NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1765960621|gb|KAB6731108|]
View 

SAM-dependent methyltransferase [Bifidobacterium longum]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Thump_like pfam18096
THUMP domain-like; This is a domain of unknown function found in bacteria.
 323-394 2.38e-20

THUMP domain-like; This is a domain of unknown function found in bacteria.


:

Pssm-ID: 465646  Cd Length: 76  Bit Score: 84.24  E-value: 2.38e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1765960621 323 GRSFAIESIATMNKKELKQLLA--GLTHANIAVRNFPLTVAQLRKKLKLKDGGST-YLFATTDAQ-GRHLVLRTKK 394
Cdd:pfam18096   1 GRAFRILEVLPFSKKALKKLLRerGIGKAEIKKRGFPLDPEELRKKLKIKDGGRTaTLFLTRVGKaGRPVAILCER 76
 
Name Accession Description Interval E-value
Thump_like pfam18096
THUMP domain-like; This is a domain of unknown function found in bacteria.
 323-394 2.38e-20

THUMP domain-like; This is a domain of unknown function found in bacteria.


Pssm-ID: 465646  Cd Length: 76  Bit Score: 84.24  E-value: 2.38e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1765960621 323 GRSFAIESIATMNKKELKQLLA--GLTHANIAVRNFPLTVAQLRKKLKLKDGGST-YLFATTDAQ-GRHLVLRTKK 394
Cdd:pfam18096   1 GRAFRILEVLPFSKKALKKLLRerGIGKAEIKKRGFPLDPEELRKKLKIKDGGRTaTLFLTRVGKaGRPVAILCER 76
 
Name Accession Description Interval E-value
Thump_like pfam18096
THUMP domain-like; This is a domain of unknown function found in bacteria.
 323-394 2.38e-20

THUMP domain-like; This is a domain of unknown function found in bacteria.


Pssm-ID: 465646  Cd Length: 76  Bit Score: 84.24  E-value: 2.38e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1765960621 323 GRSFAIESIATMNKKELKQLLA--GLTHANIAVRNFPLTVAQLRKKLKLKDGGST-YLFATTDAQ-GRHLVLRTKK 394
Cdd:pfam18096   1 GRAFRILEVLPFSKKALKKLLRerGIGKAEIKKRGFPLDPEELRKKLKIKDGGRTaTLFLTRVGKaGRPVAILCER 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH