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Conserved domains on  [gi|2091982097|gb|KAG9511426|]
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NADH dehydrogenase subunit 5 (mitochondrion) [Fragariocoptes setiger]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 super family cl33358
NADH dehydrogenase subunit 5; Provisional
 1-487 4.67e-62

NADH dehydrogenase subunit 5; Provisional


The actual alignment was detected with superfamily member MTH00151:

Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 213.17  E-value: 4.67e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097   1 MSFMVFTSLVSMTLLSSSELNGIMMELKIMNMLSSSLSFSVSMDKTSLSFMMMISMVTCSVLPFSTMYMESYNKKKKFFL 80
Cdd:MTH00151   10 LLFSYSVFLFPLLGYFGLNGISLIFEWELLSVSSCSFSFELVLDWVSLSFSGVVCLISGCVFLFSSSYMSEDPFLKRFMW 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  81 IMMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMMYQNQKTMMNSMLTMFFNRIGDFLMFFSIMMFMNNMEekfCNI 160
Cdd:MTH00151   90 LVMLFVLSMNLLIFIPSLPSLLLGWDGLGIVSFALVIYYQNKKSLSAGMLTALTNRIGDVLILLSIALLVLLGH---WSI 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 161 LSMNS-KSLTNLSIALMLTSMTKSAQVPLSAWLPAAMSAPTPISAMVHSSTLVTAGIYIILK---MNESMKDSMWMLTST 236
Cdd:MTH00151  167 LSMWDfKLSGWLGLLLVLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLIRffpFLSSSSGFSSFLLFI 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 237 TSITLMLASMAANMETDLKKIIAFSTMSQISIIMMMISMNMKTSGMMHMINHAMFKTLLFMTAGSTFLKKWMEQDSRKTK 316
Cdd:MTH00151  247 SLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLYTHALFKALLFLCAGSIIHSSSGTQDIRLLG 326

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 317 SSKTMNKLYKSSLTSSIVSMSGIPFSCSFFSKDKFLEEMKWENKNSAMSFIMAASSLATVKKNKKILQSMKNDKMNSASI 396
Cdd:MTH00151  327 SLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTALYSARLSFCLVWGSMKSSSL 406

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 397 -KKMSIQPFSIMSMVTITIG---------SVNTWTNEYLTKPILYKMEIKMnnLMIFSIMMNEMKSKMKKTKMWSNN--- 463
Cdd:MTH00151  407 sSKSDEDFYVSLPMLLLSLGaliggkllqSLFEGFSEEFFLPSYLKLLIGF--VILLGLFLSFGFWDSGFSSSKMVKlsf 484

                         490       500
                  ....*....|....*....|....*...
gi 2091982097 464 ----MMFMKWWSSNFLLKVNKKTKHMEM 487
Cdd:MTH00151  485 ffssMWFLSPLSSQPLKSLSLKLSNSSM 512
 
Name Accession Description Interval E-value
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-487 4.67e-62

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 213.17  E-value: 4.67e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097   1 MSFMVFTSLVSMTLLSSSELNGIMMELKIMNMLSSSLSFSVSMDKTSLSFMMMISMVTCSVLPFSTMYMESYNKKKKFFL 80
Cdd:MTH00151   10 LLFSYSVFLFPLLGYFGLNGISLIFEWELLSVSSCSFSFELVLDWVSLSFSGVVCLISGCVFLFSSSYMSEDPFLKRFMW 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  81 IMMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMMYQNQKTMMNSMLTMFFNRIGDFLMFFSIMMFMNNMEekfCNI 160
Cdd:MTH00151   90 LVMLFVLSMNLLIFIPSLPSLLLGWDGLGIVSFALVIYYQNKKSLSAGMLTALTNRIGDVLILLSIALLVLLGH---WSI 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 161 LSMNS-KSLTNLSIALMLTSMTKSAQVPLSAWLPAAMSAPTPISAMVHSSTLVTAGIYIILK---MNESMKDSMWMLTST 236
Cdd:MTH00151  167 LSMWDfKLSGWLGLLLVLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLIRffpFLSSSSGFSSFLLFI 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 237 TSITLMLASMAANMETDLKKIIAFSTMSQISIIMMMISMNMKTSGMMHMINHAMFKTLLFMTAGSTFLKKWMEQDSRKTK 316
Cdd:MTH00151  247 SLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLYTHALFKALLFLCAGSIIHSSSGTQDIRLLG 326

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 317 SSKTMNKLYKSSLTSSIVSMSGIPFSCSFFSKDKFLEEMKWENKNSAMSFIMAASSLATVKKNKKILQSMKNDKMNSASI 396
Cdd:MTH00151  327 SLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTALYSARLSFCLVWGSMKSSSL 406

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 397 -KKMSIQPFSIMSMVTITIG---------SVNTWTNEYLTKPILYKMEIKMnnLMIFSIMMNEMKSKMKKTKMWSNN--- 463
Cdd:MTH00151  407 sSKSDEDFYVSLPMLLLSLGaliggkllqSLFEGFSEEFFLPSYLKLLIGF--VILLGLFLSFGFWDSGFSSSKMVKlsf 484

                         490       500
                  ....*....|....*....|....*...
gi 2091982097 464 ----MMFMKWWSSNFLLKVNKKTKHMEM 487
Cdd:MTH00151  485 ffssMWFLSPLSSQPLKSLSLKLSNSSM 512
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 43-373 8.03e-49

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 178.04  E-value: 8.03e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  43 MDKTSLSFMMMISMVTCSVLPFSTMYMESYNKKKKFFLIMMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMMYQNQ 122
Cdd:COG1009    78 LDGLSLLMLLLVTGVGLLVHIYSIGYMSGDPGLARFFAYLLLFMAAMLGLVLSDNLLLLFVFWELVGLCSYLLIGFWYEK 157

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 123 KTM----MNSMLTmffNRIGDFLMFFSIMMFMN-----NMEEKFCNILSMNSKSLTNL-SIALMLTSMTKSAQVPLSAWL 192
Cdd:COG1009   158 PSArraaRKAFLV---TRVGDLGLLLGILLLGAiagtlNFSELLAAAPTILSSPLLTLiLLLLLLGAFGKSAQFPLHFWL 234

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 193 PAAMSAPTPISAMVHSSTLVTAGIYIILKMNESMKDS---MWMLTSTTSITLMLASMAANMETDLKKIIAFSTMSQISII 269
Cdd:COG1009   235 PDAMEGPTPVSALLHAATMVKAGVYLLARLSPLFALSpvwLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYM 314

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 270 MMMISMNMKTSGMMHMINHAMFKTLLFMTAGStFLKKWMEQDSRKtkssktMNKLYK----SSLTSSI--VSMSGIPFSC 343
Cdd:COG1009   315 FLALGVGAYVAALFHLLTHAFFKALLFLGAGS-VIHATGTRDIRK------MGGLRKkmpiTAITFLIgaLSLAGIPPFA 387

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 2091982097 344 SFFSKDKFLEEMkWENKNSAM---------SFIMAASSL 373
Cdd:COG1009   388 GFFSKEAILEAA-LEAGGLGPlllavallgAFLTAFYSF 425
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 44-354 3.69e-43

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 162.07  E-value: 3.69e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  44 DKTSLSFMMMISMVTCSVLPFSTMYMESYNKKKKFFLIMMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMMYQNQK 123
Cdd:TIGR01974  82 DGLSLTMLVVVTGVGSLVHIYSIGYMAHDEGYSRFFAYLNLFTFSMLMLVLADNFLQLFFGWEGVGLCSYLLIGFWYKKP 161

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 124 TMMNSMLTMF-FNRIGDFLMFFSIM-MFMNNMEEKFCNILSMNSKS----LTNLSIALMLTSMTKSAQVPLSAWLPAAMS 197
Cdd:TIGR01974 162 SANNAAIKAFvVNRVGDFGLLLGIFlIFWYFGTLNFQEVFALAPGAffsaLTLICLLLFIGAMGKSAQLPLHTWLPDAME 241

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 198 APTPISAMVHSSTLVTAGIYIILKMN---ESMKDSMWMLTSTTSITLMLASMAANMETDLKKIIAFSTMSQISIIMMMIS 274
Cdd:TIGR01974 242 GPTPVSALIHAATMVTAGVYLVARTSplfELSPTALYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALG 321

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 275 MNMKTSGMMHMINHAMFKTLLFMTAGSTFLKKWMEQDSRKT-KSSKTMNKLYKSSLTSSIvSMSGIPFSCSFFSKDKFLE 353
Cdd:TIGR01974 322 VGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMgGLRKKMPVTYITFLIGSL-ALIGFPGFAGFFSKDLILE 400


                  .
gi 2091982097 354 E 354
Cdd:TIGR01974 401 A 401
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 95-353 5.42e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 96.23  E-value: 5.42e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  95 SESLISTVTGWDMLGVTSIALIMMY-QNQKTMMNSMLTMFFNRIGDFLMFFSIMMFMNNMEEKFCNILSM------NSKS 167
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWgKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKaltgglNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 168 LTNLSIALMLTSMTKSAQVPLSAWLPAA-MSAPTPISAMVhSSTLVTAGIYIILKMNESMKDSMW----MLTSTTSITLM 242
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAyEGAPTPVSALL-AATLVKAGGYGLIRRSLLYLPSSPfiqqILLILAIISML 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 243 LASMAANMETDLKKIIAFSTMS---QISIIMMMISMNMKTSGMMHMINHAMFKTLLFMTAGSTFLKKWMEQDSRKTKSSK 319
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSIShmgYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLA 239

                         250       260       270
                  ....*....|....*....|....*....|....
gi 2091982097 320 TMNKLYKSSLTSSIVSMSGIPFSCSFFSKDKFLE 353
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
 
Name Accession Description Interval E-value
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-487 4.67e-62

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 213.17  E-value: 4.67e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097   1 MSFMVFTSLVSMTLLSSSELNGIMMELKIMNMLSSSLSFSVSMDKTSLSFMMMISMVTCSVLPFSTMYMESYNKKKKFFL 80
Cdd:MTH00151   10 LLFSYSVFLFPLLGYFGLNGISLIFEWELLSVSSCSFSFELVLDWVSLSFSGVVCLISGCVFLFSSSYMSEDPFLKRFMW 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  81 IMMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMMYQNQKTMMNSMLTMFFNRIGDFLMFFSIMMFMNNMEekfCNI 160
Cdd:MTH00151   90 LVMLFVLSMNLLIFIPSLPSLLLGWDGLGIVSFALVIYYQNKKSLSAGMLTALTNRIGDVLILLSIALLVLLGH---WSI 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 161 LSMNS-KSLTNLSIALMLTSMTKSAQVPLSAWLPAAMSAPTPISAMVHSSTLVTAGIYIILK---MNESMKDSMWMLTST 236
Cdd:MTH00151  167 LSMWDfKLSGWLGLLLVLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLIRffpFLSSSSGFSSFLLFI 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 237 TSITLMLASMAANMETDLKKIIAFSTMSQISIIMMMISMNMKTSGMMHMINHAMFKTLLFMTAGSTFLKKWMEQDSRKTK 316
Cdd:MTH00151  247 SLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLYTHALFKALLFLCAGSIIHSSSGTQDIRLLG 326

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 317 SSKTMNKLYKSSLTSSIVSMSGIPFSCSFFSKDKFLEEMKWENKNSAMSFIMAASSLATVKKNKKILQSMKNDKMNSASI 396
Cdd:MTH00151  327 SLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTALYSARLSFCLVWGSMKSSSL 406

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 397 -KKMSIQPFSIMSMVTITIG---------SVNTWTNEYLTKPILYKMEIKMnnLMIFSIMMNEMKSKMKKTKMWSNN--- 463
Cdd:MTH00151  407 sSKSDEDFYVSLPMLLLSLGaliggkllqSLFEGFSEEFFLPSYLKLLIGF--VILLGLFLSFGFWDSGFSSSKMVKlsf 484

                         490       500
                  ....*....|....*....|....*...
gi 2091982097 464 ----MMFMKWWSSNFLLKVNKKTKHMEM 487
Cdd:MTH00151  485 ffssMWFLSPLSSQPLKSLSLKLSNSSM 512
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-477 7.66e-57

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 199.21  E-value: 7.66e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097   1 MSFMVFTSLVSMTLLSSSELNGIMMELKIMNMLSSSLSFSVSMDKTSLSFMMMISMVTCSVLPFSTMYMESYNKKKKFFL 80
Cdd:MTH00165   10 FLFFLSLILFFLGLYFLLNDYSLFIEWELFSLNSSSIVMTFLFDWMSLLFMSFVLFISSMVIYYSKSYMSGDKNINRFIY 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  81 IMMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMMYQNQKTMMNSMLTMFFNRIGDFLMFFSIMMFMN--NMEEKFC 158
Cdd:MTH00165   90 LVLLFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYYQNKKSYNAGMLTALSNRIGDVAILLSIAWMMNfgSWNFIFY 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 159 NILSMNSKSLTNLSIALMLTSMTKSAQVPLSAWLPAAMSAPTPISAMVHSSTLVTAGIYIILKMNESMKDS--MWMLTST 236
Cdd:MTH00165  170 LDFMKNSFEMLLIGLLIMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNNLLFSSffSKFLLLI 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 237 TSITLMLASMAANMETDLKKIIAFSTMSQISIIMMMISMNMKTSGMMHMINHAMFKTLLFMTAGSTFLKKWMEQDSRKTK 316
Cdd:MTH00165  250 SLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNSQDIRFMG 329

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 317 SSKTMNKLYKSSLTSSIVSMSGIPFSCSFFSKDKFLEEMKWENKNSAMSFIMAASSLATVKKNKKILQSMKNDKMNSASI 396
Cdd:MTH00165  330 GLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKSL 409

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 397 KKMS------IQPFSIMSMVTITIGSVNTWTNEYLTKPILYKMEIKMNNLMI-------------FSIMMNEMKSKMKKT 457
Cdd:MTH00165  410 NNLSdeskfmLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVillggwlgyelslMSLSYNLKSLKNYKL 489

                         490       500
                  ....*....|....*....|
gi 2091982097 458 KMWSNNMMFMKWWSSNFLLK 477
Cdd:MTH00165  490 SSFLGSMWFMPFLSTYGISY 509
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-472 2.49e-54

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 192.17  E-value: 2.49e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097   1 MSFMVFTSLVSMTLLSSSELngIMMELKIMNMLSSSLSFSVSMDKTSLSFMMMISMVTCSVLPFSTMYMESYNKKKKFFL 80
Cdd:MTH00209   10 MLLFLFSFLMFVIFMWFQKI--VILEWELLSLNSMSISFPLIIDKMSLLFSSVVLLISGSVMWFSTSYMAGEKFKKRFIL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  81 IMMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMMYQNQKTMMNSMLTMFFNRIGDFLMFFSIMMFMNNMEEKFCnI 160
Cdd:MTH00209   88 LVLLFILSMNFLIFVPNLITLLLGWDGLGLVSYLLVIYYQNSKSLSAGMLTALTNRVGDALLILSIAWMLMHGNWNIF-Y 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 161 LSMNSKSLTNLSIALMLTSMTKSAQVPLSAWLPAAMSAPTPISAMVHSSTLVTAGIYIILKMNESMKDSM---WMLTSTT 237
Cdd:MTH00209  167 LNFNSNLGSVISVLIVLAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFFPSLFSSPffsMSLLLLG 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 238 SITLMLASMAANMETDLKKIIAFSTMSQISIIMMMISMNMKTSGMMHMINHAMFKTLLFMTAGSTFLKKWMEQDSRKTKS 317
Cdd:MTH00209  247 SLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNQPELAFFHLITHALFKALLFICAGNIIHSHGHSQDIRMVGN 326

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 318 SKTMNKLYKSSLTSSIVSMSGIPFSCSFFSKDKFLEEMKWENKNSAMSFIMAASSLATVKKNKKILQSMKNDKMNSASIK 397
Cdd:MTH00209  327 LWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAAYSMRLSYFSLWGPNSSKSLN 406

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 398 ------KMSIQPFSIMSMVTITIGSVNTWTNEYLTKPILYKMEIKMNNLMIFSIMMNEMKSKMKKTKMWSNNMMFMKWWS 471
Cdd:MTH00209  407 ssfdqnKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLLMYMVLKKNFFLIKGYKVNYFLS 486


                  .
gi 2091982097 472 S 472
Cdd:MTH00209  487 Q 487
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-376 6.66e-53

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 189.01  E-value: 6.66e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097   1 MSFMVFTSLVSMTLLSSSELNGIMMELKIMNMLSSSLSFSVSMDKTSLSFMMMISMVTCSVLPFSTMYMESYNKKKKFFL 80
Cdd:MTH00211   35 VKLSFFISLIPLLIFLDQGLETILTNWSWINLGLFSLNLSFKFDFYSIFFTSVALYVTWSILEFSLWYMSSEPNINRFFK 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  81 IMMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMMYQNQKTMMNSMLT-MFFNRIGDFLMFFSIMMFMNNMEEKFCN 159
Cdd:MTH00211  115 YLLLFLIFMLILVSANNLFQLFIGWEGVGIMSFLLISWWYGRSDANTAALQaVIYNRIGDIGLLLSMVWLLLNLNSWEIS 194

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 160 ILSMNSKSLTNLSIALMLTSMTKSAQVPLSAWLPAAMSAPTPISAMVHSSTLVTAGIYIILKMNESMKDSMWMLTSTT-- 237
Cdd:MTH00211  195 QLFILNLDLTLFLLGLLLAAMGKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRLSPLFQNNQLILGAVLll 274

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 238 -SITLMLASMAANMETDLKKIIAFSTMSQISIIMMMISMNMKTSGMMHMINHAMFKTLLFMTAGSTFLKKWMEQDSRKTK 316
Cdd:MTH00211  275 gALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQLAFLHICTHAFFKAMLFMCSGSIIHGLNNEQDIRKMG 354

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 317 SSKTMNKLYKSSLTSSIVSMSGIPFSCSFFSKDKFLEEMKWENKNSAMSFIMAASSLATV 376
Cdd:MTH00211  355 GLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTA 414
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 43-373 8.03e-49

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 178.04  E-value: 8.03e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  43 MDKTSLSFMMMISMVTCSVLPFSTMYMESYNKKKKFFLIMMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMMYQNQ 122
Cdd:COG1009    78 LDGLSLLMLLLVTGVGLLVHIYSIGYMSGDPGLARFFAYLLLFMAAMLGLVLSDNLLLLFVFWELVGLCSYLLIGFWYEK 157

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 123 KTM----MNSMLTmffNRIGDFLMFFSIMMFMN-----NMEEKFCNILSMNSKSLTNL-SIALMLTSMTKSAQVPLSAWL 192
Cdd:COG1009   158 PSArraaRKAFLV---TRVGDLGLLLGILLLGAiagtlNFSELLAAAPTILSSPLLTLiLLLLLLGAFGKSAQFPLHFWL 234

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 193 PAAMSAPTPISAMVHSSTLVTAGIYIILKMNESMKDS---MWMLTSTTSITLMLASMAANMETDLKKIIAFSTMSQISII 269
Cdd:COG1009   235 PDAMEGPTPVSALLHAATMVKAGVYLLARLSPLFALSpvwLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYM 314

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 270 MMMISMNMKTSGMMHMINHAMFKTLLFMTAGStFLKKWMEQDSRKtkssktMNKLYK----SSLTSSI--VSMSGIPFSC 343
Cdd:COG1009   315 FLALGVGAYVAALFHLLTHAFFKALLFLGAGS-VIHATGTRDIRK------MGGLRKkmpiTAITFLIgaLSLAGIPPFA 387

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 2091982097 344 SFFSKDKFLEEMkWENKNSAM---------SFIMAASSL 373
Cdd:COG1009   388 GFFSKEAILEAA-LEAGGLGPlllavallgAFLTAFYSF 425
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-465 4.06e-46

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 169.95  E-value: 4.06e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097   1 MSFMVFTSLVSMTLLSSSelngIMMELKIMNMLSSSLSFSVSMDKTSLSFMMMISMVTCSVLPFSTMYMESYNKKKKFFL 80
Cdd:MTH00207   17 MSILMFPLSLYLMMCNKT----ILIEWEIFTISSSPINFTIILDPTGTLFSSTVLFISANVLLFAKTYMQEDKFLSRFIS 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  81 IMMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMMYQNQKTMMNSMLTMFFNRIGDFLMFFSIMMFMNNMEekfCNI 160
Cdd:MTH00207   93 LVLLFVLSMNMLIFFPHLMILLLGWDGLGLVSFILVIYYQNPKSLGAGMITALTNRIGDVMLLLSIGWTLNQGH---WSI 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 161 LSMNSKSLTNL-SIALMLTSMTKSAQVPLSAWLPAAMSAPTPISAMVHSSTLVTAGIYIILKMNESMKDSMW---MLTST 236
Cdd:MTH00207  170 TNMWQTDMNNYiALSIMIAAMTKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLIRFYPFLSSTYWfnpALLLT 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 237 TSITLMLASMAANMETDLKKIIAFSTMSQISIIMMMISMNMKTSGMMHMINHAMFKTLLFMTAGSTFLKKWMEQDSRKTK 316
Cdd:MTH00207  250 ASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMPKLALFHLITHALFKALLFVCAGSLIHSHHHSQDLRTMG 329

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 317 SSKTMNKLYKSSLTSSIVSMSGIPFSCSFFSKDKFLEEMKWENKNSAM-SFIMAASSLATVKKNKKILQSM----KNDKM 391
Cdd:MTH00207  330 NLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMiLMIFLATALTAAYSTRFTLAVLwspnSSSPY 409

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2091982097 392 NSASIKKMSIQ-PFSIMSMVTITIGSVNTWT----NEYLTKPILYKMEIKMNNLMIFSIMMNEMKSKMKKTKMWSNNMM 465
Cdd:MTH00207  410 HHLEDEDKSLTtPMLLLTLGAITSGSALNWWlptpQEEPILPLQYKLLPLLVVTLGALLAWLFTTPNITKTPLLINNPL 488
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 44-354 3.69e-43

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 162.07  E-value: 3.69e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  44 DKTSLSFMMMISMVTCSVLPFSTMYMESYNKKKKFFLIMMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMMYQNQK 123
Cdd:TIGR01974  82 DGLSLTMLVVVTGVGSLVHIYSIGYMAHDEGYSRFFAYLNLFTFSMLMLVLADNFLQLFFGWEGVGLCSYLLIGFWYKKP 161

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 124 TMMNSMLTMF-FNRIGDFLMFFSIM-MFMNNMEEKFCNILSMNSKS----LTNLSIALMLTSMTKSAQVPLSAWLPAAMS 197
Cdd:TIGR01974 162 SANNAAIKAFvVNRVGDFGLLLGIFlIFWYFGTLNFQEVFALAPGAffsaLTLICLLLFIGAMGKSAQLPLHTWLPDAME 241

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 198 APTPISAMVHSSTLVTAGIYIILKMN---ESMKDSMWMLTSTTSITLMLASMAANMETDLKKIIAFSTMSQISIIMMMIS 274
Cdd:TIGR01974 242 GPTPVSALIHAATMVTAGVYLVARTSplfELSPTALYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALG 321

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 275 MNMKTSGMMHMINHAMFKTLLFMTAGSTFLKKWMEQDSRKT-KSSKTMNKLYKSSLTSSIvSMSGIPFSCSFFSKDKFLE 353
Cdd:TIGR01974 322 VGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMgGLRKKMPVTYITFLIGSL-ALIGFPGFAGFFSKDLILE 400


                  .
gi 2091982097 354 E 354
Cdd:TIGR01974 401 A 401
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 47-368 4.55e-42

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 157.77  E-value: 4.55e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  47 SLSFMMMISMVTCSVLPFSTMYMESYNKKKKFFLIMMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMMYQNQKTMM 126
Cdd:MTH00095   47 SLLFSLILLLVTLSVLVFSSYYMNGELNFNYFYFVLLIFVGSMFMLNFSNSVFTMLLSWDLLGISSFFLVLFYNNWDSNS 126

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 127 NSMLTMFFNRIGDFLMFFSIMMFMnnmeeKFCNILSMNSKSLTNLSIALMLTSMTKSAQVPLSAWLPAAMSAPTPISAMV 206
Cdd:MTH00095  127 GAMNTALTNRIGDFFIFLFFSGFI-----FSSYYFFSFSFFSSSMILMLLLTSFTKSAQFPFSSWLPKAMSAPTPVSSLV 201

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 207 HSSTLVTAGIYIILKMNESM--KDSMWMLTSTTSITLMLASMAANMETDLKKIIAFSTMSQISIIMMMISMNMKTSGMMH 284
Cdd:MTH00095  202 HSSTLVTAGLILLMNFSYLIlnMNVMKIMLLIGLFTMFFSSLSALVEEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIH 281

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 285 MINHAMFKTLLFMTAGSTFLKKWMEQDSRKTKSSKTMNKLYKSSLTSSIVSMSGIPFSCSFFSKDKFLEEMKWENKNSAM 364
Cdd:MTH00095  282 LLSHALFKSCLFMQVGYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFF 361


                  ....
gi 2091982097 365 SFIM 368
Cdd:MTH00095  362 SLMF 365
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 6-355 4.69e-38

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 147.62  E-value: 4.69e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097   6 FTSLVSMTLLSSSELNGIMMELKIMNMLSSSLSFSVSMDKTSLSFMMMISMVTCSVLPFSTMYMESYNKKKKFFLIMMMF 85
Cdd:MTH00004   45 LISLIPLTLFLNSGTESITTNWPWIFTTTFNIPISFKLDQYSLMFLPIALFVTWSILEFSTWYMASDPHITKFFKYLLIF 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  86 LSSMMILITSESLISTVTGWDMLGVTSIALIMMYQNqKTMMNS--MLTMFFNRIGDFLMFFSI---MMFMNNMEekFCNI 160
Cdd:MTH00004  125 LIAMLILITANNMFQLFIGWEGVGIMSFLLIGWWSG-RAEANTaaLQAIIYNRIGDIGLILSMawlAMTLNTWE--IQQL 201

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 161 LSMNSKSLTnLSIALMLTSMTKSAQVPLSAWLPAAMSAPTPISAMVHSSTLVTAGIYIILKMNESMKDSMWMLTSTT--- 237
Cdd:MTH00004  202 FSPTQTPTL-PLLGLILAATGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRTHPLLQNNQTALTICLclg 280

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 238 SITLMLASMAANMETDLKKIIAFSTMSQISIIMMMISMNMKTSGMMHMINHAMFKTLLFMTAGSTFLKKWMEQDSRKTKS 317
Cdd:MTH00004  281 ALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHISTHAFFKAMLFLCSGSIIHNLNNEQDIRKMGG 360

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 2091982097 318 SKTMNKLYKSSLTSSIVSMSGIPFSCSFFSKDKFLEEM 355
Cdd:MTH00004  361 LQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETL 398
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 6-376 9.12e-38

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 146.59  E-value: 9.12e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097   6 FTSLVSMTLLSSSELNGIMMELKIMNMLSSSLSFSVSMDKTSLSFMMMISMVTCSVLPFSTMYMESYNKKKKFFLIMMMF 85
Cdd:MTH00066   43 FISLIPLMIFINQGLESITTSFHWMNIFNFNINSSFKFDQYSIIFLPIALFVTWSILEFAIWYMHSDPKINRFFKYLLIF 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  86 LSSMMILITSESLISTVTGWDMLGVTSIALIMMYqNQKTMMNS--MLTMFFNRIGD---FLMFFSIMMFMNNMEekFCNI 160
Cdd:MTH00066  123 LIAMMILVTANNLFQLFIGWEGVGIMSFLLIGWW-HARADANTaaLQAVLYNRVGDiglILSMAWLAMNTNSWE--LQQI 199

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 161 LSMNSKSLTNLsIALMLTSMTKSAQVPLSAWLPAAMSAPTPISAMVHSSTLVTAGIYIILKMNESMKDSMWMLT---STT 237
Cdd:MTH00066  200 FLLNDNSTLPL-LGLILAAAGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLLENNQTALTiclCLG 278

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 238 SITLMLASMAANMETDLKKIIAFSTMSQISIIMMMISMNMKTSGMMHMINHAMFKTLLFMTAGSTFLKKWMEQDSRKTKS 317
Cdd:MTH00066  279 ALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFFHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGG 358

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 318 SKTMNKLYKSSLTSSIVSMSGIPFSCSFFSKDKFLEEMKWENKNS-AMSFIMAASSLATV 376
Cdd:MTH00066  359 LQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSwALILTLIATSFTAV 418
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 44-354 1.06e-35

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 141.06  E-value: 1.06e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  44 DKTSLSFMMMISMVTCSVLPFSTMYMESYNKKKKFFLIMMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMMYQNQK 123
Cdd:PRK06590   83 DGLSATMLVVVTGVSFLVHIYSIGYMAHDEGYRRFFAYLNLFTFSMLMLVLSDNLLQLFFGWEGVGLCSYLLIGFWYKKP 162

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 124 TMMNSMLTMFF-NRIGDFLMFFSIM-MFMN----NMEEKFCNILSMNSKS---LTNLSIALMLTSMTKSAQVPLSAWLPA 194
Cdd:PRK06590  163 SAGAAAMKAFIvNRVGDVGLALGIFlLFAEfgslNYDEVFAAAPQFFGLGwsaLTLICLLLFIGAMGKSAQFPLHTWLPD 242

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 195 AMSAPTPISAMVHSSTLVTAGIYIILKMN---ESMKDSMWMLTSTTSITLMLASMAANMETDLKKIIAFSTMSQISIIMM 271
Cdd:PRK06590  243 AMEGPTPVSALIHAATMVTAGVYLVARMSplfELSPEALLFVAIVGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFL 322

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 272 MISMNMKTSGMMHMINHAMFKTLLFMTAGSTFLKKWMEQDSRKtkssktMNKLYKS----SLTSSI--VSMSGIPFSCSF 345
Cdd:PRK06590  323 ALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRK------MGGLRKKmpvtYATFLIgtLALIGIPPFAGF 396


                  ....*....
gi 2091982097 346 FSKDKFLEE 354
Cdd:PRK06590  397 FSKDEILEA 405
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 47-353 4.28e-35

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 139.06  E-value: 4.28e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  47 SLSFMMMISMVTCSVLP--FSTMYMESYNKKKKFFLIMMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMMY----Q 120
Cdd:MTH00020   80 GLVAIMLLVVTTVSTLVhiFSTAYMRGDPHIPRFMSYLSLFTFLMVVLVTSDNYLQLFIGWEGVGLCSYLLINFWltriE 159

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 121 NQKTMMNSMLTmffNRIGD---FLMFFSIMMFMNNMEekFCNILSM----NSKSLTNLSIALMLTSMTKSAQVPLSAWLP 193
Cdd:MTH00020  160 ANKAAIKAMLV---NRVGDiglLLAMFLLWDRFGSLD--FSSVFNMvvsaPSSDITLICLFLFIGAVGKSAQLGLHTWLP 234

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 194 AAMSAPTPISAMVHSSTLVTAGIYIILKMNESMKDSMWMLTSTT---SITLMLASMAANMETDLKKIIAFSTMSQISIIM 270
Cdd:MTH00020  235 DAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQAPLALIIVTivgSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMV 314

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 271 MMISMNMKTSGMMHMINHAMFKTLLFMTAGSTFLKKWMEQDSRKTKSSKTMNKLYKSSLTSSIVSMSGIPFSCSFFSKDK 350
Cdd:MTH00020  315 VACGLSHYSISLFHLMNHAFFKALLFLSAGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDL 394


                  ...
gi 2091982097 351 FLE 353
Cdd:MTH00020  395 ILE 397
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 44-353 5.33e-35

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 138.95  E-value: 5.33e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  44 DKTSLSFMMMISMVTCSVLPFSTMYMESYNKKKKFFLIMMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMMYQNQK 123
Cdd:MTH00208  106 DFYFILFFSVALFVTWSIIEFSHYYMSNDPNKNAFFRLLIIFLLNMLILTSSNNLFLLFIGWEGVGFLSFLLISWWTTRN 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 124 TMMNSML-TMFFNRIGD--FLMFFSIMMFMNNmEEKFCNILSMNSKSLTNLSIAL---MLTSMTKSAQVPLSAWLPAAMS 197
Cdd:MTH00208  186 DANSSALqAVIYNRIGDigIILFLSLSLINFN-SWNLNEILSLNNSNSFLINILLfgiLLAAAGKSAQFGLHPWLPAAME 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 198 APTPISAMVHSSTLVTAGIYIILKMNESMKDSMWMLTSTT---SITLMLASMAANMETDLKKIIAFSTMSQISIIMMMIS 274
Cdd:MTH00208  265 GPTPVSALLHSSTMVVAGVFLLIRTSPLISNSPWFLSLCLilgSLTALFAASTAISQHDIKKIIAYSTTSQLGLMVVAIG 344

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2091982097 275 MNMKTSGMMHMINHAMFKTLLFMTAGSTFLKKWMEQDSRKTKSSKTMNKLYKSSLTSSIVSMSGIPFSCSFFSKDKFLE 353
Cdd:MTH00208  345 LNQPNLALFHICTHAFFKAMLFLCSGSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILE 423
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-376 2.79e-33

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 133.82  E-value: 2.79e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097   1 MSFMVFTSLVSMTLLSSSELNGIMMELKIMNMLSSSLSFSVSMDKTSLSFMMMISMVTCSVLPFSTMYMESYNKKKKFFL 80
Cdd:MTH00108   40 ISYAFIISLIPTMMFIHSGQEMIISNWHWMTIQTLKLSLSFKLDYFSMIFIPVALFVTWSIMEFSMWYMHSDPNINRFFK 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  81 IMMMFLSSMMILITSESLISTVTGWDMLGVTSIALI-MMYQNQKTMMNSMLTMFFNRIGDFLMFFSIMMFMNNMEE-KFC 158
Cdd:MTH00108  120 YLLLFLITMLILVTANNLFQLFIGWEGVGIMSFLLIgWWYGRTDANTAALQAILYNRIGDIGFILAMAWFLLNLNSwDLQ 199

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 159 NILSMNSKSLTNLSIALMLTSMTKSAQVPLSAWLPAAMSAPTPISAMVHSSTLVTAGIYIILKMNESMKDSMWMLTSTT- 237
Cdd:MTH00108  200 QIFMLNPNNSNLPLMGLLLAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRFHPLMENNKTIQTLTLc 279

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 238 --SITLMLASMAANMETDLKKIIAFSTMSQISIIMMMISMNMKTSGMMHMINHAMFKTLLFMTAGSTFLKKWMEQDSRKt 315
Cdd:MTH00108  280 lgAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNLNDEQDIRK- 358

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2091982097 316 kssktMNKLYK------SSLTSSIVSMSGIPFSCSFFSKDKFLEEMKWENKNS-AMSFIMAASSLATV 376
Cdd:MTH00108  359 -----MGGLFKtlpftsTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAwALLITLIATSLTAA 421
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 44-366 9.83e-32

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 129.69  E-value: 9.83e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  44 DKTSLSFMMMISMVTCSVLPFSTMYMESYNKKKKFFLIMMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMMY---- 119
Cdd:MTH00032   79 DTLSVTMLLVISSISTLVHIYSTSYMSDDPHVPRFLCYLSLFTFLMMVLVTSDNYLQLFIGWEGVGVCSYLLVAFWttri 158

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 120 QNQKTMMNSMLTmffNRIGDFLMFFSIMMFMNNMEEkfCNILSMNSKSLTN----------------------LSIALML 177
Cdd:MTH00032  159 QANKAAIKAIVV---NRVGDVGVILGMVLIYKTIGS--LDFLTFNGGSVGSgimdrgyygggayesplapfaiIGILLLI 233

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 178 TSMTKSAQVPLSAWLPAAMSAPTPISAMVHSSTLVTAGIYIILK---MNESMKDSMWMLTSTTSITLMLASMAANMETDL 254
Cdd:MTH00032  234 GCIGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRsfpLFEKAPLTLLIITIFGALTAFFAATVGLVQNDL 313

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 255 KKIIAFSTMSQI-SIIMMMISMNMKTSGMMHMINHAMFKTLLFMTAGSTF-LKKWMEQDSRKTKS-SKTMNKLYKSSLTS 331
Cdd:MTH00032  314 KKVIAYSTCSQLgYMVLIIGIEGSHNVGLFHLVNHAFFKALLFLSAGSVIhSTTVDEQDMRKMGGlIHSIPFTYTMMLIG 393

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 2091982097 332 SIvSMSGIPFSCSFFSKDKFLeEMKWENKNSAMSF 366
Cdd:MTH00032  394 SF-SIMGLPYLTGFYSKDLIL-ELTYSGRNMGIPF 426
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 47-353 1.56e-31

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 128.59  E-value: 1.56e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  47 SLSFMMMISMVTCSVLP--FSTMYMESYNKKKKFFLIMMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMMY----Q 120
Cdd:MTH00210   80 SLTSTMLIVITSVSALVhiYSTGYMSGDPHIPRFMSYLSLFTFLMIVLVTSDNYVQLFIGWEGVGLCSYLLINFWltriK 159

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 121 NQKTMMNSMLTmffNRIGDF-LMFFSIMMFMNNMEEKFCNILSM-----NSKSLTNLSIALMLTSMTKSAQVPLSAWLPA 194
Cdd:MTH00210  160 ANKAAIKAMLI---NRVGDIgLVLAMIMILKEFGTLEFSTISSLlvtniNKESLTIICLLLFIGAVGKSAQLGLHTWLPD 236

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 195 AMSAPTPISAMVHSSTLVTAGIYIILKMNESMKDSMWMLTSTTSITLMLASMAAN---METDLKKIIAFSTMSQISIIMM 271
Cdd:MTH00210  237 AMEGPTPVSALIHAATMVTAGVFLIIRSGPLFEGSPLALTIVTILGALTAFFAATvgvVQNDLKKVIAYSTCSQLGYMVM 316

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 272 MISMNMKTSGMMHMINHAMFKTLLFMTAGSTFLKKWMEQDSRKTKS-SKTMNKLYKSSLTSSIvSMSGIPFSCSFFSKDK 350
Cdd:MTH00210  317 VCGISNYSTSLFHLMNHAFFKALLFLSAGSVIHAVSDEQDMRKMGGlIKSIPFTYVMILIGSL-SLMGFPYLTGFYSKDL 395


                  ...
gi 2091982097 351 FLE 353
Cdd:MTH00210  396 ILE 398
2a6301s01 TIGR00940
Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial ...
 43-354 2.02e-31

Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterized systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273353 [Multi-domain]  Cd Length: 793  Bit Score: 129.20  E-value: 2.02e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  43 MDKTSLSFMMMISMVTCSVLPFSTMYMESYNKKKKFFLIMMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMMY-QN 121
Cdd:TIGR00940  73 MDGLALLFSLLITGIGVLVVLYSIYYLSKEEPLPNFYAYLLAFMGAMLGVVLSDNLILLYVFWELTSIVSFLLISYWhHR 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 122 QKTMMNSMLTMFFNRIGDFLMFFSIMMF--------MNNMEEKFCNILsmNSKSLTNLSIALMLTSMTKSAQVPLSAWLP 193
Cdd:TIGR00940 153 AHSRYGAQKSLTITVFGGLAMLGGLILLgkitgsfsIDAVIASADAIR--NSPLFGTAMVLVLLGAFTKSAQFPFHIWLP 230

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 194 AAMSAPTPISAMVHSSTLVTAGIYIILKMNESMKDS---MWMLTSTTSITLMLASMAANMETDLKKIIAFST-------- 262
Cdd:TIGR00940 231 DAMEAPTPVSAYLHSATMVKAGLYLLARFTPVFAGTeawFWIVGLAGLITLLWGSYFAIFQQDLKGILAFSTisqlglim 310

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 263 --------MSQISIIMMMISMNMKTSGMMHMINHAMFKTLLFMTAGSTFlkkwMEQDSRKTKSSKTMNKLYKSSLTSSIV 334
Cdd:TIGR00940 311 vllglgspSYHYQGDDSKIYALAAVAAVFHLINHATFKGSLFMAAGIID----HETGTRDIRKLGGLFHIMPITFTLAMI 386

                         330       340
                  ....*....|....*....|...
gi 2091982097 335 ---SMSGIPFSCSFFSKDKFLEE 354
Cdd:TIGR00940 387 asaAMAGVPPFNGFLSKEMFFAE 409
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 43-300 4.68e-30

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 124.65  E-value: 4.68e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  43 MDKTSLSFMMMISMVTCSVLPFSTMYMESYNKKKKFFLIMMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMMYQNQ 122
Cdd:PRK12647   62 LDGLSLTFALLITGIGTLIVLYAGGYLKGHPDLGRFYSYILLFMASMLGLVLSDNLITLFVFWELTSITSFLLIGFNHER 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 123 KTMMNSMLTMFFNRIGDFLMFFSIMMFMNNMEEKF--CNILSMN----SKSLTNLSIALMLT-SMTKSAQVPLSAWLPAA 195
Cdd:PRK12647  142 EAARRAALQALLVTGGGGLALLAGLILLGNVTGTYslSELLASGdvirEHPLYLAILLLVLGgAFTKSAQFPFHFWLPNA 221

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 196 MSAPTPISAMVHSSTLVTAGIYIILKMNESMKDS---MWMLTSTTSITLMLASMAANMETDLKKIIAFSTMSQISIIMMM 272
Cdd:PRK12647  222 MEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTplwQTILPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVML 301

                         250       260       270
                  ....*....|....*....|....*....|.
gi 2091982097 273 ISMNMK---TSGMMHMINHAMFKTLLFMTAG 300
Cdd:PRK12647  302 LGLGSElaiKAAVLFLVAHSLYKGALFMVAG 332
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 43-348 5.15e-30

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 121.79  E-value: 5.15e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  43 MDKTSLSFMMMISMVTCSVLPFSTMYMESYNKKKKFFLIMMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMMYQNQ 122
Cdd:COG0651    74 ADRLSALFLLLTALVALAVLLYSIGYMRHERRGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTK 153

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 123 KTMMNSMLTMFFNRIGDFLMFFSIMMFMN-----NMEEkFCNILSMNSKSLTNLSIALMLTS-MTKSAQVPLSAWLPAAM 196
Cdd:COG0651   154 EALRAGLKYLILNLVGSALFLLGVGLLYGatgtlNMAD-LAARLAELDPGLLLAAFALLLVGfGIKAALFPLHFWLPDAY 232

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 197 S-APTPISAMVhSSTLVTAGIYIILKM------NESMKDSMWMLTSTTSITLMLASMAANMETDLKKIIAFSTMS---QI 266
Cdd:COG0651   233 PaAPSPVSALL-SGLLTKVGVYAILRVltllfgADPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSqigYI 311

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 267 SIIMMMISMNMKTSGMMHMINHAMFKTLLFMTAGSTFLKkwmeqdsRKTKSSKTMNKLYKSS-LTS-----SIVSMSGIP 340
Cdd:COG0651   312 LLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERA-------TGTRDLDKLGGLGKRMpLTAaafliGALALAGLP 384


                  ....*...
gi 2091982097 341 FSCSFFSK 348
Cdd:COG0651   385 PLSGFVSK 392
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-352 1.28e-29

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 123.21  E-value: 1.28e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  52 MMISMVT---CSVLPFSTMYMESYNKKKKFFLIMMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMMYQNQKTMMNS 128
Cdd:PRK07376   95 VMLVLVTtvaLLVMIYSDGYMAHDPGYVRFFAYLSLFSSSMLGLVISPNLVQIYVFWELVGMCSYLLVGFWYDRKGAADA 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 129 MLTMFF-NRIGDFLMFFSIMMF--------MNNMEEKFCNILSMNSKSL---TNLSIALMLTSMTKSAQVPLSAWLPAAM 196
Cdd:PRK07376  175 AQKAFVvNRVGDFGLLLGILGLfwatgsfdFDGIADRLSELVSSGAVSGwlaLLLCILVFLGPMAKSAQFPLHVWLPDAM 254

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 197 SAPTPISAMVHSSTLVTAGIYIILKMN---ESMKDSMWMLTSTTSITLMLASMAANMETDLKKIIAFSTMSQISIIMMMI 273
Cdd:PRK07376  255 EGPTPISALIHAATMVAAGVFLVARMYpvfEQFPAVMTVIAWTGAITAFLGASIALTQNDIKKGLAYSTISQLGYMVMAM 334

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 274 SMNMKTSGMMHMINHAMFKTLLFMTAGSTFlkKWME----------QDSRktksskTMNKLYK----SSLTSSI--VSMS 337
Cdd:PRK07376  335 GCGAYSAGLFHLMTHAYFKAMLFLGSGSVI--HGMEevvghdpvlaQDMR------LMGGLRKympiTAITFLIgcLAIS 406

                         330
                  ....*....|....*
gi 2091982097 338 GIPFSCSFFSKDKFL 352
Cdd:PRK07376  407 GIPPFAGFWSKDEIL 421
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 1-355 4.72e-28

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 118.01  E-value: 4.72e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097   1 MSFmvFTSLVSMTLLSSSELNGIMMELKIMNMLSSSLSFSVSMDKTSLSFMMMISMVTCSVLPFSTMYMESYNKKKKFFL 80
Cdd:MTH00137   46 TAF--FVSLLPLFLFLNQGAETIITNWNWMNTLTFDINISFKFDHYSIIFTPIALYVTWSILEFASWYMHADPNMNRFFK 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  81 IMMMFLSSMMILITSESLISTVTGWDMLGVTSIALI-MMYQNQKTMMNSMLTMFFNRIGDFLMFFSIMMFMNN-----ME 154
Cdd:MTH00137  124 YLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIgWWYGRADANTAALQAVIYNRVGDIGLILAMAWMATNlnsweIQ 203

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 155 EKFCNILSMNsksLTNLSIALMLTSMTKSAQVPLSAWLPAAMSAPTPISAMVHSSTLVTAGIYIILKMNESMKDSMWMLT 234
Cdd:MTH00137  204 QIFALSKDFD---LTLPLLGLILAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRLSPLMENNQTALT 280

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 235 STT---SITLMLASMAANMETDLKKIIAFSTMSQISIIMMMISMNMKTSGMMHMINHAMFKTLLFMTAGSTFLKKWMEQD 311
Cdd:MTH00137  281 TCLclgALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQD 360

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 2091982097 312 SRKTKSSKTMNKLYKSSLTSSIVSMSGIPFSCSFFSKDKFLEEM 355
Cdd:MTH00137  361 IRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEAL 404
PRK12650 PRK12650
DUF4040 family protein;
43-376 4.87e-28

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 118.99  E-value: 4.87e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  43 MDKTSLSFMMMISMVTCSVLPFSTMYMESYNKKKKFFLIMMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMMyQNQ 122
Cdd:PRK12650   77 ADALSLFFALLALVIGAVVFIYSARYLPRKKGNTSFYLLMTAFMAAMLLLVLADDVVVLFVAWELVSLASFFLIAR-SGS 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 123 KTMMNSMLTMFFNRIGDFLMFFSIMMFMN-----NMEEkfcnIL-----SMNSKSLTNLSIALMLTSMTKSAQVPLSAWL 192
Cdd:PRK12650  156 GGEAGSIRTLILTFFGGLTLLAAVAIAATqtgttSLSG----ILhsdvwAEKPGLTTVVAVLIAVAAFTKSAQFPFHFWL 231

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 193 PAAMSAPTPISAMVHSSTLVTAGIYIILKMNESMKDSM---WMLTSTTSITLMLASMAANMETDLKKIIAFSTMSQISII 269
Cdd:PRK12650  232 PEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVAvwnWLLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWI 311

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 270 MMMI---SMNMKTSGMMHMINHAMFKTLLFMT-------AGStflkkwmeQDSRKTKSSKTMNKLYKSSLTSSIVSMSGI 339
Cdd:PRK12650  312 VATIgvgTPFALTAAVVHTLAHALFKSSLFMLigvvdhqAGT--------RDIRRLGSLWRRMPFTFVSVTIAALSMAAV 383

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 2091982097 340 PFSCSFFSKDKFLEEMkWENK--NSAMSFIMAASSLATV 376
Cdd:PRK12650  384 PPLFGFVSKEGMLTAF-LEAPggNAGVVLLLVGAALGAV 421
PRK12646 PRK12646
DUF4040 family protein;
43-353 5.98e-27

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 115.24  E-value: 5.98e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  43 MDKTSLSFMMMISMVTCSVLPFSTMYMES-YNKKKKFFLIMMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMMYQN 121
Cdd:PRK12646   76 LDGLSLMFSLIISLIGIAVFFYATQYLSSrKDNLPRFYFYLTLFMFSMIGIVLSDNTILMYVFWELTSVSSFLLISYWYN 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 122 QKTMMNSMLTMFFNRI--GDFLMFFSIMMFM----NNMEEKFCNILSMNSKSLTNLSIALMLT-SMTKSAQVPLSAWLPA 194
Cdd:PRK12646  156 NGDSQFGAIQSFMITVfgGLALLVGFIMLYImtgtNNITEILGQADHIKNHGLFIPMIFMFLLgAFTKSAQFPFHIWLPR 235

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 195 AMSAPTPISAMVHSSTLVTAGIYIILKMNESMKDSMWMLTSTTS---ITLMLASMAANMETDLKKIIAFSTMS------- 264
Cdd:PRK12646  236 AMAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSNMYIYIVTFvglITMLFGSITALKQWDLKGILAYSTISqlgmima 315

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 265 ----------QISIIMMMISMNMKTSGMMHMINHAMFKTLLFMTAGSTFlkkwMEQDSRKTKSSKTMNKLYKSS---LTS 331
Cdd:PRK12646  316 mvgigggyaqHQQDAIASIYVFVLFAALFHLMNHAIFKCALFMGVGIID----HEAGTRDIRILSGMRQLFPKMnlvMTI 391

                         330       340
                  ....*....|....*....|..
gi 2091982097 332 SIVSMSGIPFSCSFFSKDKFLE 353
Cdd:PRK12646  392 AALSMAGVPFLNGFLSKEMFLD 413
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 43-355 1.82e-26

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 113.87  E-value: 1.82e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  43 MDKTSLSFMMMISMVTCSVLPFSTMYMesyNKKKK----FFLIMMMFLSSMMILITSESLISTVTGWDMLGVTSIALI-- 116
Cdd:PRK12645   76 VDGLSLLFALLITGIGSLVVLYSIYYL---SKKKEqlgnFYVYLLLFMGAMLGVVLSDNLIVLYLFWELTSISSFLLIsy 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 117 ------MMYQNQKTMMnsmLTMF--FNRIGDFLMF------FSIMMFMNNMEEkfcnilSMNSKSLTNLSIALMLTSMTK 182
Cdd:PRK12645  153 wyereaSRYGAQKSML---ITVFggLSMLGGFILLyimtgsFSIREMIANADE------IQNSPLFIPAMILILLGAFTK 223

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 183 SAQVPLSAWLPAAMSAPTPISAMVHSSTLVTAGIYIILKMNESMKDS---MWMLTSTTSITLMLASMAANMETDLKKIIA 259
Cdd:PRK12645  224 SAQFPFYIWLPDAMEAPTPVSAYLHSATMVKAGIYLVARFTPIFAGSqvwFWTVTLVGLITLFWGSLNAVKQTDLKGILA 303

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 260 FST----------------MSQISIIMMMISMNMKTSGMMHMINHAMFKTLLFMTAG----STFLKkwmeqDSRKTKSSK 319
Cdd:PRK12645  304 FSTvsqlglimsllgigaaSLHYQGDDSKIYAAAITAAIFHLINHATFKGSLFMIVGivdhETGTR-----DIRKLGGLM 378

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 2091982097 320 TMNKLYKSSLTSSIVSMSGIPFSCSFFSKDKFLEEM 355
Cdd:PRK12645  379 TIMPITFTIALIGALSMAGLPPFNGFLSKEMFFESM 414
ND5 MTH00063
NADH dehydrogenase subunit 5; Provisional
 8-355 4.65e-25

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214414 [Multi-domain]  Cd Length: 522  Bit Score: 108.43  E-value: 4.65e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097   8 SLVSMTLLSSSELNGIMMELKIMNMLSSSLSFSVSMDKTSLSFMMMISMVTCS--VLPFSTMYMESYNKKKKFFLIMMMF 85
Cdd:MTH00063    6 SLLLCLLIFFLFLVGVSSSVSLNFLSFGGYSWLINFDFDYVTFGVLLMLLICFyySLLYTFHYFGGSYASFLLNKLIVLF 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  86 LSSMMILITSESLISTVTGWDMLGVTSIALIMMYQNQKTMMNSMLTMFFNRIGDFLMFFSIMMFMnnmeekfcnilSMNS 165
Cdd:MTH00063   86 VLVMGILVLTGDFLSTLIFWEYLGVVSFFLILFYDNFLSLRASVVTLVSSRFGDVCLFLLIGLSC-----------WGGS 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 166 KSLTnLSIALMLTSMTKSAQVPLSAWLPAAMSAPTPISAMVHSSTLVTAGIYIILKMNESMKDSMWMLTSTTS--ITLML 243
Cdd:MTH00063  155 GSFL-CCLFFFLIVFTKSASFPFISWLLEAMRAPTPVSSLVHSSTLVAAGVWFVMRYDYLLGFSWLSIFFSVLllLTIFI 233

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 244 ASMAANMETDLKKIIAFSTMSQISIIMMMISMNMKTSGMMHMINHAMFKTLLFMTAGSTFLKKWMEQDSRKTKSSKTMNK 323
Cdd:MTH00063  234 TGVSSLFFSDLKKIVALSTCNNISWCVLYLIYGDVILSLFQLVSHGVSKCLLFMLVGDVMSGSGGSQSSNCVYSSILYGS 313

                         330       340       350
                  ....*....|....*....|....*....|..
gi 2091982097 324 LYKSSLTSSIVSMSGIPFSCSFFSKDKFLEEM 355
Cdd:MTH00063  314 WNLFYLFLLVLGLSGVPFIGVFFSKHFLLSSF 345
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 61-301 2.07e-23

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 103.13  E-value: 2.07e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  61 VLPFSTMYMESYNK-------KKKFFLIMMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMMYQNQKTM---MNSML 130
Cdd:PRK06525   91 VTLYSTGYMSPGNRehpvhegTGRYYAFLLLFIGAMAGLVYSSTLLGLLLFFEITGLCSWALISYYQSPKALrsaLKALL 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 131 TMFFNRIGDFLMFFSIMMFMNNMEekFCNILSMNSKSLTNLSIALMLTSMTKSAQVPLSAWLPAAMSAPTPISAMVHSST 210
Cdd:PRK06525  171 ITHIGSLGLYLAAATLFLQTGTFA--LSALSGLHGSLKYLVFLGILFAAWGKSAQLPFYSWLPDAMEAPTPASAYLHAAS 248

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 211 LVTAGIYI----ILKMNESMKDSMWMLTSTTSITLMLASMAANMETDLKKIIAFSTMSQISIIMMMISMNMKTS------ 280
Cdd:PRK06525  249 MVKVGVYIfaraIQSMGPIPHVIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAILGSrlaleg 328

                         250       260
                  ....*....|....*....|.
gi 2091982097 281 GMMHMINHAMFKTLLFMTAGS 301
Cdd:PRK06525  329 SIAYIFNHAFAKSLFFLVAGA 349
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 95-353 5.42e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 96.23  E-value: 5.42e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  95 SESLISTVTGWDMLGVTSIALIMMY-QNQKTMMNSMLTMFFNRIGDFLMFFSIMMFMNNMEEKFCNILSM------NSKS 167
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWgKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKaltgglNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 168 LTNLSIALMLTSMTKSAQVPLSAWLPAA-MSAPTPISAMVhSSTLVTAGIYIILKMNESMKDSMW----MLTSTTSITLM 242
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAyEGAPTPVSALL-AATLVKAGGYGLIRRSLLYLPSSPfiqqILLILAIISML 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 243 LASMAANMETDLKKIIAFSTMS---QISIIMMMISMNMKTSGMMHMINHAMFKTLLFMTAGSTFLKKWMEQDSRKTKSSK 319
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSIShmgYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLA 239

                         250       260       270
                  ....*....|....*....|....*....|....
gi 2091982097 320 TMNKLYKSSLTSSIVSMSGIPFSCSFFSKDKFLE 353
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 181-354 4.89e-21

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 97.18  E-value: 4.89e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 181 TKSAQVPLSAWLPAAMSAPTPISAMVHSSTLVTAGIYIILKMNESMKDS---MWMLTSTTSITLMLASMAANMETDLKKI 257
Cdd:PRK12648  219 TKSAQFPFHFWLPHAMAAPTPVSAYLHSATMVKAGVFLLARLWPVLAGTeewFWIVGGAGLITLLLGAYFALFQHDLKGL 298

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 258 IAFSTMsqisiimmmismnmktS-------------------GMMHMINHAMFKTLLFMTAG------STflkkwmeQDS 312
Cdd:PRK12648  299 LAYSTI----------------ShlglitlllglgsplaavaAIFHIINHATFKASLFMAAGiidhetGT-------RDM 355

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 2091982097 313 RKtkssktMNKLYKS---SLTSSIV---SMSGIPFSCSFFSKDKFLEE 354
Cdd:PRK12648  356 RR------LSGLRRLmpiTATLAMVaaaAMAGVPLLNGFLSKEMFFAE 397
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 2-353 1.14e-20

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 96.05  E-value: 1.14e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097   2 SFMVFTSLVSMTLLSSSELNGIMMELKIMNMLSSSLSFSVSMDKTSLSFMMMISMVTCSVLPFSTMYMESYNKKKKFFLI 81
Cdd:PRK12649   37 AAIAFTSFALIAQVAPEVIHGTIITGSISWLPSAGVEFSIYADGLAVLIGLIASGIGVIIMSYSNGYMSHKEDLPRYYQY 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  82 MMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMMYQNQ-KTMMNSMLTMFFNRIGDFLMFFSIMMFMNNMEEKFCNI 160
Cdd:PRK12649  117 LLLFMGSMIGMVFSGNTIQLFIFWELTSITSFMLIGYWRHRpESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIAT 196

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 161 LSMNSKSLTNLS---------IALMLTSMTKSAQVPLSAWLPAAMSAPTPISAMVHSSTLVTAGIYIILKMNE--SMKDS 229
Cdd:PRK12649  197 ILQDSELIENIKghplflitlILIFIGAAAKSAQGPFYIWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPifSGTEA 276

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 230 MWMLTSTTSI-TLMLASMAANMETDLKKIIAFSTMSQISIIMMMISMNMK-------TSGMMHMINHAMFKTLLFMTAGs 301
Cdd:PRK12649  277 WFILVSGTGMiTMVLAGFLAFRQTDIKAILAYSTISQLAYLMTMYGYTTYhepglgvAAATFHLLNHATFKACLFLVAG- 355

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2091982097 302 TFLKKWMEQDSRKTKSSKtmNKLYKSSLTSSI--VSMSGIPFSCSFFSKDKFLE 353
Cdd:PRK12649  356 IVAHEAATRDIRKLGGLR--KEMPITFIVASIaaLAMAGIPPLNGFLSKEMFYE 407
ndhF CHL00025
NADH dehydrogenase subunit 5
 49-301 2.16e-19

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 91.88  E-value: 2.16e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  49 SFM-MMISMVTCSVLPFSTMYM---ESYnkkKKFFLIMMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMMYQNQKT 124
Cdd:CHL00025   94 SIMlILITTVGILVLIYSDNYMshdQGY---LRFFAYLSFFNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPI 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 125 MMNSMLTMFF-NRIGDFLMFFSIMMF--------MNNMEEKFCNILSMNSKSL---TNLSIALMLTSMTKSAQVPLSAWL 192
Cdd:CHL00025  171 AANACQKAFVtNRVGDFGLLLGILGFywitgsfeFRDLFEIFNNLIYNNEVNLlfaTLCAFLLFLGPVAKSAQFPLHVWL 250

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 193 PAAMSAPTPISAMVHSSTLVTAGIYIILKM---NESMKDSMWMLTSTTSITLMLASMAANMETDLKKIIAFSTMSQISII 269
Cdd:CHL00025  251 PDAMEGPTPISALIHAATMVAAGIFLVARLlplFIVIPYIMNLISLIGIITALLGATLALAQKDIKRGLAYSTMSQLGYM 330

                         250       260       270
                  ....*....|....*....|....*....|..
gi 2091982097 270 MMMISMNMKTSGMMHMINHAMFKTLLFMTAGS 301
Cdd:CHL00025  331 MLALGIGSYRAALFHLITHAYSKALLFLGSGS 362
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 82-300 2.70e-19

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 91.91  E-value: 2.70e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  82 MMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMMYQNQKT-----MMNSMLTMFfnriGDFLMFFSIMMFMNNMEE- 155
Cdd:PRK12644  112 LVAFAGAMFGLVTSDNLLLLYVFWELTTVLSFLLIGHYAERAAsrraaLQALLVTTA----GGLAMLVGIIILGQAAGTy 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 156 KFCNILSmNSKSLTNLSIALMLT---SMTKSAQVPLSAWLPAAMSAPTPISAMVHSSTLVTAGIYIILKMNESMKDS--- 229
Cdd:PRK12644  188 RLSELLA-DPPTGPAVSVAVVLIlvgALSKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVARLAPGFADVpvw 266

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2091982097 230 MWMLTSTTSITLMLASMAANMETDLKKIIAFSTMSQISIIMMMISMNMKT---SGMMHMINHAMFKTLLFMTAG 300
Cdd:PRK12644  267 RPTVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDaalAGLAMLLAHALFKAALFLVVG 340
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 43-417 1.29e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 79.48  E-value: 1.29e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  43 MDKTSLSFMMMISMVTCSVLPFSTMYME----SYNKKKKFFLIMMMFLSsmMILITSESLISTVTGWDMLGVTSIALIMM 118
Cdd:PRK06589   81 LEPLGLIFLLLIGFLWICALLYTPKYLAinniDSSSRFLFFFNLTILIG--VLIALSSDLFTMFVCYELLTISTAFLIGH 158

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 119 YQNQKTMMNSMLTMFFNRIGDFLMFFSIMMFM----NNMEEKFCNILSMNskslTNLSIALMLT-SMTKSAQVPLSAWLP 193
Cdd:PRK06589  159 TRNNISLSGGYKYLKILMISALLLFLPAVILIytktGNLDFVSGGLFSKN----QSIILLLMFIyGIAKTAIFPVHSWLP 234

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 194 AAMSAPTPISAMVHSSTLVTAGIYIILK----------MNESMKDSMWmLTSTTSITLMLASMAANMETDLKKIIAFSTM 263
Cdd:PRK06589  235 AAMVAHYPVSALLHAVIVVKTGLFCIYKillyifglsyLQRIFAEFNW-LIFIPIVSIFYSSLKALKTDNIKKILAYSTI 313

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 264 SQISIIMMMISMNMKTS---GMMHMINHAMFKTLLFMTAGSTFLKKWMEQDSRKTKSSKTMnKLYKSSLTSSIVSMSGIP 340
Cdd:PRK06589  314 SQLSLALLSAFILTPKAlgaAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLHGTSKSF-PLISFIISISSLSLIGIP 392

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 341 FSCSFFSKDKFLEEMKWENKNSAMSFIMAASSLATVKKNKKILQSMKNDKMNSAS----IKK---MSIQPFSIMSMVTIT 413
Cdd:PRK06589  393 IFSGFISKFLILLAASEQNQPWLSIIVMLVVIASSILSALYLLKILSSIYKPSLSensfITKslpYLMQISVITCCCALT 472


                  ....
gi 2091982097 414 IGSV 417
Cdd:PRK06589  473 LFYF 476
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 44-301 2.08e-15

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 79.00  E-value: 2.08e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  44 DKTSLSFMMMISMVTCSVLPFSTMY---MESYNKKKKFFLIMMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMM-Y 119
Cdd:PRK08667   76 DRLAAFFIILIGLVSLCVAIYSLGYnehMSSNERANLLSALTALFILSMLGVVASANTFSFLFFWEIMALSSFFLVMNdY 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 120 QNQKTMMNSMLTMFFNRIGD-FLMFFSIMMFMNNMEEKFcNILSMNSKSLTNLSIALMLTSMTKSAQVPLSAWLPAAMSA 198
Cdd:PRK08667  156 QEEETQRAGIFYFVMTQLSTvFLMLGIIVLFIQTGSFEL-SPLGASAGILSLVFLLLFLGFGIKAGIIPFHKWLPYAHPA 234

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 199 -PTPISAMVhSSTLVTAGIYIILK--MNESMKDSMW--MLTSTTSITLMLASMAANMETDLKKIIAFSTMSQISIIMM-- 271
Cdd:PRK08667  235 sPSNVSALM-SGVMLKVAVYGLVRflMDVLSPELWWgvLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMgi 313

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 2091982097 272 ------------MISMNMKTSGMMHMINHAMFKTLLFMTAGS 301
Cdd:PRK08667  314 glyvifgvygldTLALLALGGALFHSLNHALFKSLLFLTAGS 355
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 174-374 3.98e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 77.61  E-value: 3.98e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 174 ALMLTSMT-KSAQVPLSAWLPAAMSAPTPISAMVHSSTLVTAGIYIILKMNESMKDSM--------WMLTSTTSITLMLA 244
Cdd:PRK08375  206 GFVLLALAlKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFTVFGGDfrfalglgWLLAVLALLSMLVG 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 245 SMAANMETDLKKIIAFSTMSQISIIMMMISMNMKTS---GMMHMINHAMFKTLLFMTAGSTFLKkwmeqdsRKTKSSKTM 321
Cdd:PRK08375  286 SLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLAlaaGLLHLLHHALMKGALFLAAGAIEVT-------YGTRRLSEL 358

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2091982097 322 NKLYKSS--LTSSIV----SMSGIPFSCSFFSKDKFLEEMKWENKNSAMSFIMAASSLA 374
Cdd:PRK08375  359 SGLGRRMplTAAAFAvaslSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLA 417
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 107-348 1.44e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 73.08  E-value: 1.44e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 107 MLGVTSI---ALIMMYQNQKTMMNSMLT-MFFNRIGDFLMFFSIMMF--------MNNMEEKFCNILSMNSKSLT----- 169
Cdd:PRK12667  141 MLEVLSIsayGLVAYYRDRGDAVEAAIKyALIGAVGTTLYFLALAFLyatfgtlnMADLSAKIRGLSFPLTGGLAgnppl 220

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 170 NLSIALMLTS---MTKSAQVPLSAWLPAAMS-APTPISAMVhSSTLVTAGIYIILKM-------NESMKDSMWMLTS--- 235
Cdd:PRK12667  221 ALGVALALALwafTIKAAIFPNHFWLPDAHPaAPSPVSAML-SGLVVNVGAYAIIRFlytifgiSPSLIDFRAALSPili 299

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 236 -TTSITLMLASMAANMETDLKKIIAFSTMSQISIIMMMISMNMK---TSGMMHMINHAMFKTLLFMTAGStFLKkwmEQD 311
Cdd:PRK12667  300 iLGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQlglAAALFHIINHAIAKSLLFLASGV-FIH---AAG 375

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 2091982097 312 SRKTKSSKTMNKLY---KSSLTSSIVSMSGIPFSCSFFSK 348
Cdd:PRK12667  376 TRDIDELAGLGRKMpiaSFAFLIGALSLVGIPPLNGFFSK 415
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 173-349 7.91e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 67.28  E-value: 7.91e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 173 IALMLTSM-TKSAQVPLSAWLPAAMSAPTPISAMVHSSTLVTAGIYIILKMNEsMKDSMWMLTSTTSI-TLMLASMAANM 250
Cdd:PRK07234  187 FALIALGLlVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCAL-DVPGLDLIVRIFGVgTALLGVLFALL 265

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 251 ETDLKKIIAFSTMSQISIIMMMISmnmkTSGMMHmINHAMFKTLLFMTAGSTFLKKWMEQDSRKTKSSKTMnklyksSLT 330
Cdd:PRK07234  266 EKDLKRMLAFSTISQLGFILAAPL----VGGLYA-LAHGLVKSTLFLCAGALPSRNFTELISQMLGIGKWI------PLT 334

                         170
                  ....*....|....*....
gi 2091982097 331 SSIVSMSGIPFSCSFFSKD 349
Cdd:PRK07234  335 MASFSIAGFPLLAGFVSKV 353
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 43-301 4.21e-11

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 65.68  E-value: 4.21e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  43 MDKTSLSFMMMISMVTCSVLPFSTMYMESYNKKKK----FFliMMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMM 118
Cdd:PRK06521   78 LDALSAFFLLVISLLGAAASLYSLGYFREYEGKGPgamgFF--YNLFLASMVLVLLADDAFSFLVAWETMSLSSWFLVIA 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 119 YQNQKTMMN-SMLTMFFNRIGDFLMFFS-IMMFMNNMEEKFCNILSMNSKSLTNlSIALMLTSM---TKSAQVPLSAWLP 193
Cdd:PRK06521  156 NHREAEIRRaGFLYLLMAHAGALAILLAfGLLARESGSYDFAAMRAAHLSPFWA-SLVFLLALFgfgAKAGLVPLHVWLP 234

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 194 AAM-SAPTPISAMVhSSTLVTAGIYIILKMN-ESMKDSMW----MLTSTTSITLMLASMAANMETDLKKIIAFST----- 262
Cdd:PRK06521  235 RAHpAAPSHVSALM-SGVMLKVAIYGILRVVfDLLGAPGWwwgvLVLALGAISAVLGVLYALAEHDLKRLLAYSTienig 313

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 2091982097 263 ---------MSQISIIMMMISMNMKTSGMMHMINHAMFKTLLFMTAGS 301
Cdd:PRK06521  314 iifvglglaMVFIAYGMPLLAALALTAALYHLLNHALFKSLLFLGAGA 361
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 50-300 2.65e-10

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 62.48  E-value: 2.65e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  50 FMMMISMVT--CSVLPFSTMYMESYNKKKKFFLIMMMFLSSMmilITSESLISTVTGWDMLGVTSIALIMMYQNQKTMMN 127
Cdd:PRK08377   83 FVLIIAIVSfiMSIFSLKAVEVEPIDKYAMLFLLLMLGATGM---IATGDIFNLFVFMEITAITAYALTAYNKTGEAAEA 159

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 128 SMLTMFFNRIGDFLMFFSIMMFMN-----NMEEKFCNILSMNSkSLTNLSIALMLTSMTKSAQV-PLSAWLPAA-MSAPT 200
Cdd:PRK08377  160 SMKYIVLGGIGSSFFLIGVALIYGatgtlNMAHIAQLAGTIDP-TVAQVGLALLIFGLAVEAELfPLNAWAPDAyQAAPH 238

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 201 PISAMVhSSTLVTAGIY------IILKMNESMKDSMWMLTSTTSITLMLASMAANMETDLKKIIAFSTMSQISIIMMMIS 274
Cdd:PRK08377  239 PITVMF-SAFVVKAGLYamarilYLMQNANGWSSVLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALA 317

                         250       260
                  ....*....|....*....|....*....
gi 2091982097 275 MNMKT---SGMMHMINHAMFKTLLFMTAG 300
Cdd:PRK08377  318 LGTQAgvdAGVFHMINHAIVKALLFLAVG 346
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
61-302 2.38e-09

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 59.71  E-value: 2.38e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  61 VLPFSTMYMESYNKKKKFFLIMMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMMYQNQKTMMNSMLTMF-FNRIGD 139
Cdd:PRK08168   85 IGRFSHRYLQGEPGQRRYVRALAGVLAAVHLLVLSDHLLVLIAAWAAISLALHRLLCFYPDRPFARLAAHKKFiADRLAE 164

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 140 FLMFFSIMMFMNNMEEKFCNILSMN---SKSLTNLSIALMLTSMT---KSAQVPLSAWLPAAMSAPTPISAMVHSStLVT 213
Cdd:PRK08168  165 LLLLAAAALAYLEVGSLSLSALWAHlaaQGASPSLQAAALLLVLAvilKTAQLPVHGWLIQVMEAPTPVSALLHAG-VVN 243

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 214 AGIYIILKMNESMKDSM---WMLTSTTSITLMLASMAANMETDLKKIIAFSTMSQISIIMMMISMNMKTSGMMHMINHAM 290
Cdd:PRK08168  244 LGGFVLIRFAPLLEQAPparWLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECGLGLYELALLHLVAHSL 323

                         250
                  ....*....|..
gi 2091982097 291 FKTLLFMTAGST 302
Cdd:PRK08168  324 YKAHAFLSASEA 335
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 50-348 5.07e-09

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 58.85  E-value: 5.07e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  50 FMMMISMVtcsVLPFSTMYMESYNKKKK--FFLIMMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMMyQNQKTMMN 127
Cdd:PRK08668   73 FFAMISLL---VIFSVAFFMVSEKTKNDayFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPM-GKKESRKA 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 128 SMLTMFFNRIGDFLMFFSIMMFMNNME----EKFCNILSMNSKSLTNLSIALMLTSM--TKSAQVPLSAWLPAAMS-APT 200
Cdd:PRK08668  149 SLKYFVLSAIGAYAMLYAIFLIYAKTGtfdfADISQGLINDTSTGFALIVFLFLLAFgvAKAGIFPLHVWAPDAYSeAPQ 228

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 201 PISAMVhSSTLVTAGIYII---LKMNESMKDSMWMLTSTT------------SITLMLASMAANMETDLKKIIAFSTMSQ 265
Cdd:PRK08668  229 SFSAVL-SGQLSKLGAYGFllvLYVLPGTKLFSEFGTYRGvplfnyilawlgNISIIVGTLMAILQEDIKKLIAYSSVAN 307

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 266 ISIIMMMISMNMKTS---GMMHMINHAMFKTLLFMTAGSTFLKkwmeqdSRKTKSSKTMNKLYKSSLT-----SSIVSMS 337
Cdd:PRK08668  308 GGYILVGLGLGTSLGfagGLFHVFNHALFKGLFFLIFAAVIYR------TGTTKISEMGGLIEKMPFTfamylVAIISLA 381

                         330
                  ....*....|.
gi 2091982097 338 GIPFSCSFFSK 348
Cdd:PRK08668  382 GIPPMSGFASK 392
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 165-300 3.17e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 49.75  E-value: 3.17e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 165 SKSLTNLSIALMLTSM-TKSAQVPLSAWLPAAMS-APTPISAMVhSSTLVTAGIYIILKMNESMKDS------MWMLTST 236
Cdd:PRK08676  201 SPSVLGASFLFIFIGFlAKSGLVPFHTWLPAAYAkAPSVVSALL-SGTVLNIGIYGILRLSALLRQSgaaeqfSNVLIGL 279

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2091982097 237 TSITLMLASMAANMETDLKKIIAFSTMSQISIIMMMISMNMKTS---GMMHMINHAMFKTLLFMTAG 300
Cdd:PRK08676  280 GIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLAlfwMLFHMLAHSLVKSGLFFSAG 346
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 167-340 3.21e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 49.54  E-value: 3.21e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 167 SLTNLSIALMLTSM-TKSAQVPLSAWLPAAMS-APTPISAMVhSSTLVTAGIYIILKMNESMKDS-MWMLTSTTSITLML 243
Cdd:PRK06458  211 TLMKLAFVFLLIGFgTKVGLFPMHAWLPDAHSeAPSPVSALL-SGVLLNVALYAVLRYYILIDAAiGSDFPGRLLLIFGL 289

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 244 ASM--AANM---ETDLKKIIAFSTMSQISIIMMMISM---NMKTSGMMHMINHAMFKTLLFMTAGSTfLKKWMEQDSRKT 315
Cdd:PRK06458  290 LSVlvAAFFllrQRDIKRLFAYSSIEHMGLIAFALGIggpLGIFAALLHMLNHSLTKSAIFFASGNV-LQKYGTRDINVI 368

                         170       180
                  ....*....|....*....|....*
gi 2091982097 316 KSSKTMNKLYKSSLTSSIVSMSGIP 340
Cdd:PRK06458  369 RGLLKVSPLTGWGLMLGALAIAGMP 393
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 44-303 3.29e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 49.71  E-value: 3.29e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  44 DKTSLSFMMMISMVTCSVLPFSTMYMESYNKKKKFFLIMMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMMYQNQK 123
Cdd:PRK08376   89 DLFGAFMALIATIVSFLAVLYSISYMKHDTGLDKYYTLILLLELGMLGMAITGDLFNFFVFLEIMSIASYALVAFRNDTW 168

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 124 TMMNSMLT-MFFNRIGDFLMFFSIMMF--------MNNMEEKfcniLSMNSKSLTNLSIALMLTSMT-KSAQVPLSAWLP 193
Cdd:PRK08376  169 EAIEAGIKyMFVGSLASSMVLLGIALLygqygtlnMAYLAVK----MSENPTVVAKIALALFIAGLAmKSGAVPVHMWLP 244

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 194 AAMS-APTPISAMVHSSTLvtAGIYIILKMNES-------MKDSMWMLTSTTSITLMLASMAANMETDLKKIIAFSTMSQ 265
Cdd:PRK08376  245 DAYPaAPSSISAMLLVIKQ--AGLYALARVLFSiygpainLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQ 322

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2091982097 266 I---------------SIIMMMISMNMKTSGMMHMINHAMFKTLLFMTAGSTF 303
Cdd:PRK08376  323 IgymllglgvglaalgDPAMASYGEIALAGGIYHIVNHALYKALLFLTAGAVI 375
PRK08601 PRK08601
NADH dehydrogenase subunit 5; Validated
 159-301 9.73e-05

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 236310 [Multi-domain]  Cd Length: 509  Bit Score: 45.03  E-value: 9.73e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 159 NILSMNSKSLTNLSIALMLTSMTKSAQVPLSAWLPAAMSAPTPISAMVHSStLVTAGIYIILKMNESMKD--SMWMLTST 236
Cdd:PRK08601  194 NLAQLGTWEKTGINLLLILAVMIPAAQWPFQRWLIESAVAPTPVSAIMHAG-LVNAGGIMLTRFSPLFHDdiAQILLLIF 272

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2091982097 237 TSITLMLASMAANMETDLKKIIAFSTMSQISIIMMMISMNMKTSGMMHMINHAMFKTLLFMTAGS 301
Cdd:PRK08601  273 ASISVLIGTGISLVQVDYKRQLVGSTMAQMGFMLVQCALGAYSAAIIHLILHGLFKATLFLQSGS 337
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 186-305 1.47e-04

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 44.43  E-value: 1.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 186 VPLSAWLPAAMSAPTPISAMVHSSTLVTAGIYIILKMN-ESMKDSMW---MLTSTTSITLMLASMAANMETDLKKIIAFS 261
Cdd:PRK08042  197 IPLHGWVPQAHANASAPAAALFSTVVMKIGLLGILTLSlLGGNAPLWwgvALLVLGMITAFVGGLYALMEHNIQRLLAYH 276

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2091982097 262 T--------------MSQISIIMMMISMNMKTSGMMHMINHAMFKTLLFMTAGSTFLK 305
Cdd:PRK08042  277 TlenigiillglgagVTGIALEQPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFR 334
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 55-355 3.80e-04

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 43.24  E-value: 3.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  55 SMVTCSVLPFSTMYMESYNKKKKFFLIMMMF-LSSMMILITSESLISTVTGWDMLGVTSIALIMMYQNQKTMMNSmltmf 133
Cdd:PRK06459   50 SIISTIVWILASLYSIEYDHYGKWLSSLYILtILGMAIVLTSDNYLLFLAGWEIMTIPSYVAIALTKKNKRPAFV----- 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 134 fnrigdFLMF--FSIMMFMNNMEEKFCNILSMN-SKSLTNLS-IALMLTSMTKSAQVP--LSAWLPAAMS-APTPISAmV 206
Cdd:PRK06459  125 ------FMAFgeLSTVLILAGFAWAFIISGTTNfSYLPSPVPlILASFGFIIKMGMMPflVSEWLPIAHGnAPSNFSA-I 197

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 207 HSSTLVTAGIYIILKMNESMKDSMWMLTSTT-----SITLMLASMAANMETDLKKIIAFSTMSQISIIMMMISMNMKTSG 281
Cdd:PRK06459  198 LSATMTLMGVYGILKMTILTQTIPIGYFGLTilaigAFSILFGALYAYVSENVKGLLAFSTIENNGAILVALGLYMVTKQ 277

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 282 MMHMIN-------------HAMFKTLLFMTAGSTflkkwmeQDSRKTKSSKTMNKLYKSSLTSSIVSMSGIPFSCSFFSK 348
Cdd:PRK06459  278 LITSIEhfslitvilysfaHSVAKTGLFLSSGLQ-------EKQSITYSKKIRNRWIELGLTLLASSLSGLLPNIGGVAS 350


                  ....*..
gi 2091982097 349 DKFLEEM 355
Cdd:PRK06459  351 WLLLESL 357
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 71-348 5.53e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 42.41  E-value: 5.53e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097  71 SYNKKKKFFLIMMMFLSSMMILITSESLISTVTGWDMLGVTSIALIMMYQNQKTMMNSMLTMFFNRIGDFLMFFSIMMF- 149
Cdd:PRK12662  105 SVNKIPSFYSAFLLCLGGLLGILVSNDVFNIYVFLEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGIGFLy 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 150 -------MNNMEEKFCNILSMNSKSLTNLSIALMLTsmTKSAQVPLSAWLPAAMSAPTPISAMVHSSTLVTAGIYIILKM 222
Cdd:PRK12662  185 aitgtlnMGDMFLIIQDLPTNRAIQIGVLFIMVGLF--IKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRI 262

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 223 NESMKDSMWMLT---------STTSITLMLASMAANMETDLKKIIAFSTMSQISIIMMMISMNMKT---SGMMHMINHAM 290
Cdd:PRK12662  263 VYDVFKANFVFTtlpfnnvfmILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYglaAAVAYIVNHSI 342

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2091982097 291 FKTLLFMTAGSTFLKKWMEQDSRKTKSSKTMNKLyKSSLTSSIVSMSGIPFSCSFFSK 348
Cdd:PRK12662  343 VKSALFMVSGSISYHFGTTKLEDCLNLWKSMPKI-TLAFVLLSLSLIGMPPTSGFVAK 399
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 182-260 5.98e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 42.65  E-value: 5.98e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 182 KSAQVPLSAWLPAAM-SAPTPISAmVHSSTLVTAGIYIILKMNESM--KDSMW-MLTSTTSITLMLASMAANMETDLKKI 257
Cdd:PRK12665  222 KAAVFPLSFWLPDSYpTAPAPVTA-VFAGLLTKVGVYAIIRTHTLLfpGGGLDtLLMVVALLTMVVGILGAIAQSDIKRL 300


                  ...
gi 2091982097 258 IAF 260
Cdd:PRK12665  301 LSF 303
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 182-300 9.33e-04

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 41.61  E-value: 9.33e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 182 KSAQVPLSAWLP-AAMSAPTPISaMVHSSTLVTAGIYIILKMN-----ESMKDSMWMLTSTTSITLMLASMAANMETDLK 255
Cdd:COG1008   222 KVPMFPFHTWLPdAHVEAPTAGS-VLLAGVLLKMGGYGLLRFAlplfpEASAYFAPLLAALGVIGIIYGALVALAQTDLK 300

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 2091982097 256 KIIAFSTMSQISIIMMMISMNMKTS---GMMHMINHAMFKTLLFMTAG 300
Cdd:COG1008   301 RLIAYSSVSHMGFVLLGIFALNPLGlqgAVLQMVSHGLITAALFLLVG 348
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
186-305 5.75e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 39.30  E-value: 5.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 186 VPLSAWLP-AAMSAPTPISAMVhSSTLVTAGIYIILKMNESMKDSMWM-----LTSTTSITLMLASMAANMETDLKKIIA 259
Cdd:PRK06473  222 VPFHTWLPdAHVEASTPVSVLL-AGVLLKLGTYGLLRFGVGLFPEAWVylapwLATWAVVSVLYGASCAIAQKDMKKMVA 300

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 2091982097 260 FSTMSQISIIMMMISMNMKTS---GMMHMINHAMFKTLLFMTAGSTFLK 305
Cdd:PRK06473  301 YSSIGHMGYILLAAAAATPLSilaAVFQMISHGLISALLFLLVGVVYKK 349
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 150-415 9.47e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 38.78  E-value: 9.47e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 150 MNNMEEKFCNILSMNSKSLTNLSIALMLTSMTKSAQVPLSAWLPAAMSAP-TPISAMVhSSTLVTAGIYIILKM-----N 223
Cdd:PRK07691  190 MADISVKIAELSAGQTGLITVVAILFLFVFATKAGLFPLYFWLPGSYYAPpIAIAALF-GALLTKVGVYAIARTftlffS 268

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 224 ESMKDSMWMLTSTTSITLMLASMAANMETDLKKIIAFSTMSQISIIMMMISMNMKTS---GMMHMINHAMFKTLLFMTAG 300
Cdd:PRK07691  269 HDTSFTHYLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGmigAIYYLIHDMIVKAALFLLIG 348

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2091982097 301 STFlkkwmeqDSRKTKSSKTMNKLYKS------SLTSSIVSMSGIPFSCSFFSKdKFLEEMKWENKNSAMSFIMAASSLA 374
Cdd:PRK07691  349 IMI-------KITGTTDLKKMGGLIKRypvlgwMFFIAALSLAGIPPLSGFYGK-FFIVEGTFEAGFYVSGIIVLLSSLL 420

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 2091982097 375 TVKKNKKIL------QSMKNDKMNSASIKKMSIqPFSIMSMVTITIG 415
Cdd:PRK07691  421 VLYSVIKIFlkgfwgEPKGYDLNNKVPVKKLLL-PAVVLVAITILYG 466
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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