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Conserved domains on  [gi|1967363823|gb|KAG2288341|]
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hypothetical protein Bca52824_047945 [Brassica carinata]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Homeobox_KN pfam05920
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ...
 340-378 3.71e-17

Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified.


:

Pssm-ID: 428673  Cd Length: 39  Bit Score: 74.47  E-value: 3.71e-17
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1967363823 340 WSRHYKWPYPPEQQKLALAESTGLDQKQINNWFINQRKR 378
Cdd:pfam05920   1 LYEHLHNPYPSEEEKAELAKETGLSRKQISNWFINARRR 39
ELK pfam03789
ELK domain; This domain is required for the nuclear localization of these proteins. All of ...
 299-320 2.20e-08

ELK domain; This domain is required for the nuclear localization of these proteins. All of these proteins are members of the Tale/Knox homeodomain family, a subfamily within homeobox pfam00046.


:

Pssm-ID: 427504  Cd Length: 22  Bit Score: 49.35  E-value: 2.20e-08
                          10        20
                  ....*....|....*....|..
gi 1967363823 299 ELKGQLLRKYSGYLGSLKQEFM 320
Cdd:pfam03789   1 ELKEQLLRKYSGYLSSLRREFS 22
Transposase_24 super family cl03830
Plant transposase (Ptta/En/Spm family); Transposase proteins are necessary for efficient DNA ...
 153-203 6.35e-05

Plant transposase (Ptta/En/Spm family); Transposase proteins are necessary for efficient DNA transposition. This family includes various plant transposases from the Ptta and En/Spm families.


The actual alignment was detected with superfamily member pfam03004:

Pssm-ID: 367291 [Multi-domain]  Cd Length: 137  Bit Score: 42.81  E-value: 6.35e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1967363823 153 EGLDEPPSYTALARKTHTGKDGSFLDERIEK-------LVLER--------------------------GKTKKGTVYGL 199
Cdd:pfam03004  51 EEKGRTPTRAEVFIETHTKKDGTYVDKKAEEivdqvqeLLQERlsesesetssvsdgssdkdeiflqvvGKDKKGRVYGL 130


                  ....
gi 1967363823 200 GSVQ 203
Cdd:pfam03004 131 GSLQ 134
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 2-102 3.90e-04

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.00  E-value: 3.90e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1967363823    2 APSTGIPNeSRCRPRYTGLQL------PDM--RQGRPQlILSDPSAMAPYSAPPGVVPPGSVPPGVVPPGAVPHASVGFS 73
Cdd:PHA03247  2563 APDRSVPP-PRPAPRPSEPAVtsrarrPDAppQSARPR-APVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDP 2640

                           90       100       110
                   ....*....|....*....|....*....|.
gi 1967363823   74 SAVPAAPAPYVRRREDALLRA--PSRPTWQG 102
Cdd:PHA03247  2641 HPPPTVPPPERPRDDPAPGRVsrPRRARRLG 2671
 
Name Accession Description Interval E-value
Homeobox_KN pfam05920
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ...
 340-378 3.71e-17

Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified.


Pssm-ID: 428673  Cd Length: 39  Bit Score: 74.47  E-value: 3.71e-17
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1967363823 340 WSRHYKWPYPPEQQKLALAESTGLDQKQINNWFINQRKR 378
Cdd:pfam05920   1 LYEHLHNPYPSEEEKAELAKETGLSRKQISNWFINARRR 39
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 331-383 1.26e-10

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 56.48  E-value: 1.26e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1967363823 331 EARQQLLDWWSRHykwPYPPEQQKLALAESTGLDQKQINNWFINQRKRHWKRS 383
Cdd:cd00086    10 EQLEELEKEFEKN---PYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 331-380 1.02e-09

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 54.18  E-value: 1.02e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 1967363823  331 EARQQLLDWWSRHykwPYPPEQQKLALAESTGLDQKQINNWFINQRKRHW 380
Cdd:smart00389  11 EQLEELEKEFQKN---PYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
ELK pfam03789
ELK domain; This domain is required for the nuclear localization of these proteins. All of ...
 299-320 2.20e-08

ELK domain; This domain is required for the nuclear localization of these proteins. All of these proteins are members of the Tale/Knox homeodomain family, a subfamily within homeobox pfam00046.


Pssm-ID: 427504  Cd Length: 22  Bit Score: 49.35  E-value: 2.20e-08
                          10        20
                  ....*....|....*....|..
gi 1967363823 299 ELKGQLLRKYSGYLGSLKQEFM 320
Cdd:pfam03789   1 ELKEQLLRKYSGYLSSLRREFS 22
Transposase_24 pfam03004
Plant transposase (Ptta/En/Spm family); Transposase proteins are necessary for efficient DNA ...
 153-203 6.35e-05

Plant transposase (Ptta/En/Spm family); Transposase proteins are necessary for efficient DNA transposition. This family includes various plant transposases from the Ptta and En/Spm families.


Pssm-ID: 367291 [Multi-domain]  Cd Length: 137  Bit Score: 42.81  E-value: 6.35e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1967363823 153 EGLDEPPSYTALARKTHTGKDGSFLDERIEK-------LVLER--------------------------GKTKKGTVYGL 199
Cdd:pfam03004  51 EEKGRTPTRAEVFIETHTKKDGTYVDKKAEEivdqvqeLLQERlsesesetssvsdgssdkdeiflqvvGKDKKGRVYGL 130


                  ....
gi 1967363823 200 GSVQ 203
Cdd:pfam03004 131 GSLQ 134
PHA03247 PHA03247
large tegument protein UL36; Provisional
 2-102 3.90e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.00  E-value: 3.90e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1967363823    2 APSTGIPNeSRCRPRYTGLQL------PDM--RQGRPQlILSDPSAMAPYSAPPGVVPPGSVPPGVVPPGAVPHASVGFS 73
Cdd:PHA03247  2563 APDRSVPP-PRPAPRPSEPAVtsrarrPDAppQSARPR-APVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDP 2640

                           90       100       110
                   ....*....|....*....|....*....|.
gi 1967363823   74 SAVPAAPAPYVRRREDALLRA--PSRPTWQG 102
Cdd:PHA03247  2641 HPPPTVPPPERPRDDPAPGRVsrPRRARRLG 2671
FAP pfam07174
Fibronectin-attachment protein (FAP); This family contains bacterial fibronectin-attachment ...
 30-78 6.24e-04

Fibronectin-attachment protein (FAP); This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix.


Pssm-ID: 429334  Cd Length: 301  Bit Score: 41.45  E-value: 6.24e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1967363823  30 PQLILSDPSAMAPYSAPPGVVPPGSVPPGVVPPGAVPHASVGFSSAVPA 78
Cdd:pfam07174  81 APPPPADPNAPPPPPADPNAPPPPAVDPNAPEPGRIDNAVGGFSYVVPA 129
 
Name Accession Description Interval E-value
Homeobox_KN pfam05920
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ...
 340-378 3.71e-17

Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified.


Pssm-ID: 428673  Cd Length: 39  Bit Score: 74.47  E-value: 3.71e-17
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1967363823 340 WSRHYKWPYPPEQQKLALAESTGLDQKQINNWFINQRKR 378
Cdd:pfam05920   1 LYEHLHNPYPSEEEKAELAKETGLSRKQISNWFINARRR 39
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 331-383 1.26e-10

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 56.48  E-value: 1.26e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1967363823 331 EARQQLLDWWSRHykwPYPPEQQKLALAESTGLDQKQINNWFINQRKRHWKRS 383
Cdd:cd00086    10 EQLEELEKEFEKN---PYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 331-380 1.02e-09

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 54.18  E-value: 1.02e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 1967363823  331 EARQQLLDWWSRHykwPYPPEQQKLALAESTGLDQKQINNWFINQRKRHW 380
Cdd:smart00389  11 EQLEELEKEFQKN---PYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
ELK pfam03789
ELK domain; This domain is required for the nuclear localization of these proteins. All of ...
 299-320 2.20e-08

ELK domain; This domain is required for the nuclear localization of these proteins. All of these proteins are members of the Tale/Knox homeodomain family, a subfamily within homeobox pfam00046.


Pssm-ID: 427504  Cd Length: 22  Bit Score: 49.35  E-value: 2.20e-08
                          10        20
                  ....*....|....*....|..
gi 1967363823 299 ELKGQLLRKYSGYLGSLKQEFM 320
Cdd:pfam03789   1 ELKEQLLRKYSGYLSSLRREFS 22
Homeodomain pfam00046
Homeodomain;
347-382 2.43e-05

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 41.72  E-value: 2.43e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1967363823 347 PYPPEQQKLALAESTGLDQKQINNWFINQRKRhWKR 382
Cdd:pfam00046  23 PYPSAEEREELAAQLGLTERQVKVWFQNRRAK-WKR 57
Transposase_24 pfam03004
Plant transposase (Ptta/En/Spm family); Transposase proteins are necessary for efficient DNA ...
 153-203 6.35e-05

Plant transposase (Ptta/En/Spm family); Transposase proteins are necessary for efficient DNA transposition. This family includes various plant transposases from the Ptta and En/Spm families.


Pssm-ID: 367291 [Multi-domain]  Cd Length: 137  Bit Score: 42.81  E-value: 6.35e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1967363823 153 EGLDEPPSYTALARKTHTGKDGSFLDERIEK-------LVLER--------------------------GKTKKGTVYGL 199
Cdd:pfam03004  51 EEKGRTPTRAEVFIETHTKKDGTYVDKKAEEivdqvqeLLQERlsesesetssvsdgssdkdeiflqvvGKDKKGRVYGL 130


                  ....
gi 1967363823 200 GSVQ 203
Cdd:pfam03004 131 GSLQ 134
PHA03247 PHA03247
large tegument protein UL36; Provisional
 2-102 3.90e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.00  E-value: 3.90e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1967363823    2 APSTGIPNeSRCRPRYTGLQL------PDM--RQGRPQlILSDPSAMAPYSAPPGVVPPGSVPPGVVPPGAVPHASVGFS 73
Cdd:PHA03247  2563 APDRSVPP-PRPAPRPSEPAVtsrarrPDAppQSARPR-APVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDP 2640

                           90       100       110
                   ....*....|....*....|....*....|.
gi 1967363823   74 SAVPAAPAPYVRRREDALLRA--PSRPTWQG 102
Cdd:PHA03247  2641 HPPPTVPPPERPRDDPAPGRVsrPRRARRLG 2671
FAP pfam07174
Fibronectin-attachment protein (FAP); This family contains bacterial fibronectin-attachment ...
 30-78 6.24e-04

Fibronectin-attachment protein (FAP); This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix.


Pssm-ID: 429334  Cd Length: 301  Bit Score: 41.45  E-value: 6.24e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1967363823  30 PQLILSDPSAMAPYSAPPGVVPPGSVPPGVVPPGAVPHASVGFSSAVPA 78
Cdd:pfam07174  81 APPPPADPNAPPPPPADPNAPPPPAVDPNAPEPGRIDNAVGGFSYVVPA 129
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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