NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2250122956|gb|KAI4474101|]
View 

hypothetical protein M0804_015018 [Polistes exclamans]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
TAF4 super family cl47922
Transcription initiation factor TFIID component TAF4 family; This region of similarity is ...
 1-44 8.33e-14

Transcription initiation factor TFIID component TAF4 family; This region of similarity is found in Transcription initiation factor TFIID component TAF4.


The actual alignment was detected with superfamily member pfam05236:

Pssm-ID: 461598 [Multi-domain]  Cd Length: 264  Bit Score: 65.37  E-value: 8.33e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 2250122956   1 MQRAEMEELRQREANLTALQAIGPRKKPKLDIGGPANSPGNNSN 44
Cdd:pfam05236 163 MQKEEDEKMRHRAANLTALAAIGPRKKKYSWMSSSASGSGGGGS 206
 
Name Accession Description Interval E-value
TAF4 pfam05236
Transcription initiation factor TFIID component TAF4 family; This region of similarity is ...
 1-44 8.33e-14

Transcription initiation factor TFIID component TAF4 family; This region of similarity is found in Transcription initiation factor TFIID component TAF4.


Pssm-ID: 461598 [Multi-domain]  Cd Length: 264  Bit Score: 65.37  E-value: 8.33e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 2250122956   1 MQRAEMEELRQREANLTALQAIGPRKKPKLDIGGPANSPGNNSN 44
Cdd:pfam05236 163 MQKEEDEKMRHRAANLTALAAIGPRKKKYSWMSSSASGSGGGGS 206
 
Name Accession Description Interval E-value
TAF4 pfam05236
Transcription initiation factor TFIID component TAF4 family; This region of similarity is ...
 1-44 8.33e-14

Transcription initiation factor TFIID component TAF4 family; This region of similarity is found in Transcription initiation factor TFIID component TAF4.


Pssm-ID: 461598 [Multi-domain]  Cd Length: 264  Bit Score: 65.37  E-value: 8.33e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 2250122956   1 MQRAEMEELRQREANLTALQAIGPRKKPKLDIGGPANSPGNNSN 44
Cdd:pfam05236 163 MQKEEDEKMRHRAANLTALAAIGPRKKKYSWMSSSASGSGGGGS 206
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH