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Conserved domains on  [gi|1868657485|gb|KAF5741324|]
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protein FAR1-RELATED SEQUENCE 5 [Tripterygium wilfordii]

Protein Classification

FHY3/FAR1 family protein( domain architecture ID 10503830)

FHY3/FAR1 family protein similar to FAR-RED ELONGATED HYPOCOTYL 3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) which are transcription factors that play multiple roles in a wide range of cellular processes and are crucial for plant growth and development, and to transposases of the Mutator-like element (MULE)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FAR1 pfam03101
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 57-145 2.01e-32

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


:

Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 112.81  E-value: 2.01e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1868657485  57 YYTEYARQLGFVVRIMQRRPSGIDGRTLARQLGCNKQGFSPNHKGLIDpEKKPRSSAREGCKATILVKMEKSGKWVVTRF 136
Cdd:pfam03101   2 FYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCSKEGFKQPKQRTGE-ARRPRPSTRTGCKAMIVVKRESDGKWVVTQF 80


                  ....*....
gi 1868657485 137 VRDHNHPLV 145
Cdd:pfam03101  81 VKEHNHELL 89
 
Name Accession Description Interval E-value
FAR1 pfam03101
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 57-145 2.01e-32

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 112.81  E-value: 2.01e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1868657485  57 YYTEYARQLGFVVRIMQRRPSGIDGRTLARQLGCNKQGFSPNHKGLIDpEKKPRSSAREGCKATILVKMEKSGKWVVTRF 136
Cdd:pfam03101   2 FYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCSKEGFKQPKQRTGE-ARRPRPSTRTGCKAMIVVKRESDGKWVVTQF 80


                  ....*....
gi 1868657485 137 VRDHNHPLV 145
Cdd:pfam03101  81 VKEHNHELL 89
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 1-145 7.34e-18

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 81.58  E-value: 7.34e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1868657485   1 MMDVDK---GDAAVENSIEEKAEVL-----EVNTIIEPHAGLEGNAILEPCVGMKYESEDSALKYYTEYARQLGFVVRIM 72
Cdd:PLN03097   25 MLSEVKlhnGDMEIGNVVDVAEEVLsidggDMNSPTGELVEFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQ 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1868657485  73 QRRPSGIDGRTLARQLGCNKQGFSPNH----------KGLIDPEKKP--RSSAREGCKATILVKMEKSGKWVVTRFVRDH 140
Cdd:PLN03097  105 NSRRSKTSREFIDAKFACSRYGTKREYdksfnrprarQTKQDPENGTgrRSCAKTDCKASMHVKRRPDGKWVIHSFVKEH 184


                  ....*
gi 1868657485 141 NHPLV 145
Cdd:PLN03097  185 NHELL 189
 
Name Accession Description Interval E-value
FAR1 pfam03101
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 57-145 2.01e-32

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 112.81  E-value: 2.01e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1868657485  57 YYTEYARQLGFVVRIMQRRPSGIDGRTLARQLGCNKQGFSPNHKGLIDpEKKPRSSAREGCKATILVKMEKSGKWVVTRF 136
Cdd:pfam03101   2 FYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCSKEGFKQPKQRTGE-ARRPRPSTRTGCKAMIVVKRESDGKWVVTQF 80


                  ....*....
gi 1868657485 137 VRDHNHPLV 145
Cdd:pfam03101  81 VKEHNHELL 89
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 1-145 7.34e-18

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 81.58  E-value: 7.34e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1868657485   1 MMDVDK---GDAAVENSIEEKAEVL-----EVNTIIEPHAGLEGNAILEPCVGMKYESEDSALKYYTEYARQLGFVVRIM 72
Cdd:PLN03097   25 MLSEVKlhnGDMEIGNVVDVAEEVLsidggDMNSPTGELVEFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQ 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1868657485  73 QRRPSGIDGRTLARQLGCNKQGFSPNH----------KGLIDPEKKP--RSSAREGCKATILVKMEKSGKWVVTRFVRDH 140
Cdd:PLN03097  105 NSRRSKTSREFIDAKFACSRYGTKREYdksfnrprarQTKQDPENGTgrRSCAKTDCKASMHVKRRPDGKWVIHSFVKEH 184


                  ....*
gi 1868657485 141 NHPLV 145
Cdd:PLN03097  185 NHELL 189
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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