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Conserved domains on  [gi|1759812660|gb|KAB2793867|]
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type II and III secretion system protein family protein [Brucella anthropi]

Protein Classification

type II and III secretion system protein family protein( domain architecture ID 11471920)

type II and III secretion system protein family protein similar to Sinorhizobium fredii Y4xJ

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CpaC COG4964
Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular ...
 5-507 2.28e-177

Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


:

Pssm-ID: 443990 [Multi-domain]  Cd Length: 456  Bit Score: 506.33  E-value: 2.28e-177
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660   5 KRVRPYSAKVALLTSALAAFSLPltdmsaMAAAGIVKVGSQQRSQTIKLGLNKSVVLDLPQDAYDVLVSNPTIADAVTRT 84
Cdd:COG4964     2 KRRLRRLLAAALLALALLALAAP------APAQAAVRVSDAAAARTLSLGVGKSRVLELPRPIKRVAVGNPEIADVVVLS 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660  85 SRRIYLFGKQVGQTNIFVFGPNGEQVASINVEIERDVSGISSQLKRLIPGSDIRVELINDNVVLTGTVQTPQDSAQAAKL 164
Cdd:COG4964    76 PRELYVFGKKPGTTTLTVWDADGRQIASLDVRVGRDLAGLRERLRRLLPGEGIRVRAVGDRVVLSGTVSSAADADRAVDL 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 165 AGLFVSGGEattgqftttasaptdgggvainnpdrnrrasaIVNMLTIVGEDQVTLKVTVAEVSRSVMKQLGVNMAGSGV 244
Cdd:COG4964   156 AEAYAGGGK--------------------------------VINLLTVGGPQQVMLKVRVAEVSRSVLKQLGINWSGLGS 203

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 245 SNGISYGGISESIAGAIGNNLSD---TGFGLATSNFSAYLRAMESAGVMKTLAEPTLTAISGEKAAFNVGGEYNVINSvk 321
Cdd:COG4964   204 SGGFSFGLLTGGLLSGLLGGATAgafSGFGFGNASISATLDALEQNGLARVLAEPNLTALSGETASFLAGGEFPIPVA-- 281

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 322 yDDDGKRTNElaKINYGIGLEFMPTVLGPGRISLKIRTSVSEPTTEGAGTTNkmdgvGASVLSLRKRVADTTVELPSGGS 401
Cdd:COG4964   282 -QGDGTITVE--YKEFGVSLNFTPTVLSNGRISLKVAPEVSELDPSNAVTLN-----GITIPGLTTRRAETTVELRSGQS 353

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 402 MMIGGLIRDEVRQSVSGFPGLTKIPVLGALFRSKDFIRNESELVVIVTPYLARPVARQQLARPDDNLNPASDGAGYILGK 481
Cdd:COG4964   354 FAIAGLLSSNTRQNVSKVPGLGDIPILGALFRSRSFQRNETELVIIVTPYLVKPVSPEALALPTDRFRPPSDLELFLLGR 433

                         490       500
                  ....*....|....*....|....*.
gi 1759812660 482 VNRVYGTMETKLPPgryNGVVGYIYK 507
Cdd:COG4964   434 LERPYPTPAAETAA---QGSYGFILD 456
 
Name Accession Description Interval E-value
CpaC COG4964
Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular ...
 5-507 2.28e-177

Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443990 [Multi-domain]  Cd Length: 456  Bit Score: 506.33  E-value: 2.28e-177
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660   5 KRVRPYSAKVALLTSALAAFSLPltdmsaMAAAGIVKVGSQQRSQTIKLGLNKSVVLDLPQDAYDVLVSNPTIADAVTRT 84
Cdd:COG4964     2 KRRLRRLLAAALLALALLALAAP------APAQAAVRVSDAAAARTLSLGVGKSRVLELPRPIKRVAVGNPEIADVVVLS 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660  85 SRRIYLFGKQVGQTNIFVFGPNGEQVASINVEIERDVSGISSQLKRLIPGSDIRVELINDNVVLTGTVQTPQDSAQAAKL 164
Cdd:COG4964    76 PRELYVFGKKPGTTTLTVWDADGRQIASLDVRVGRDLAGLRERLRRLLPGEGIRVRAVGDRVVLSGTVSSAADADRAVDL 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 165 AGLFVSGGEattgqftttasaptdgggvainnpdrnrrasaIVNMLTIVGEDQVTLKVTVAEVSRSVMKQLGVNMAGSGV 244
Cdd:COG4964   156 AEAYAGGGK--------------------------------VINLLTVGGPQQVMLKVRVAEVSRSVLKQLGINWSGLGS 203

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 245 SNGISYGGISESIAGAIGNNLSD---TGFGLATSNFSAYLRAMESAGVMKTLAEPTLTAISGEKAAFNVGGEYNVINSvk 321
Cdd:COG4964   204 SGGFSFGLLTGGLLSGLLGGATAgafSGFGFGNASISATLDALEQNGLARVLAEPNLTALSGETASFLAGGEFPIPVA-- 281

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 322 yDDDGKRTNElaKINYGIGLEFMPTVLGPGRISLKIRTSVSEPTTEGAGTTNkmdgvGASVLSLRKRVADTTVELPSGGS 401
Cdd:COG4964   282 -QGDGTITVE--YKEFGVSLNFTPTVLSNGRISLKVAPEVSELDPSNAVTLN-----GITIPGLTTRRAETTVELRSGQS 353

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 402 MMIGGLIRDEVRQSVSGFPGLTKIPVLGALFRSKDFIRNESELVVIVTPYLARPVARQQLARPDDNLNPASDGAGYILGK 481
Cdd:COG4964   354 FAIAGLLSSNTRQNVSKVPGLGDIPILGALFRSRSFQRNETELVIIVTPYLVKPVSPEALALPTDRFRPPSDLELFLLGR 433

                         490       500
                  ....*....|....*....|....*.
gi 1759812660 482 VNRVYGTMETKLPPgryNGVVGYIYK 507
Cdd:COG4964   434 LERPYPTPAAETAA---QGSYGFILD 456
Secretin pfam00263
Bacterial type II and III secretion system protein;
283-452 4.51e-38

Bacterial type II and III secretion system protein;


Pssm-ID: 459738 [Multi-domain]  Cd Length: 159  Bit Score: 136.88  E-value: 4.51e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 283 AMESAGVMKTLAEPTLTAISGEKAAFNVGGEYNVInsVKYDDDGKRTNELAKINYGIGLEFMPTVLGPGRISLKIRTSVS 362
Cdd:pfam00263   1 ALEQNGKAKILSSPSLLTLDNQEASIKVGQEVPVP--TTSTTGGTTTTTVEFKDAGLSLKVTPQVTPDGTITLKINPEVS 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 363 EPTTegagttnkmdGVGASVLSLRKRVADTTVELPSGGSMMIGGLIRDEVRQSVSGFPGLTKIPVLGALFRSKDFIRNES 442
Cdd:pfam00263  79 SPDG----------NGGNGVPTINTREISTTVRVKDGQTVVIGGLIQEEDSETESKVPLLGDIPLLGALFRSTSKSKEKT 148

                         170
                  ....*....|
gi 1759812660 443 ELVVIVTPYL 452
Cdd:pfam00263 149 ELLIFITPRI 158
type_II_gspD TIGR02517
type II secretion system protein D; In Gram-negative bacteria, proteins that have first ...
 147-454 3.39e-27

type II secretion system protein D; In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274175 [Multi-domain]  Cd Length: 594  Bit Score: 115.18  E-value: 3.39e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 147 VLTGTVQTPQDSAQAAKLAGLFVSGGEATTGQFTTTASAPTDGGGVAINNPDRNRRASAIVNMLTIVGE-----DQVTLK 221
Cdd:TIGR02517 256 VFGGGGNEPGSSSSPGLGGAVNPGGSQSAQAASSASGGSVSGSADKATNSLIITASPQDYKNIRAVIKQldvrrAQVLVE 335

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 222 VTVAEVSRSVMKQLGVNMAGSGVSNGISYG---GISESIAGAIGN--NLSDTGFGLATS---------------NFSAYL 281
Cdd:TIGR02517 336 AIIVEVSLDDALELGVQWLIAGTGGGVNFStgsPNSGSLLGASASaiSLGSAGIGLLVTsssttsgvggtgggpNLGVLL 415

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 282 RAMESAGVMKTLAEPTLTAISGEKAAFNVGGEY----NVINSVKYDDDGKRTNELAKINYGIGLEFMPTVLGPGRISLKI 357
Cdd:TIGR02517 416 NALKQDTGFNVLSTPSLLTLDNQEAEINVGQEVpvltGSYNTGTGGTNANPFNTYQRKDVGIKLKVTPQINEGGTVRLEI 495

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 358 RTSVSEPtteGAGTTnkmdGVGASVLSLRKRVADTTVELPSGGSMMIGGLIRDEVRQSVSGFPGLTKIPVLGALFRSKDF 437
Cdd:TIGR02517 496 YQEVSSV---APTTV----GSAASGPTFNKREIKTVVLVDNGDTVVLGGLIQDKTSESVTKVPLLGDIPVLGWLFRSTTT 568

                         330
                  ....*....|....*..
gi 1759812660 438 IRNESELVVIVTPYLAR 454
Cdd:TIGR02517 569 ERTKTNLMVFITPRIIR 585
IV PHA00019
phage assembly protein
 213-454 4.74e-21

phage assembly protein


Pssm-ID: 222772 [Multi-domain]  Cd Length: 428  Bit Score: 95.27  E-value: 4.74e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 213 VGEDQVTLKVTVAEVSRS----VMKQLGVNmAGSGVSNGISyggisesiAGAIGNNLSDTG--FGLATSN-FSAYLRAME 285
Cdd:PHA00019  194 VPRRQVLIEALIFETSLGdgvdLSFAAGLA-SGGKVAGGFN--------TARLTTVLSSAGgsFGIFNGNvLGLSVKALE 264

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 286 SAGVMKTLAEPTLTAISGEKAAFNVGGEYNVINsvkydddGKRTNELAKIN----------YGIGLEFMPTVLGPGRISL 355
Cdd:PHA00019  265 NSSNSRVLSRPRILTLSGQSGYISVGQNVPFVT-------GRVTGEAANVNnpfqtierkdVGVSLEVTPVVMGDGQLVL 337

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 356 KIRTSVSEPTtegagttnkmDGVGASVLSLRKRVADTTVELPSGGSMMIGGLIRDEVRQSVSGFPGLTKIPVLGALFRSK 435
Cdd:PHA00019  338 DIDTKADSLS----------DSTIASDIITNQRSLQTTVQVKDGQTLLLGGLISSNNTDGDSSVPFLSKIPLIGWLFRSK 407

                         250
                  ....*....|....*....
gi 1759812660 436 DFIRNESELVVIVTPYLAR 454
Cdd:PHA00019  408 SDSNEQRTLYVLLTARVIK 426
 
Name Accession Description Interval E-value
CpaC COG4964
Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular ...
 5-507 2.28e-177

Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443990 [Multi-domain]  Cd Length: 456  Bit Score: 506.33  E-value: 2.28e-177
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660   5 KRVRPYSAKVALLTSALAAFSLPltdmsaMAAAGIVKVGSQQRSQTIKLGLNKSVVLDLPQDAYDVLVSNPTIADAVTRT 84
Cdd:COG4964     2 KRRLRRLLAAALLALALLALAAP------APAQAAVRVSDAAAARTLSLGVGKSRVLELPRPIKRVAVGNPEIADVVVLS 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660  85 SRRIYLFGKQVGQTNIFVFGPNGEQVASINVEIERDVSGISSQLKRLIPGSDIRVELINDNVVLTGTVQTPQDSAQAAKL 164
Cdd:COG4964    76 PRELYVFGKKPGTTTLTVWDADGRQIASLDVRVGRDLAGLRERLRRLLPGEGIRVRAVGDRVVLSGTVSSAADADRAVDL 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 165 AGLFVSGGEattgqftttasaptdgggvainnpdrnrrasaIVNMLTIVGEDQVTLKVTVAEVSRSVMKQLGVNMAGSGV 244
Cdd:COG4964   156 AEAYAGGGK--------------------------------VINLLTVGGPQQVMLKVRVAEVSRSVLKQLGINWSGLGS 203

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 245 SNGISYGGISESIAGAIGNNLSD---TGFGLATSNFSAYLRAMESAGVMKTLAEPTLTAISGEKAAFNVGGEYNVINSvk 321
Cdd:COG4964   204 SGGFSFGLLTGGLLSGLLGGATAgafSGFGFGNASISATLDALEQNGLARVLAEPNLTALSGETASFLAGGEFPIPVA-- 281

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 322 yDDDGKRTNElaKINYGIGLEFMPTVLGPGRISLKIRTSVSEPTTEGAGTTNkmdgvGASVLSLRKRVADTTVELPSGGS 401
Cdd:COG4964   282 -QGDGTITVE--YKEFGVSLNFTPTVLSNGRISLKVAPEVSELDPSNAVTLN-----GITIPGLTTRRAETTVELRSGQS 353

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 402 MMIGGLIRDEVRQSVSGFPGLTKIPVLGALFRSKDFIRNESELVVIVTPYLARPVARQQLARPDDNLNPASDGAGYILGK 481
Cdd:COG4964   354 FAIAGLLSSNTRQNVSKVPGLGDIPILGALFRSRSFQRNETELVIIVTPYLVKPVSPEALALPTDRFRPPSDLELFLLGR 433

                         490       500
                  ....*....|....*....|....*.
gi 1759812660 482 VNRVYGTMETKLPPgryNGVVGYIYK 507
Cdd:COG4964   434 LERPYPTPAAETAA---QGSYGFILD 456
PulD COG1450
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, ...
 197-460 1.04e-46

Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441059 [Multi-domain]  Cd Length: 333  Bit Score: 165.48  E-value: 1.04e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 197 PDRNRRASAIVNMLTIVgEDQVTLKVTVAEVSRSVMKQLGVNMAGSGVSNGISYGGISESIAGAIGNNLSDTGFGLA--- 273
Cdd:COG1450    61 PEQLREIEELIEQLDVP-RRQVLIEAKIVEVSLSDLRELGIDWSALGGNGGGVNFGGTGSLGSLAAAGSLGGGLNLGllg 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 274 TSNFSAYLRAMESAGVMKTLAEPTLTAISGEKAAFNVGGEYNVI-NSVKYDDDGKRTNELAKINYGIGLEFMPTVLGPGR 352
Cdd:COG1450   140 GGNFGALLNALESNGDANVLSSPSILTLNNQEAVIKVGQTVPYVtGSTTTSSTGNPTTTIEYVDVGITLKVTPQINEDGT 219

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 353 ISLKIRTSVSEPTTEGAGTTNkmdgvgaSVLSLRKRVADTTVELPSGGSMMIGGLIRDEVRQSVSGFPGLTKIPVLGALF 432
Cdd:COG1450   220 VTLDINPEVSSVTGSTTGGGN-------GLPTINKREISTTVRVKDGQTVVLGGLIRDEESESESKVPLLGDIPLLGRLF 292

                         250       260
                  ....*....|....*....|....*...
gi 1759812660 433 RSKDFIRNESELVVIVTPYLARPVARQQ 460
Cdd:COG1450   293 RSTSKSKEKTELVIFITPTIIRDGEDAQ 320
Secretin pfam00263
Bacterial type II and III secretion system protein;
283-452 4.51e-38

Bacterial type II and III secretion system protein;


Pssm-ID: 459738 [Multi-domain]  Cd Length: 159  Bit Score: 136.88  E-value: 4.51e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 283 AMESAGVMKTLAEPTLTAISGEKAAFNVGGEYNVInsVKYDDDGKRTNELAKINYGIGLEFMPTVLGPGRISLKIRTSVS 362
Cdd:pfam00263   1 ALEQNGKAKILSSPSLLTLDNQEASIKVGQEVPVP--TTSTTGGTTTTTVEFKDAGLSLKVTPQVTPDGTITLKINPEVS 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 363 EPTTegagttnkmdGVGASVLSLRKRVADTTVELPSGGSMMIGGLIRDEVRQSVSGFPGLTKIPVLGALFRSKDFIRNES 442
Cdd:pfam00263  79 SPDG----------NGGNGVPTINTREISTTVRVKDGQTVVIGGLIQEEDSETESKVPLLGDIPLLGALFRSTSKSKEKT 148

                         170
                  ....*....|
gi 1759812660 443 ELVVIVTPYL 452
Cdd:pfam00263 149 ELLIFITPRI 158
type_II_gspD TIGR02517
type II secretion system protein D; In Gram-negative bacteria, proteins that have first ...
 147-454 3.39e-27

type II secretion system protein D; In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274175 [Multi-domain]  Cd Length: 594  Bit Score: 115.18  E-value: 3.39e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 147 VLTGTVQTPQDSAQAAKLAGLFVSGGEATTGQFTTTASAPTDGGGVAINNPDRNRRASAIVNMLTIVGE-----DQVTLK 221
Cdd:TIGR02517 256 VFGGGGNEPGSSSSPGLGGAVNPGGSQSAQAASSASGGSVSGSADKATNSLIITASPQDYKNIRAVIKQldvrrAQVLVE 335

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 222 VTVAEVSRSVMKQLGVNMAGSGVSNGISYG---GISESIAGAIGN--NLSDTGFGLATS---------------NFSAYL 281
Cdd:TIGR02517 336 AIIVEVSLDDALELGVQWLIAGTGGGVNFStgsPNSGSLLGASASaiSLGSAGIGLLVTsssttsgvggtgggpNLGVLL 415

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 282 RAMESAGVMKTLAEPTLTAISGEKAAFNVGGEY----NVINSVKYDDDGKRTNELAKINYGIGLEFMPTVLGPGRISLKI 357
Cdd:TIGR02517 416 NALKQDTGFNVLSTPSLLTLDNQEAEINVGQEVpvltGSYNTGTGGTNANPFNTYQRKDVGIKLKVTPQINEGGTVRLEI 495

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 358 RTSVSEPtteGAGTTnkmdGVGASVLSLRKRVADTTVELPSGGSMMIGGLIRDEVRQSVSGFPGLTKIPVLGALFRSKDF 437
Cdd:TIGR02517 496 YQEVSSV---APTTV----GSAASGPTFNKREIKTVVLVDNGDTVVLGGLIQDKTSESVTKVPLLGDIPVLGWLFRSTTT 568

                         330
                  ....*....|....*..
gi 1759812660 438 IRNESELVVIVTPYLAR 454
Cdd:TIGR02517 569 ERTKTNLMVFITPRIIR 585
type_III_yscC TIGR02516
type III secretion outer membrane pore, YscC/HrcC family; A number of proteins homologous to ...
 217-455 9.24e-22

type III secretion outer membrane pore, YscC/HrcC family; A number of proteins homologous to the type IV pilus secretin PilQ (TIGR02515) are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). The clade described by this model contains the outer membrane pore proteins of bacterial type III secretion systems, typified by YscC for animal pathogens and HrcC for plant pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274174 [Multi-domain]  Cd Length: 462  Bit Score: 97.83  E-value: 9.24e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 217 QVTLKVTVAEVSRSVMKQLGVNMAGSGVSNGISYGGISESIAGAigNNLSDTGFGLATSNFSAYLRAMESAGVMKTLAEP 296
Cdd:TIGR02516 235 LIEISAWIIDIDASDLSQLGVDWQATLGAGDRQTGFNVSAGAGL--GATGSSIVTSDGDYFMARVNALEQTGKAKIVSRP 312

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 297 TLTAISGEKAAFnvggEYNVINSVKYDddGKRTNELAKINYGIGLEFMPTVLGPGRISLKIRTSVS----EPTTEGAGTT 372
Cdd:TIGR02516 313 SVLTLENVQAVL----DNNRTFYVKVS--GERVADLESVTAGTSLRVTPRVIGDEGAQRQIKLNVDiedgQQKTDGTSTV 386

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 373 NKMDGVGASVLSLRKRVadttvelPSGGSMMIGGLIRDEVRQSVSGFPGLTKIPVLGALFRSKDFIRNESELVVIVTPYL 452
Cdd:TIGR02516 387 DALPEIKRTEINTQARV-------GHGQSLLIGGYYRDESADSVDGIPLLGDIPLLGNLFRSTSKEKSRVVRLFLITPKI 459


                  ...
gi 1759812660 453 ARP 455
Cdd:TIGR02516 460 VRD 462
IV PHA00019
phage assembly protein
 213-454 4.74e-21

phage assembly protein


Pssm-ID: 222772 [Multi-domain]  Cd Length: 428  Bit Score: 95.27  E-value: 4.74e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 213 VGEDQVTLKVTVAEVSRS----VMKQLGVNmAGSGVSNGISyggisesiAGAIGNNLSDTG--FGLATSN-FSAYLRAME 285
Cdd:PHA00019  194 VPRRQVLIEALIFETSLGdgvdLSFAAGLA-SGGKVAGGFN--------TARLTTVLSSAGgsFGIFNGNvLGLSVKALE 264

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 286 SAGVMKTLAEPTLTAISGEKAAFNVGGEYNVINsvkydddGKRTNELAKIN----------YGIGLEFMPTVLGPGRISL 355
Cdd:PHA00019  265 NSSNSRVLSRPRILTLSGQSGYISVGQNVPFVT-------GRVTGEAANVNnpfqtierkdVGVSLEVTPVVMGDGQLVL 337

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 356 KIRTSVSEPTtegagttnkmDGVGASVLSLRKRVADTTVELPSGGSMMIGGLIRDEVRQSVSGFPGLTKIPVLGALFRSK 435
Cdd:PHA00019  338 DIDTKADSLS----------DSTIASDIITNQRSLQTTVQVKDGQTLLLGGLISSNNTDGDSSVPFLSKIPLIGWLFRSK 407

                         250
                  ....*....|....*....
gi 1759812660 436 DFIRNESELVVIVTPYLAR 454
Cdd:PHA00019  408 SDSNEQRTLYVLLTARVIK 426
T2SS-T3SS_pil_N pfam13629
Pilus formation protein N terminal region;
47-118 9.41e-18

Pilus formation protein N terminal region;


Pssm-ID: 433362  Cd Length: 72  Bit Score: 77.62  E-value: 9.41e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1759812660  47 RSQTIKLGLNKSVVLDLPQDAYDVLVSNPTIADAVTRTSRRIYLFGKQVGQTNIFVFGPNGEQVASINVEIE 118
Cdd:pfam13629   1 AARTLTLEVGKSRLLRLPEPIARVAVGNPKIADVTVLSPRTLYLTGKSVGTTNLIVWDANGRVILVLDVVVT 72
IV_pilus_PilQ TIGR02515
type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ ...
 216-450 1.31e-16

type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure. [Cell envelope, Surface structures]


Pssm-ID: 274173 [Multi-domain]  Cd Length: 418  Bit Score: 81.98  E-value: 1.31e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 216 DQVTLKVTVAEVSRSVMKQLGVNMAGSGVS---NGISYGGISESIAGAIGNNL--------------------SDTGFGL 272
Cdd:TIGR02515 166 RQVLIEARIVEATDSFSRELGVRWGITDKNgngNGTAGGIGGNNGTTATGAGGtgnppfgdnlnvnlatattaAGISFAL 245

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 273 ATSNFS----AYLRAMESAGVMKTLAEPTLTAISGEKAAFNVGGE--YNVINSvkyddDGKRTNELAKINygIGLEFMPT 346
Cdd:TIGR02515 246 GKIGSGrlldLELSALESEGKGEIISSPRVLTANNKEAKIEQGTEipYQQTSS-----SGATSVEFKEAV--LSLEVTPQ 318

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 347 VLGPGRISLKIRTSVSEPTTEGAGttnkmdgvGASVLSLRKRVADTTVELPSGGSMMIGGLIRDEVRQSVSGFPGLTKIP 426
Cdd:TIGR02515 319 ITPDGRIIMDLLVSKDSPGVVAQA--------GGGVPAIDKQEINTQVLVKNGETVVIGGIYEQTQTNSEDKVPLLGDIP 390

                         250       260
                  ....*....|....*....|....
gi 1759812660 427 VLGALFRSKDFIRNESELVVIVTP 450
Cdd:TIGR02515 391 VLGNLFKKTGKSDEKSELLIFITP 414
HofQ COG4796
Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular ...
 217-450 2.24e-16

Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443824 [Multi-domain]  Cd Length: 570  Bit Score: 81.82  E-value: 2.24e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 217 QVTLKVTVAEVSRSVMKQLGVNMAGSGV-SNGISYGGISESIAGAI-GNNLSDTGFGL---ATSNFSAY----------- 280
Cdd:COG4796   323 QVLIEARIVEASDSFSRELGVRWGGSGAnGTGNNRGGIGGSLNGTTaGTPLLPDGLNVnlpAANPAGSLgltlaklgggr 402

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 281 -----LRAMESAGVMKTLAEPTLTAISGEKAAFNVGGE--YNVINSvkyddDGKRTNELAKINygIGLEFMPTVLGPGRI 353
Cdd:COG4796   403 lldleLSALEAEGKGEIISSPRVITADQQEASIEQGTEipYQESSS-----SGATSVEFKEAV--LSLEVTPQITPDGRI 475

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 354 SLKIRTSVSEPtteGAGTTNkmdgvgaSVLSLRKRVADTTVELPSGGSMMIGGLIRDEVRQSVSGFPGLTKIPVLGALFR 433
Cdd:COG4796   476 ILDLDVSKDSP---GETVAG-------GVPAIDTKEIKTQVLVENGETVVLGGIYEQTESNSVDKVPFLGDIPLLGWLFK 545

                         250
                  ....*....|....*..
gi 1759812660 434 SKDFIRNESELVVIVTP 450
Cdd:COG4796   546 NTTKTDEKRELLIFITP 562
hofQ PRK13568
DNA uptake porin HofQ;
217-454 2.29e-13

DNA uptake porin HofQ;


Pssm-ID: 237430 [Multi-domain]  Cd Length: 381  Bit Score: 71.69  E-value: 2.29e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 217 QVTLKVTVAEVSRSVMKQLGVNMAGSGVSNGISYGGISE-SIAGAIGNNLSDTGFGLATSN---FSAYLRAMESAGVMKT 292
Cdd:PRK13568  149 QVQLAAHIVTISSESLQELGVRWGMGEGKQGNTALRINDfNVNLPLPNPAASAGFHLARLGgrlLDLELSALEQENQVDI 228

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 293 LAEPTLTAISGEKAAFNVGGE--YNVINSVKydddGKRTNELAKINygIGLEFMPTVLGPGRISLKIRTSVSEPttegaG 370
Cdd:PRK13568  229 IASPRLFTSHQQTASIKQGTEipYTVSSGKS----GSTSIEFKEAV--LGMEVTPKILRNGRITLKLKISQNMP-----G 297

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 371 TTNKmDGVGaSVLSLRKRVADTTVELPSGGSMMIGGLIRDEVRQSVSGFPGLTKIPVLGALFRSKDFIRNESELVVIVTP 450
Cdd:PRK13568  298 RTIK-RGEG-EMLAIDKQEIQTQVTVKDGETIVLGGIFQQQKRQSVNKVPLLGDIPLLGALFRQDTQQQSRRELVIFITP 375


                  ....
gi 1759812660 451 YLAR 454
Cdd:PRK13568  376 KLIS 379
hofQ PRK10560
outer membrane porin HofQ; Provisional
 217-452 6.30e-13

outer membrane porin HofQ; Provisional


Pssm-ID: 182549 [Multi-domain]  Cd Length: 386  Bit Score: 70.23  E-value: 6.30e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 217 QVTLKVTVAEVSRSVMKQLGV-----NMAGSGVSNGISYGGISESIAGAIgnnlSDTGFGLATSN---FSAYLRAMESAG 288
Cdd:PRK10560  154 QVELAAHIVTINEKSLRELGVkwtlaDAQQAGGVGQVTTLGSDLSVATAT----TRVGFNIGRINgrlLDLELSALEQKQ 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 289 VMKTLAEPTLTAISGEKAAFNVGGEynVINSVKYDDDGKRTNELAKINygIGLEFMPTVLGPGRISLKIRTSVSEPtteg 368
Cdd:PRK10560  230 QLDIIASPRLLASHLQPASIKQGSE--IPYQVSSGESGATSVEFKEAV--LGMEVTPTVLQKGRIRLKLHISQNVP---- 301

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 369 AGTTNKMDGvgaSVLSLRKRVADTTVELPSGGSMMIGGLIRDEVRQSVSGFPGLTKIPVLGALFRsKDFIRNES-ELVVI 447
Cdd:PRK10560  302 GQVLQQADG---EVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGQDSVPLLGDIPWLGQLFR-HDGKEDERrELVVF 377


                  ....*
gi 1759812660 448 VTPYL 452
Cdd:PRK10560  378 ITPRL 382
PRK15339 PRK15339
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
129-445 3.53e-08

EscC/YscC/HrcC family type III secretion system outer membrane ring protein;


Pssm-ID: 237948 [Multi-domain]  Cd Length: 559  Bit Score: 55.93  E-value: 3.53e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 129 KRLIPGSDIRVE-LINDNVVLTGTVQTPQDSAQAAKLAGLFVSGGEATTGQFT----TTASAPTDGGGVaINNPDRNR-- 201
Cdd:PRK15339  200 KIVIPGIATVIErLLNGEEQPSGRQASSEPPAMPPFSANGEKGKAANYAGGMSlqeaLKQNAAAGDIKI-IAYPDTNSll 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 202 -----RASAIVNMLTI---VGEDQVTLKVTVAEVSRSVMKQLGVNMAGS---GVSNGISYGGISESIagaignnlsdtgf 270
Cdd:PRK15339  279 vkgtaEQVHFIEMLVKaldVAKRHVELSLWIIDLDKSDLEQLGVNWSGSitiGDKLGVSLNQSSIST------------- 345

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 271 gLATSNFSAYLRAMESAGVMKTLAEPTLTAISGEKAAFNvggeyNviNSVKYDD-DGKRTNELAKINYGIGLEFMPTVLG 349
Cdd:PRK15339  346 -LDGSRFIAAVMALEQKKKANVVSRPVVLTQENIPAIFD-----N--NRTFYTKlVGERNVALEHVTYGTMISVLPRFSA 417

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 350 PGRISLKIRTSVSEPTTEGAGTTNKMDG---VGASVLSLRKRVadttvelPSGGSMMIGGLIRDEVRQSVSGFPGLTKIP 426
Cdd:PRK15339  418 DGQIEMSLDIEDGNEKTPQSDTTTSVDAlpeVGRTLISTIARV-------PQGKSLLIGGYTRDANTDEVQSIPFLGSLP 490

                         330
                  ....*....|....*....
gi 1759812660 427 VLGALFRSKdfIRNESELV 445
Cdd:PRK15339  491 LIGSLFRYS--SKNKSNIV 507
PRK15346 PRK15346
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
135-436 3.94e-07

EscC/YscC/HrcC family type III secretion system outer membrane ring protein;


Pssm-ID: 237950 [Multi-domain]  Cd Length: 499  Bit Score: 52.39  E-value: 3.94e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 135 SDIRVELINDNVVLTGTVQTPQDSAQAAKLAglfVSGGEATTGqftttaSAPTDGGGVAINNPDRNR---RASAIvNMLT 211
Cdd:PRK15346  189 TDTTYQYRDQNVVVPGVVSVLREMAQGNSLP---LPGSNAVEG------SPASQALPVFSADPRQNAvivRDRAA-NMAI 258

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 212 ----IVGEDQ----VTLKVTVAEVSRSVMKQLGVN------MAGSGVS-NGISYGGISESIAGAIGNnlsdtgfglaTSN 276
Cdd:PRK15346  259 yrslITQLDQrpqmIEISVSIIDVDAGDINQLGIDwsasasLGGGKISfNSGFADGNASGFSTVISN----------TGN 328

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 277 FSAYLRAMESAGVMKTLAEPTLTAISGEKAAFnvggEYNVINSVKYDddGKRTNELAKINYGIGLEFMPTVLGPG----- 351
Cdd:PRK15346  329 FMVRLNALEKNSKAKILSQPSVVTLNNIQAVL----DKNVTFYTKLQ--GEKVAKLESITTGSLLRVTPRLIDDNgtqkv 402

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1759812660 352 RISLKIRTSVSEPTTEgagTTNKMDGVGASVLSlrkrvadTTVELPSGGSMMIGGLIRDEVRQSVSGFPGLTKIPVLGAL 431
Cdd:PRK15346  403 MLNLNIQDGQQSATQS---ETDPLPEVQNSEIA-------TQATLKAGQSLLLGGFIQDKQIESQNKIPLLGDIPLIGGL 472


                  ....*
gi 1759812660 432 FRSKD 436
Cdd:PRK15346  473 FRSTD 477
BON pfam04972
BON domain; This domain is found in a family of osmotic shock protection proteins. It is also ...
 120-180 1.14e-03

BON domain; This domain is found in a family of osmotic shock protection proteins. It is also found in some Secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes.


Pssm-ID: 428229 [Multi-domain]  Cd Length: 69  Bit Score: 37.58  E-value: 1.14e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1759812660 120 DVSGISSQLKR------LIPGSDIRVELINDNVVLTGTVQTPQDSAQAAKLAGLfVSGGEATTGQFT 180
Cdd:pfam04972   1 DDADIAAKVKAalakdpGLDAADINVTVENGVVTLSGTVPSEAEKEKAEEIARN-VAGVKKVVNQLT 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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