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Conserved domains on  [gi|2509134731|gb|KAJ9432085|]
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nicotinamide-nucleotide amidase [Pantoea sp. YR343]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK03657 super family cl00666
2-oxo-tetronate isomerase;
1-164 2.04e-91

2-oxo-tetronate isomerase;


The actual alignment was detected with superfamily member PRK03661:

Pssm-ID: 469868  Cd Length: 164  Bit Score: 263.03  E-value: 2.04e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2509134731   1 MNDEQLQQLSRRIGEQLKKRQATVTAAESCTGGWIAKVFTDISGSSAWFERGFVTYSNEAKQQMVGVQDTTLQQYGAVSE 80
Cdd:PRK03661    1 MTDSELMQLSEQVGQALKARGATVTTAESCTGGWVAKVITDIAGSSAWFERGFVTYSNEAKAQMIGVREETLAQHGAVSE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2509134731  81 QTVREMATGAAKAAAAEYAIAVSGIAGPDGGTPDKPVGTVWFAIAGPEGRVLAQRQIFAGDRDAVRRQSVVWALQTLLDE 160
Cdd:PRK03661   81 PVVVEMAIGALKAARADYAVSISGIAGPDGGSEEKPVGTVWFGFASASGEGITRRECFSGDRDAVRRQATAYALQTLWQQ 160

                  ....
gi 2509134731 161 FLIN 164
Cdd:PRK03661  161 FLQN 164
 
Name Accession Description Interval E-value
PRK03661 PRK03661
nicotinamide-nucleotide amidase;
1-164 2.04e-91

nicotinamide-nucleotide amidase;


Pssm-ID: 179627  Cd Length: 164  Bit Score: 263.03  E-value: 2.04e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2509134731   1 MNDEQLQQLSRRIGEQLKKRQATVTAAESCTGGWIAKVFTDISGSSAWFERGFVTYSNEAKQQMVGVQDTTLQQYGAVSE 80
Cdd:PRK03661    1 MTDSELMQLSEQVGQALKARGATVTTAESCTGGWVAKVITDIAGSSAWFERGFVTYSNEAKAQMIGVREETLAQHGAVSE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2509134731  81 QTVREMATGAAKAAAAEYAIAVSGIAGPDGGTPDKPVGTVWFAIAGPEGRVLAQRQIFAGDRDAVRRQSVVWALQTLLDE 160
Cdd:PRK03661   81 PVVVEMAIGALKAARADYAVSISGIAGPDGGSEEKPVGTVWFGFASASGEGITRRECFSGDRDAVRRQATAYALQTLWQQ 160

                  ....
gi 2509134731 161 FLIN 164
Cdd:PRK03661  161 FLQN 164
PncC COG1546
Nicotinamide mononucleotide (NMN) deamidase PncC [Coenzyme transport and metabolism]; ...
6-160 1.04e-70

Nicotinamide mononucleotide (NMN) deamidase PncC [Coenzyme transport and metabolism]; Nicotinamide mononucleotide (NMN) deamidase PncC is part of the Pathway/BioSystem: NAD biosynthesis


Pssm-ID: 441155  Cd Length: 154  Bit Score: 209.90  E-value: 1.04e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2509134731   6 LQQLSRRIGEQLKKRQATVTAAESCTGGWIAKVFTDISGSSAWFERGFVTYSNEAKQQMVGVQDTTLQQYGAVSEQTVRE 85
Cdd:COG1546     1 LESLAEVVGELLRERGLTLATAESCTGGLIAAALTDVPGSSAVFDGGFVTYSNEAKEELLGVPAETLEKHGAVSEEVARE 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2509134731  86 MATGAAKAAAAEYAIAVSGIAGPDGGTPDKPVGTVWFAIAGPEGrVLAQRQIFAGDRDAVRRQSVVWALQTLLDE 160
Cdd:COG1546    81 MAEGARRLSGADIAVAVTGIAGPGGGTPGKPVGTVYIALAGPGG-VVVRRLHFGGDREAVREQAVRAALDLLREL 154
CinA pfam02464
Competence-damaged protein; CinA is the first gene in the competence-inducible (cin) operon, ...
6-161 6.09e-63

Competence-damaged protein; CinA is the first gene in the competence-inducible (cin) operon, and is thought to be specifically required at some stage in the process of transformation. This Pfam family consists of putative competence-damaged proteins from the cin operon. Some members of this family have nicotinamide mononucleotide (NMN) deamidase activity.


Pssm-ID: 460565  Cd Length: 155  Bit Score: 190.44  E-value: 6.09e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2509134731   6 LQQLSRRIGEQLKKRQATVTAAESCTGGWIAKVFTDISGSSAWFERGFVTYSNEAKQQMVGVQDTTLQQYGAVSEQTVRE 85
Cdd:pfam02464   1 LESLAEEVGKLLKARGLTLATAESCTGGLLAAALTSVPGASDVFLGGVVTYSNEAKRELLGVPPETLEEHGAVSEEVARE 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2509134731  86 MATGAAKAAAAEYAIAVSGIAGPDGGTPDKPVGTVWFAIAGPEGrVLAQRQIFAGDRDAVRRQSVVWALQTLLDEF 161
Cdd:pfam02464  81 MAEGARKRLGADIGVAITGIAGPSGGTEGKPVGTVYIAIAGPGG-TVTRRLNFGGDREAIREQAVVAALELLRRLL 155
PncC_domain TIGR00199
amidohydrolase, PncC family; CinA is a DNA damage- or competence-inducible protein that is ...
13-158 1.19e-60

amidohydrolase, PncC family; CinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species. Several bacterial species have a protein consisting largely of the C-terminal domain of CinA but lacking the N-terminal domain, including nicotinamide mononucleotide (NMN) deamidase (3.5.1.42) proteins PncC in Shewanella oneidensis and ygaD in E. coli. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129303 [Multi-domain]  Cd Length: 146  Bit Score: 184.53  E-value: 1.19e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2509134731  13 IGEQLKKRQATVTAAESCTGGWIAKVFTDISGSSAWFERGFVTYSNEAKQQMVGVQDTTLQQYGAVSEQTVREMATGAAK 92
Cdd:TIGR00199   1 LSERLKALGLTVATAESCTGGLLAHALTDISGASKYFGGGVVCYTNQVKINLLGVSQETLARFGAVSEECAAEMALGVKE 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2509134731  93 AAAAEYAIAVSGIAGPDGGTPDKPVGTVWFAIAGPEGRVLAQRQIFAGDRDAVRRQSVVWALQTLL 158
Cdd:TIGR00199  81 RFGADVGIAISGIAGPDGGEEEKPGGTVWFIWIIAKGQAYTAEMHFAGDRETIRALAVRYALHQLL 146
 
Name Accession Description Interval E-value
PRK03661 PRK03661
nicotinamide-nucleotide amidase;
1-164 2.04e-91

nicotinamide-nucleotide amidase;


Pssm-ID: 179627  Cd Length: 164  Bit Score: 263.03  E-value: 2.04e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2509134731   1 MNDEQLQQLSRRIGEQLKKRQATVTAAESCTGGWIAKVFTDISGSSAWFERGFVTYSNEAKQQMVGVQDTTLQQYGAVSE 80
Cdd:PRK03661    1 MTDSELMQLSEQVGQALKARGATVTTAESCTGGWVAKVITDIAGSSAWFERGFVTYSNEAKAQMIGVREETLAQHGAVSE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2509134731  81 QTVREMATGAAKAAAAEYAIAVSGIAGPDGGTPDKPVGTVWFAIAGPEGRVLAQRQIFAGDRDAVRRQSVVWALQTLLDE 160
Cdd:PRK03661   81 PVVVEMAIGALKAARADYAVSISGIAGPDGGSEEKPVGTVWFGFASASGEGITRRECFSGDRDAVRRQATAYALQTLWQQ 160

                  ....
gi 2509134731 161 FLIN 164
Cdd:PRK03661  161 FLQN 164
PncC COG1546
Nicotinamide mononucleotide (NMN) deamidase PncC [Coenzyme transport and metabolism]; ...
6-160 1.04e-70

Nicotinamide mononucleotide (NMN) deamidase PncC [Coenzyme transport and metabolism]; Nicotinamide mononucleotide (NMN) deamidase PncC is part of the Pathway/BioSystem: NAD biosynthesis


Pssm-ID: 441155  Cd Length: 154  Bit Score: 209.90  E-value: 1.04e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2509134731   6 LQQLSRRIGEQLKKRQATVTAAESCTGGWIAKVFTDISGSSAWFERGFVTYSNEAKQQMVGVQDTTLQQYGAVSEQTVRE 85
Cdd:COG1546     1 LESLAEVVGELLRERGLTLATAESCTGGLIAAALTDVPGSSAVFDGGFVTYSNEAKEELLGVPAETLEKHGAVSEEVARE 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2509134731  86 MATGAAKAAAAEYAIAVSGIAGPDGGTPDKPVGTVWFAIAGPEGrVLAQRQIFAGDRDAVRRQSVVWALQTLLDE 160
Cdd:COG1546    81 MAEGARRLSGADIAVAVTGIAGPGGGTPGKPVGTVYIALAGPGG-VVVRRLHFGGDREAVREQAVRAALDLLREL 154
CinA pfam02464
Competence-damaged protein; CinA is the first gene in the competence-inducible (cin) operon, ...
6-161 6.09e-63

Competence-damaged protein; CinA is the first gene in the competence-inducible (cin) operon, and is thought to be specifically required at some stage in the process of transformation. This Pfam family consists of putative competence-damaged proteins from the cin operon. Some members of this family have nicotinamide mononucleotide (NMN) deamidase activity.


Pssm-ID: 460565  Cd Length: 155  Bit Score: 190.44  E-value: 6.09e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2509134731   6 LQQLSRRIGEQLKKRQATVTAAESCTGGWIAKVFTDISGSSAWFERGFVTYSNEAKQQMVGVQDTTLQQYGAVSEQTVRE 85
Cdd:pfam02464   1 LESLAEEVGKLLKARGLTLATAESCTGGLLAAALTSVPGASDVFLGGVVTYSNEAKRELLGVPPETLEEHGAVSEEVARE 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2509134731  86 MATGAAKAAAAEYAIAVSGIAGPDGGTPDKPVGTVWFAIAGPEGrVLAQRQIFAGDRDAVRRQSVVWALQTLLDEF 161
Cdd:pfam02464  81 MAEGARKRLGADIGVAITGIAGPSGGTEGKPVGTVYIAIAGPGG-TVTRRLNFGGDREAIREQAVVAALELLRRLL 155
PncC_domain TIGR00199
amidohydrolase, PncC family; CinA is a DNA damage- or competence-inducible protein that is ...
13-158 1.19e-60

amidohydrolase, PncC family; CinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species. Several bacterial species have a protein consisting largely of the C-terminal domain of CinA but lacking the N-terminal domain, including nicotinamide mononucleotide (NMN) deamidase (3.5.1.42) proteins PncC in Shewanella oneidensis and ygaD in E. coli. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129303 [Multi-domain]  Cd Length: 146  Bit Score: 184.53  E-value: 1.19e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2509134731  13 IGEQLKKRQATVTAAESCTGGWIAKVFTDISGSSAWFERGFVTYSNEAKQQMVGVQDTTLQQYGAVSEQTVREMATGAAK 92
Cdd:TIGR00199   1 LSERLKALGLTVATAESCTGGLLAHALTDISGASKYFGGGVVCYTNQVKINLLGVSQETLARFGAVSEECAAEMALGVKE 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2509134731  93 AAAAEYAIAVSGIAGPDGGTPDKPVGTVWFAIAGPEGRVLAQRQIFAGDRDAVRRQSVVWALQTLL 158
Cdd:TIGR00199  81 RFGADVGIAISGIAGPDGGEEEKPGGTVWFIWIIAKGQAYTAEMHFAGDRETIRALAVRYALHQLL 146
PRK00549 PRK00549
competence damage-inducible protein A; Provisional
2-164 1.79e-53

competence damage-inducible protein A; Provisional


Pssm-ID: 234789 [Multi-domain]  Cd Length: 414  Bit Score: 174.21  E-value: 1.79e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2509134731   2 NDEQLQQLsrrIGEQLKKRQATVTAAESCTGGWIAKVFTDISGSSAWFERGFVTYSNEAKQQMVGVQDTTLQQYGAVSEQ 81
Cdd:PRK00549  255 DEDSLEEV---VAKLLKEKGLTIATAESCTGGLLAARLTDFPGSSSYFKGGVVTYSNEAKAKLLGVPPETLEEHGAVSEE 331
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2509134731  82 TVREMATGAAKAAAAEYAIAVSGIAGPDGGTPDKPVGTVWFAIAGPEGRVLAQRQIFAGDRDAVRRQSVVWALQtLLDEF 161
Cdd:PRK00549  332 TAEEMAEGARKLLGADIGISITGVAGPDGGTEEKPVGTVYIGLATPGGETVVKELILGGSRSDIRERAVTYALD-LLRRA 410

                  ...
gi 2509134731 162 LIN 164
Cdd:PRK00549  411 LLG 413
PRK03657 PRK03657
2-oxo-tetronate isomerase;
4-162 6.64e-33

2-oxo-tetronate isomerase;


Pssm-ID: 235149  Cd Length: 170  Bit Score: 114.60  E-value: 6.64e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2509134731   4 EQLQQLSRRIGEQLKKRQATVTAAESCTGGWIAKVFTDISGSSAWFERGFVTYSNEAKQQMVGVQDTTLQQYGAVSEQTV 83
Cdd:PRK03657   10 DTIENLTKALSQRLIADQLRLTTAESCTGGKLASALCAAEDTPKFYGAGFVTFTDEAKMKILSVSQQSLERYSAVSEAVV 89
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2509134731  84 REMATGAAKAAAAEYAIAVSGIAGPDGGTPDKPVGTVWFAiAGPEGRVLAQRQIFAGDRDAVRRQSVVWALQTLLDEFL 162
Cdd:PRK03657   90 AEMATGAIERADADISIAISGYGGPEGGEDGTPAGTVWFA-WNIKGQTYTARMHFAGDCETVLAKAVRFALAQLLQLLL 167
cinA_nterm TIGR00200
competence/damage-inducible protein CinA N-terminal domain; cinA is a DNA damage- or ...
9-158 3.00e-21

competence/damage-inducible protein CinA N-terminal domain; cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 161761 [Multi-domain]  Cd Length: 413  Bit Score: 88.81  E-value: 3.00e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2509134731   9 LSRRIGEQLKKRQATVTAAESCTGGWIAKVFTDISGSSAWFERGFVTYSNEAKQQMVGVQDTTLQQYGAVSEQTVREMAT 88
Cdd:TIGR00200 260 LPAQISRELQERGFTLTLAESFTGGLLALQLTDHSGASKLFAGGVPLYANEVKPSQLGVLAETAHWIGAVSANHAAGLAL 339
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2509134731  89 GAAKAAAAEYAIAVSGIAGPDgGTPDKPVGTVWFAIAGPeGRVLAQRQIFAGDRDAVRRQSVVWALQTLL 158
Cdd:TIGR00200 340 GVSGFEGEDLGIALTGPAGPD-FAERVRFGTVRYGLAIR-QEVAMHALNMLGRRLGIRDIAAEHGWIEVV 407
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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