hypothetical protein N7473_013105 [Penicillium subrubescens]
Protein Classification
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| transpos_IS630 super family | cl41314 | IS630 family transposase; |
23-61 | 6.13e-06 | ||
IS630 family transposase; The actual alignment was detected with superfamily member NF033545: Pssm-ID: 468076 [Multi-domain] Cd Length: 298 Bit Score: 41.09 E-value: 6.13e-06
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| Name | Accession | Description | Interval | E-value | ||
| transpos_IS630 | NF033545 | IS630 family transposase; |
23-61 | 6.13e-06 | ||
IS630 family transposase; Pssm-ID: 468076 [Multi-domain] Cd Length: 298 Bit Score: 41.09 E-value: 6.13e-06
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| Csa3 | COG3415 | CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein ... |
22-61 | 9.19e-06 | ||
CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein Csa3, CARF domain is part of the Pathway/BioSystem: CRISPR-Cas system Pssm-ID: 442641 [Multi-domain] Cd Length: 325 Bit Score: 40.61 E-value: 9.19e-06
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| HTH_Hin_like | cd00569 | Helix-turn-helix domain of Hin and related proteins; This domain model summarizes a family of ... |
16-55 | 1.13e-04 | ||
Helix-turn-helix domain of Hin and related proteins; This domain model summarizes a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a C-terminal DNA-binding domain (HTH_Hin) and a catalytic domain. Pssm-ID: 259851 [Multi-domain] Cd Length: 42 Bit Score: 34.99 E-value: 1.13e-04
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| HTH_23 | pfam13384 | Homeodomain-like domain; |
19-61 | 2.41e-04 | ||
Homeodomain-like domain; Pssm-ID: 433164 [Multi-domain] Cd Length: 50 Bit Score: 34.55 E-value: 2.41e-04
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| Name | Accession | Description | Interval | E-value | ||
| transpos_IS630 | NF033545 | IS630 family transposase; |
23-61 | 6.13e-06 | ||
IS630 family transposase; Pssm-ID: 468076 [Multi-domain] Cd Length: 298 Bit Score: 41.09 E-value: 6.13e-06
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| Csa3 | COG3415 | CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein ... |
22-61 | 9.19e-06 | ||
CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein Csa3, CARF domain is part of the Pathway/BioSystem: CRISPR-Cas system Pssm-ID: 442641 [Multi-domain] Cd Length: 325 Bit Score: 40.61 E-value: 9.19e-06
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| HTH_Hin_like | cd00569 | Helix-turn-helix domain of Hin and related proteins; This domain model summarizes a family of ... |
16-55 | 1.13e-04 | ||
Helix-turn-helix domain of Hin and related proteins; This domain model summarizes a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a C-terminal DNA-binding domain (HTH_Hin) and a catalytic domain. Pssm-ID: 259851 [Multi-domain] Cd Length: 42 Bit Score: 34.99 E-value: 1.13e-04
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| HTH_23 | pfam13384 | Homeodomain-like domain; |
19-61 | 2.41e-04 | ||
Homeodomain-like domain; Pssm-ID: 433164 [Multi-domain] Cd Length: 50 Bit Score: 34.55 E-value: 2.41e-04
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| Tra8 | COG2826 | Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons]; |
19-57 | 5.47e-04 | ||
Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons]; Pssm-ID: 442074 [Multi-domain] Cd Length: 325 Bit Score: 35.63 E-value: 5.47e-04
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| HTH_29 | pfam13551 | Winged helix-turn helix; This helix-turn-helix domain is often found in transferases and is ... |
26-61 | 1.03e-03 | ||
Winged helix-turn helix; This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding. Pssm-ID: 433301 [Multi-domain] Cd Length: 64 Bit Score: 33.11 E-value: 1.03e-03
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| HTH_28 | pfam13518 | Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is ... |
23-61 | 5.92e-03 | ||
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding. Pssm-ID: 463908 [Multi-domain] Cd Length: 52 Bit Score: 31.02 E-value: 5.92e-03
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| Blast search parameters | ||||
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