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Conserved domains on  [gi|2509134743|gb|KAJ9432097|]
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30S ribosomal protein S16 [Pantoea sp. YR343]

Protein Classification

30S ribosomal protein S16( domain architecture ID 10000742)

30S ribosomal protein S16 is a ribosomal protein that may have a cation-dependent endonuclease activity

Gene Ontology:  GO:0003735|GO:0006412
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 1-78 1.02e-43

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


:

Pssm-ID: 439998  Cd Length: 76  Bit Score: 135.56  E-value: 1.02e-43
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2509134743  1 MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIAsgQAEGLRLDLDRIEHWVGQGATLSDRVNALIKEA 78
Cdd:COG0228    1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERIGFYNPLT--NPARIKLDEERAQYWLSKGAQPTDTVAKLLKKA 76
 
Name Accession Description Interval E-value
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 1-78 1.02e-43

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439998  Cd Length: 76  Bit Score: 135.56  E-value: 1.02e-43
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2509134743  1 MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIAsgQAEGLRLDLDRIEHWVGQGATLSDRVNALIKEA 78
Cdd:COG0228    1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERIGFYNPLT--NPARIKLDEERAQYWLSKGAQPTDTVAKLLKKA 76
Ribosomal_S16 pfam00886
Ribosomal protein S16;
8-68 8.42e-33

Ribosomal protein S16;


Pssm-ID: 459981  Cd Length: 61  Bit Score: 107.46  E-value: 8.42e-33
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2509134743  8 RHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASGQAEGLRLDLDRIEHWVGQGATLS 68
Cdd:pfam00886  1 RMGRKKRPFYRIVVADSRSPRDGRFIEELGTYNPLAEPGEPRVKLDEERIKYWLGVGAQPT 61
S16 TIGR00002
ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein ...
 2-79 1.86e-31

ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272848  Cd Length: 78  Bit Score: 104.63  E-value: 1.86e-31
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2509134743  2 VTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASGqaEGLRLDLDRIEHWVGQGATLSDRVNALIKEAK 79
Cdd:TIGR00002  1 VKIRLKRGGRKKRPFYRIVVADSRSRRDGRYIEELGFYNPITKE--DLVKLNVERIKHWLSKGAQPTDTVRKLLKKAG 76
rpsP PRK14521
30S ribosomal protein S16; Provisional
 2-77 1.96e-18

30S ribosomal protein S16; Provisional


Pssm-ID: 237744 [Multi-domain]  Cd Length: 186  Bit Score: 74.81  E-value: 1.96e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2509134743   2 VTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPiaSGQAEGLRLDLDRIEHWVGQGATLSDRVNALIKE 77
Cdd:PRK14521    3 VKIRLQRHGRKGKAFYWIVAADSRAPRDGKFIEKIGTYNP--NTNPATVDLNFDRAVYWLMNGAQPTDTARNILSY 76
 
Name Accession Description Interval E-value
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 1-78 1.02e-43

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439998  Cd Length: 76  Bit Score: 135.56  E-value: 1.02e-43
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2509134743  1 MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIAsgQAEGLRLDLDRIEHWVGQGATLSDRVNALIKEA 78
Cdd:COG0228    1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERIGFYNPLT--NPARIKLDEERAQYWLSKGAQPTDTVAKLLKKA 76
Ribosomal_S16 pfam00886
Ribosomal protein S16;
8-68 8.42e-33

Ribosomal protein S16;


Pssm-ID: 459981  Cd Length: 61  Bit Score: 107.46  E-value: 8.42e-33
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2509134743  8 RHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASGQAEGLRLDLDRIEHWVGQGATLS 68
Cdd:pfam00886  1 RMGRKKRPFYRIVVADSRSPRDGRFIEELGTYNPLAEPGEPRVKLDEERIKYWLGVGAQPT 61
S16 TIGR00002
ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein ...
 2-79 1.86e-31

ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272848  Cd Length: 78  Bit Score: 104.63  E-value: 1.86e-31
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2509134743  2 VTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASGqaEGLRLDLDRIEHWVGQGATLSDRVNALIKEAK 79
Cdd:TIGR00002  1 VKIRLKRGGRKKRPFYRIVVADSRSRRDGRYIEELGFYNPITKE--DLVKLNVERIKHWLSKGAQPTDTVRKLLKKAG 76
rpsP PRK14521
30S ribosomal protein S16; Provisional
 2-77 1.96e-18

30S ribosomal protein S16; Provisional


Pssm-ID: 237744 [Multi-domain]  Cd Length: 186  Bit Score: 74.81  E-value: 1.96e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2509134743   2 VTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPiaSGQAEGLRLDLDRIEHWVGQGATLSDRVNALIKE 77
Cdd:PRK14521    3 VKIRLQRHGRKGKAFYWIVAADSRAPRDGKFIEKIGTYNP--NTNPATVDLNFDRAVYWLMNGAQPTDTARNILSY 76
rps16 CHL00005
ribosomal protein S16
 1-79 1.83e-16

ribosomal protein S16


Pssm-ID: 176950  Cd Length: 82  Bit Score: 66.97  E-value: 1.83e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2509134743  1 MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIaSGQAeglRLDLDRIEHWVGQGATLSDRVNALIKEAK 79
Cdd:CHL00005   1 MVKLRLKRCGRKQQAVYRIVAIDVRSRREGRDLEKVGFYDPI-KNQT---YLNVPAILYFLEKGAQPTETVYDILKKAE 75
rpsP PRK14520
30S ribosomal protein S16; Provisional
 2-76 4.02e-16

30S ribosomal protein S16; Provisional


Pssm-ID: 184724 [Multi-domain]  Cd Length: 155  Bit Score: 67.80  E-value: 4.02e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2509134743   2 VTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIAsgQAEGLRLDLDRIEHWVGQGATLSDRVNALIK 76
Cdd:PRK14520    3 VKIKLKRLGKIRNPQYRIVVADSRTKRDGRAIEEIGRYHPKE--EPSLIEIDSERAQYWLSVGAQPTEPVLALLK 75
rpsP PRK14522
30S ribosomal protein S16; Provisional
 4-77 7.12e-11

30S ribosomal protein S16; Provisional


Pssm-ID: 172988 [Multi-domain]  Cd Length: 116  Bit Score: 53.46  E-value: 7.12e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2509134743   4 IRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASgqaEGLRLDLDRIEHWVGQGATLSDRVNALIKE 77
Cdd:PRK14522    5 IRLRQQGRRNHVVYRLVLADVESPRDGKYIELLGWYDPHSE---QNYQLKSERIFYWLNQGAELTEKAGALVKQ 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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