484 SRSAGTLSGGEAQRIRLAtqigsgltgvLYV--------LDEPSIGL---HQRDNDRLIETLKHLRDLgnTLIVVEHDed 552
|
90 100 110
....*....|....*....|....*....|....*
gi 1759772862 202 VNMAArfcDEVFAL------HSGRLIAQSTPKGIM 230
Cdd:PRK00349 553 TIRAA---DYIVDIgpgagvHGGEVVASGTPEEIM 584
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
23-225 |
4.63e-06 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 45.43 E-value: 4.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 23 PLTMSIPVGSLTALIGHNGSGKSTLLKILArqqpvsggtvrfagkalgdwgdrefarklaylpqqtapaagmlvreLVAL 102
Cdd:cd03227 13 PNDVTFGEGSLTIITGPNGSGKSTILDAIG----------------------------------------------LALG 46
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 103 GRYPwhgALGRFGATDRQKVEEAIELTGIGafadrLVDTLSGGERQRVWLAMLVA----QDAECLLLDEPTSALDIAHQI 178
Cdd:cd03227 47 GAQS---ATRRRSGVKAGCIVAAVSAELIF-----TRLQLSGGEKELSALALILAlaslKPRPLYILDEIDRGLDPRDGQ 118
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1759772862 179 EVLSLVRKLShEKDLSVFVVLHDVNMAARFcdeVFALHSGRLIAQST 225
Cdd:cd03227 119 ALAEAILEHL-VKGAQVIVITHLPELAELA---DKLIHIKKVITGVY 161
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
6-198 |
4.99e-06 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 47.21 E-value: 4.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 6 FELENVtfsaAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALgdwgdrEFARklaylP 85
Cdd:PRK11288 258 LRLDGL----KGPGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPI------DIRS-----P 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 86 QQtAPAAGML----------------VRELVALGRYPWHGALGRF--GATDRQKVEEAIELTGI-GAFADRLVDTLSGGE 146
Cdd:PRK11288 323 RD-AIRAGIMlcpedrkaegiipvhsVADNINISARRHHLRAGCLinNRWEAENADRFIRSLNIkTPSREQLIMNLSGGN 401
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1759772862 147 RQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLShEKDLSVFVV 198
Cdd:PRK11288 402 QQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELA-AQGVAVLFV 452
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
136-223 |
8.59e-06 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 45.71 E-value: 8.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 136 DRLVDTLSGGERQRVWLAMLVAQDAECLL--LDEPTSALdiaHQIEVLSLVRKLSHEKDL--SVFVVLHDVNMaARFCDE 211
Cdd:cd03270 132 SRSAPTLSGGEAQRIRLATQIGSGLTGVLyvLDEPSIGL---HPRDNDRLIETLKRLRDLgnTVLVVEHDEDT-IRAADH 207
|
90
....*....|....*...
gi 1759772862 212 VFAL------HSGRLIAQ 223
Cdd:cd03270 208 VIDIgpgagvHGGEIVAQ 225
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
110-223 |
9.51e-06 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 46.46 E-value: 9.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 110 ALGRFgaTDRQKVEEAIELTGIGAFADRL----------VDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIE 179
Cdd:PRK13549 366 ALDRF--TGGSRIDDAAELKTILESIQRLkvktaspelaIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYE 443
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1759772862 180 VLSLVRKLSHEkDLSVFVVLHDVNMAARFCDEVFALHSGRLIAQ 223
Cdd:PRK13549 444 IYKLINQLVQQ-GVAIIVISSELPEVLGLSDRVLVMHEGKLKGD 486
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
8-198 |
1.05e-05 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 46.16 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 8 LENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGG--------TVRFAGKALGDWGDREFAR 79
Cdd:PRK10938 6 ISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGerqsqfshITRLSFEQLQKLVSDEWQR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 80 KLAYLPQQTAPAAGMLVRELVALGrypwhgalgrfgATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQD 159
Cdd:PRK10938 86 NNTDMLSPGEDDTGRTTAEIIQDE------------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSE 153
|
170 180 190
....*....|....*....|....*....|....*....
gi 1759772862 160 AECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVV 198
Cdd:PRK10938 154 PDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVL 192
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
137-209 |
1.63e-05 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 44.52 E-value: 1.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 137 RLVDTLSGGERQ------RVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLS-LVRKLSHEKDLSVFVVLHD---VNMAA 206
Cdd:cd03240 111 DMRGRCSGGEKVlasliiRLALAETFGSNCGILALDEPTTNLDEENIEESLAeIIEERKSQKNFQLIVITHDeelVDAAD 190
|
...
gi 1759772862 207 RFC 209
Cdd:cd03240 191 HIY 193
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
36-174 |
1.85e-05 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 45.27 E-value: 1.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 36 LIGHNGSGKSTLLKILARQQPVSGGTVRF-AGKALGDWGDREFA-----------------------RKLAY-LPQQTAp 90
Cdd:PRK15064 32 LIGANGCGKSTFMKILGGDLEPSAGNVSLdPNERLGKLRQDQFAfeeftvldtvimghtelwevkqeRDRIYaLPEMSE- 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 91 AAGMLVREL-VALGRYPWHGALGRFGATdrqkveeaieLTGIGAFADR---LVDTLSGGERQRVWLAMLVAQDAECLLLD 166
Cdd:PRK15064 111 EDGMKVADLeVKFAEMDGYTAEARAGEL----------LLGVGIPEEQhygLMSEVAPGWKLRVLLAQALFSNPDILLLD 180
|
....*...
gi 1759772862 167 EPTSALDI 174
Cdd:PRK15064 181 EPTNNLDI 188
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
8-174 |
3.97e-05 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 44.47 E-value: 3.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 8 LENVTFSAAGHVLLQPLTMSIPVGSLTALIGHNGSGKSTLLK---------------ILARQQPVSGGTVRFAGKALGdw 72
Cdd:PLN03073 180 MENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRymamhaidgipkncqILHVEQEVVGDDTTALQCVLN-- 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 73 GDREFARKLAYLPQQTAPAAGMLVRELVALGRYPWHGALGRFGATDR----QKVEEAIE-----------LTGIGAFAD- 136
Cdd:PLN03073 258 TDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRleeiYKRLELIDaytaearaasiLAGLSFTPEm 337
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1759772862 137 --RLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDI 174
Cdd:PLN03073 338 qvKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDL 377
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
122-202 |
4.29e-05 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 44.63 E-value: 4.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 122 VEEAIEL-TGIGAFADR---LVD-------------TLSGGERQRVWLAmlvaqdAEcL----------LLDEPTSAL-- 172
Cdd:COG0178 790 VEEALEFfENIPKIARKlqtLQDvglgyiklgqpatTLSGGEAQRVKLA------SE-LskrstgktlyILDEPTTGLhf 862
|
90 100 110
....*....|....*....|....*....|....
gi 1759772862 173 -DIAHQIEVL-SLVrklshEKDLSVFVVLH--DV 202
Cdd:COG0178 863 hDIRKLLEVLhRLV-----DKGNTVVVIEHnlDV 891
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
141-226 |
4.65e-05 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 44.23 E-value: 4.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 141 TLSGGERQRVWLAM-LVAQDAECLL--LDEPTSAL---DIAHQIEVL-SLVrklshEKDLSVFVVLH--DVNMAArfcDE 211
Cdd:TIGR00630 829 TLSGGEAQRIKLAKeLSKRSTGRTLyiLDEPTTGLhfdDIKKLLEVLqRLV-----DKGNTVVVIEHnlDVIKTA---DY 900
|
90 100
....*....|....*....|.
gi 1759772862 212 VFAL------HSGRLIAQSTP 226
Cdd:TIGR00630 901 IIDLgpeggdGGGTVVASGTP 921
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
21-234 |
4.67e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 44.34 E-value: 4.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 21 LQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQQPVSGGTVRFAGKALGDWGDREFARKLAYLPQQTAPAAGMlVRelV 100
Cdd:PLN03130 1255 LHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGT-VR--F 1331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 101 ALGRYPWHGALGRFGATDRQKVEEAIELTGIGAFADRLV--DTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQi 178
Cdd:PLN03130 1332 NLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEagENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTD- 1410
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1759772862 179 evlSLVRKLSHE--KDLSVFVVLHDVNMAARfCDEVFALHSGRLIAQSTPKGIMVPER 234
Cdd:PLN03130 1411 ---ALIQKTIREefKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLSNEG 1464
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
113-207 |
7.81e-05 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 43.86 E-value: 7.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 113 RFGATD--RQKVEEAIELTGIGAFADRL---VDT--------LSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIE 179
Cdd:PTZ00265 1317 KFGKEDatREDVKRACKFAAIDEFIESLpnkYDTnvgpygksLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKL 1396
|
90 100
....*....|....*....|....*...
gi 1759772862 180 VLSLVRKLSHEKDLSVFVVLHDVNMAAR 207
Cdd:PTZ00265 1397 IEKTIVDIKDKADKTIITIAHRIASIKR 1424
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
119-222 |
8.49e-05 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 43.19 E-value: 8.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 119 RQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEkDLSVFVV 198
Cdd:NF000106 122 RARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRD-GATVLLT 200
|
90 100
....*....|....*....|....
gi 1759772862 199 LHDVNMAARFCDEVFALHSGRLIA 222
Cdd:NF000106 201 TQYMEEAEQLAHELTVIDRGRVIA 224
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
137-227 |
8.74e-05 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 43.66 E-value: 8.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 137 RLVDTLSGGERQRVWLA--MLVAQDAECL-LLDEPTSAL---DIAHQIEVLSLVRKLSHekdlSVFVVLHDVNMaARFCD 210
Cdd:PRK00635 805 RPLSSLSGGEIQRLKLAyeLLAPSKKPTLyVLDEPTTGLhthDIKALIYVLQSLTHQGH----TVVIIEHNMHV-VKVAD 879
|
90 100
....*....|....*....|...
gi 1759772862 211 EVFAL------HSGRLIAQSTPK 227
Cdd:PRK00635 880 YVLELgpeggnLGGYLLASCSPE 902
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
9-220 |
8.88e-05 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 42.88 E-value: 8.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 9 ENVTFSAaghvlLQPLTMSIPVGSLTALIGHNGSGKSTLLKILarqqpvsGGTVRFAGKALGDWGDREFARKLAYLPQQT 88
Cdd:PRK13546 33 KNKTFFA-----LDDISLKAYEGDVIGLVGINGSGKSTLSNII-------GGSLSPTVGKVDRNGEVSVIAISAGLSGQL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 89 ApaaGMLVRELVALgrypwhgALGRFGATDRQKVEEAIELTGIGAFADRLVDTLSGGERQRVWLAMLVAQDAECLLLDEP 168
Cdd:PRK13546 101 T---GIENIEFKML-------CMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEA 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1759772862 169 TSALDIAHQIEVLSLVRKLShEKDLSVFVVLHDVNMAARFCDEVFALHSGRL 220
Cdd:PRK13546 171 LSVGDQTFAQKCLDKIYEFK-EQNKTIFFVSHNLGQVRQFCTKIAWIEGGKL 221
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
20-221 |
9.01e-05 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 43.56 E-value: 9.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 20 LLQPLTMSIPVGSLTALIGHNGSGKSTLLKILARQ----QPVSGGTVRFAGKALGDWgDREFARKLAYLPQQTAPAAGML 95
Cdd:TIGR00956 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNtdgfHIGVEGVITYDGITPEEI-KKHYRGDVVYNAETDVHFPHLT 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 96 VRE---LVALGRYPWHgalgRFGATDRQKVEEAIELTGIGAFA----------DRLVDTLSGGERQRVWLAMLVAQDAEC 162
Cdd:TIGR00956 155 VGEtldFAARCKTPQN----RPDGVSREEYAKHIADVYMATYGlshtrntkvgNDFVRGVSGGERKRVSIAEASLGGAKI 230
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 163 LLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNMAA-RFCDEVFALHSGRLI 221
Cdd:TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAyELFDKVIVLYEGYQI 290
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
141-202 |
9.58e-05 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 43.52 E-value: 9.58e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1759772862 141 TLSGGERQRVWLAmlvaqdAEcL----------LLDEPTSAL---DIAHQIEVL-SLVrklshEKDLSVFVVLH--DV 202
Cdd:PRK00349 830 TLSGGEAQRVKLA------KE-LskrstgktlyILDEPTTGLhfeDIRKLLEVLhRLV-----DKGNTVVVIEHnlDV 895
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
142-215 |
3.07e-04 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 41.94 E-value: 3.07e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1759772862 142 LSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHEKDLSVFVVLHDVNmAARFCDEVFAL 215
Cdd:PTZ00265 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLS-TIRYANTIFVL 652
|
|
| COG4637 |
COG4637 |
Predicted ATPase [General function prediction only]; |
28-52 |
6.01e-04 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443675 [Multi-domain] Cd Length: 371 Bit Score: 40.68 E-value: 6.01e-04
10 20
....*....|....*....|....*
gi 1759772862 28 IPVGSLTALIGHNGSGKSTLLKILA 52
Cdd:COG4637 18 LPLGPLTVLIGANGSGKSNLLDALR 42
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
136-212 |
6.57e-04 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 40.97 E-value: 6.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 136 DRLVDTLSGGERQRVWLAMLVAqdAECL----LLDEPTSALDIAHQIEVLSLVRKLSHEKDlSVFVVLHDVNMAArFCDE 211
Cdd:PRK00635 471 ERALATLSGGEQERTALAKHLG--AELIgityILDEPSIGLHPQDTHKLINVIKKLRDQGN-TVLLVEHDEQMIS-LADR 546
|
.
gi 1759772862 212 V 212
Cdd:PRK00635 547 I 547
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
140-204 |
6.76e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 40.73 E-value: 6.76e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1759772862 140 DTLSGGERQRVWLAMLVA---QDAECL-LLDEPTSALDIAHQIEVLSLVRKLSheKDLSVFVVLHDVNM 204
Cdd:pfam02463 1076 DLLSGGEKTLVALALIFAiqkYKPAPFyLLDEIDAALDDQNVSRVANLLKELS--KNAQFIVISLREEM 1142
|
|
| COG4938 |
COG4938 |
Predicted ATPase [General function prediction only]; |
27-51 |
7.49e-04 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443965 [Multi-domain] Cd Length: 277 Bit Score: 39.95 E-value: 7.49e-04
10 20
....*....|....*....|....*
gi 1759772862 27 SIPVGSLTALIGHNGSGKSTLLKIL 51
Cdd:COG4938 16 ELELKPLTLLIGPNGSGKSTLIQAL 40
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
21-54 |
1.34e-03 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 39.67 E-value: 1.34e-03
10 20 30
....*....|....*....|....*....|....*....
gi 1759772862 21 LQPLTMSIPVGSLTALIGHNGSGKSTLL-----KILARQ 54
Cdd:PRK00349 625 LKNVDVEIPLGKFTCVTGVSGSGKSTLInetlyKALARK 663
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
141-220 |
1.61e-03 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 39.33 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 141 TLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLShEKDLSVFVVLHDVNMAARFCDEVFALHSGRL 220
Cdd:PRK10982 391 SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELA-KKDKGIIIISSEMPELLGITDRILVMSNGLV 469
|
|
| COG3950 |
COG3950 |
Predicted ATP-binding protein involved in virulence [General function prediction only]; |
33-52 |
2.06e-03 |
|
Predicted ATP-binding protein involved in virulence [General function prediction only];
Pssm-ID: 443150 [Multi-domain] Cd Length: 276 Bit Score: 38.83 E-value: 2.06e-03
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
33-52 |
2.46e-03 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 38.52 E-value: 2.46e-03
|
| AAA_15 |
pfam13175 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
33-51 |
2.90e-03 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433011 [Multi-domain] Cd Length: 392 Bit Score: 38.35 E-value: 2.90e-03
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
143-200 |
3.36e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 38.46 E-value: 3.36e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1759772862 143 SGGERQRVWLAML-----VAQ-----DAECLLLDEP-TSALDIAHQIEVLSLVRKLsheKDLSVFVVLH 200
Cdd:PHA02562 470 SQGEKARIDLALLftwrdVASkvsgvDTNLLILDEVfDGALDAEGTKALLSILDSL---KDTNVFVISH 535
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
139-173 |
4.06e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 38.34 E-value: 4.06e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 1759772862 139 VDTLSGGERQRVWLAMLVA------QDAECLLLDEPTSALD 173
Cdd:PRK01156 799 IDSLSGGEKTAVAFALRVAvaqflnNDKSLLIMDEPTAFLD 839
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
139-230 |
4.08e-03 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 38.23 E-value: 4.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759772862 139 VDTLSGGERQRVWLAMLVAQDAECLLLDEPTSALDIAHQIEVLSLVRKLSHE-KdlSVFVVLHDVNMAARFCDEVFALHS 217
Cdd:NF040905 402 VGNLSGGNQQKVVLSKWLFTDPDVLILDEPTRGIDVGAKYEIYTIINELAAEgK--GVIVISSELPELLGMCDRIYVMNE 479
|
90
....*....|....*...
gi 1759772862 218 GRL-----IAQSTPKGIM 230
Cdd:NF040905 480 GRItgelpREEASQERIM 497
|
|
| COG3910 |
COG3910 |
Predicted ATPase [General function prediction only]; |
21-61 |
4.65e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443116 [Multi-domain] Cd Length: 239 Bit Score: 37.44 E-value: 4.65e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1759772862 21 LQPLTMSIPVgslTALIGHNGSGKSTLLKILARQQ--PVSGGT 61
Cdd:COG3910 30 LEGLEFHPPV---TFFVGENGSGKSTLLEAIAVAAgfNPEGGS 69
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
21-54 |
5.13e-03 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 38.08 E-value: 5.13e-03
10 20 30
....*....|....*....|....*....|....*....
gi 1759772862 21 LQPLTMSIPVGSLTALIGHNGSGKSTLL-----KILARQ 54
Cdd:COG0178 621 LKNVDVEIPLGVLTCVTGVSGSGKSTLVndilyPALARK 659
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
27-53 |
5.79e-03 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 37.67 E-value: 5.79e-03
10 20
....*....|....*....|....*...
gi 1759772862 27 SIPVGS-LTALIGHNGSGKSTLLKILAR 53
Cdd:COG3593 18 SIELSDdLTVLVGENNSGKSSILEALRL 45
|
|
| AAA_29 |
pfam13555 |
P-loop containing region of AAA domain; |
25-48 |
7.70e-03 |
|
P-loop containing region of AAA domain;
Pssm-ID: 433304 [Multi-domain] Cd Length: 61 Bit Score: 34.11 E-value: 7.70e-03
|
| |
