|
Name |
Accession |
Description |
Interval |
E-value |
| HTH_ARAC |
smart00342 |
helix_turn_helix, arabinose operon control protein; |
135-218 |
3.74e-24 |
|
helix_turn_helix, arabinose operon control protein;
Pssm-ID: 197666 [Multi-domain] Cd Length: 84 Bit Score: 91.46 E-value: 3.74e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705091 135 PLTLREIADQVYLSRSYLSSIFKETMGENIKDFIYRERMRTAQNLLLSTDVGVQEISCRCGYQSFAYFSASFRRYCHMSP 214
Cdd:smart00342 1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTP 80
|
....
gi 667705091 215 TSFR 218
Cdd:smart00342 81 SEYR 84
|
|
| GlxA |
COG4977 |
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ... |
120-220 |
2.23e-21 |
|
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];
Pssm-ID: 444002 [Multi-domain] Cd Length: 318 Bit Score: 89.83 E-value: 2.23e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705091 120 AINTVINYIRENIDRPLTLREIADQVYLSRSYLSSIFKETMGENIKDFIYRERMRTAQNLLLSTDVGVQEISCRCGYQSF 199
Cdd:COG4977 211 RLARAQAWMEANLEEPLSVDELARRAGMSPRTLERRFRAATGTTPARYLQRLRLERARRLLETTDLSIEEIAAACGFGSA 290
|
90 100
....*....|....*....|.
gi 667705091 200 AYFSASFRRYCHMSPTSFRQR 220
Cdd:COG4977 291 SHFRRAFRRRFGVSPSAYRRR 311
|
|
| AraC |
COG2207 |
AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; |
6-221 |
2.34e-20 |
|
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
Pssm-ID: 441809 [Multi-domain] Cd Length: 258 Bit Score: 86.37 E-value: 2.34e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705091 6 TDVADERLYRFQEICQLTIRGREKEAYRKMVQQALFIKGGGEEVRLFRVFLNAMNQAHYHILLYTFEASFHQLCYRHGIL 85
Cdd:COG2207 35 VLLLLLLALLLLLLLLLGLLGGLLLLLLLLLLLGLLLLLLLLLLGLLLLALLALLLLVGLLLLLLLLLLLLLLLLLLLLL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705091 86 FHEVENWNEFLRVGKQIINNYAAAANSIHNRYKGAINTVINYIRENIDR----PLTLREIADQVYLSRSYLSSIFKETMG 161
Cdd:COG2207 115 LLLLLLLLLLLLLLALLRALELLLLLLLLLLLLLLLLLLLLLLLLLLLLllllLLTLEELARELGLSPRTLSRLFKEETG 194
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705091 162 ENIKDFIYRERMRTAQNLLLSTDVGVQEISCRCGYQSFAYFSASFRRYCHMSPTSFRQRA 221
Cdd:COG2207 195 TSPKQYLRELRLERAKRLLAETDLSISEIAYELGFSSQSHFSRAFKKRFGVTPSEYRKRL 254
|
|
| HTH_18 |
pfam12833 |
Helix-turn-helix domain; |
141-220 |
1.99e-18 |
|
Helix-turn-helix domain;
Pssm-ID: 432818 [Multi-domain] Cd Length: 81 Bit Score: 76.47 E-value: 1.99e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705091 141 IADQVYLSRSYLSSIFKETMGENIKDFIYRERMRTAQNLLL-STDVGVQEISCRCGYQSFAYFSASFRRYCHMSPTSFRQ 219
Cdd:pfam12833 1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLLeDTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYRR 80
|
.
gi 667705091 220 R 220
Cdd:pfam12833 81 R 81
|
|
| PRK10371 |
PRK10371 |
transcriptional regulator MelR; |
111-219 |
1.37e-14 |
|
transcriptional regulator MelR;
Pssm-ID: 182416 [Multi-domain] Cd Length: 302 Bit Score: 71.00 E-value: 1.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705091 111 NSIHNRYKGAINTVINYIRENIDRPLTLREIADQVYLSRSYLSSIFKETMGENIKDFIYRERMRTAQNLLLSTDVGVQEI 190
Cdd:PRK10371 183 NSVSRHAQFYVSQMLGFIAENYDQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYITAMRINHVRALLSDTDKSILDI 262
|
90 100
....*....|....*....|....*....
gi 667705091 191 SCRCGYQSFAYFSASFRRYCHMSPTSFRQ 219
Cdd:PRK10371 263 ALTAGFRSSSRFYSTFGKYVGMSPQQYRK 291
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| HTH_ARAC |
smart00342 |
helix_turn_helix, arabinose operon control protein; |
135-218 |
3.74e-24 |
|
helix_turn_helix, arabinose operon control protein;
Pssm-ID: 197666 [Multi-domain] Cd Length: 84 Bit Score: 91.46 E-value: 3.74e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705091 135 PLTLREIADQVYLSRSYLSSIFKETMGENIKDFIYRERMRTAQNLLLSTDVGVQEISCRCGYQSFAYFSASFRRYCHMSP 214
Cdd:smart00342 1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTP 80
|
....
gi 667705091 215 TSFR 218
Cdd:smart00342 81 SEYR 84
|
|
| GlxA |
COG4977 |
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ... |
120-220 |
2.23e-21 |
|
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];
Pssm-ID: 444002 [Multi-domain] Cd Length: 318 Bit Score: 89.83 E-value: 2.23e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705091 120 AINTVINYIRENIDRPLTLREIADQVYLSRSYLSSIFKETMGENIKDFIYRERMRTAQNLLLSTDVGVQEISCRCGYQSF 199
Cdd:COG4977 211 RLARAQAWMEANLEEPLSVDELARRAGMSPRTLERRFRAATGTTPARYLQRLRLERARRLLETTDLSIEEIAAACGFGSA 290
|
90 100
....*....|....*....|.
gi 667705091 200 AYFSASFRRYCHMSPTSFRQR 220
Cdd:COG4977 291 SHFRRAFRRRFGVSPSAYRRR 311
|
|
| AraC |
COG2207 |
AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; |
6-221 |
2.34e-20 |
|
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
Pssm-ID: 441809 [Multi-domain] Cd Length: 258 Bit Score: 86.37 E-value: 2.34e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705091 6 TDVADERLYRFQEICQLTIRGREKEAYRKMVQQALFIKGGGEEVRLFRVFLNAMNQAHYHILLYTFEASFHQLCYRHGIL 85
Cdd:COG2207 35 VLLLLLLALLLLLLLLLGLLGGLLLLLLLLLLLGLLLLLLLLLLGLLLLALLALLLLVGLLLLLLLLLLLLLLLLLLLLL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705091 86 FHEVENWNEFLRVGKQIINNYAAAANSIHNRYKGAINTVINYIRENIDR----PLTLREIADQVYLSRSYLSSIFKETMG 161
Cdd:COG2207 115 LLLLLLLLLLLLLLALLRALELLLLLLLLLLLLLLLLLLLLLLLLLLLLllllLLTLEELARELGLSPRTLSRLFKEETG 194
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705091 162 ENIKDFIYRERMRTAQNLLLSTDVGVQEISCRCGYQSFAYFSASFRRYCHMSPTSFRQRA 221
Cdd:COG2207 195 TSPKQYLRELRLERAKRLLAETDLSISEIAYELGFSSQSHFSRAFKKRFGVTPSEYRKRL 254
|
|
| HTH_18 |
pfam12833 |
Helix-turn-helix domain; |
141-220 |
1.99e-18 |
|
Helix-turn-helix domain;
Pssm-ID: 432818 [Multi-domain] Cd Length: 81 Bit Score: 76.47 E-value: 1.99e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705091 141 IADQVYLSRSYLSSIFKETMGENIKDFIYRERMRTAQNLLL-STDVGVQEISCRCGYQSFAYFSASFRRYCHMSPTSFRQ 219
Cdd:pfam12833 1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLLeDTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYRR 80
|
.
gi 667705091 220 R 220
Cdd:pfam12833 81 R 81
|
|
| PRK10371 |
PRK10371 |
transcriptional regulator MelR; |
111-219 |
1.37e-14 |
|
transcriptional regulator MelR;
Pssm-ID: 182416 [Multi-domain] Cd Length: 302 Bit Score: 71.00 E-value: 1.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705091 111 NSIHNRYKGAINTVINYIRENIDRPLTLREIADQVYLSRSYLSSIFKETMGENIKDFIYRERMRTAQNLLLSTDVGVQEI 190
Cdd:PRK10371 183 NSVSRHAQFYVSQMLGFIAENYDQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYITAMRINHVRALLSDTDKSILDI 262
|
90 100
....*....|....*....|....*....
gi 667705091 191 SCRCGYQSFAYFSASFRRYCHMSPTSFRQ 219
Cdd:PRK10371 263 ALTAGFRSSSRFYSTFGKYVGMSPQQYRK 291
|
|
| AdaA |
COG2169 |
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), ... |
120-222 |
7.10e-14 |
|
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains [Replication, recombination and repair];
Pssm-ID: 441772 [Multi-domain] Cd Length: 358 Bit Score: 69.31 E-value: 7.10e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705091 120 AINTVINYIRENIDRPLTLREIADQVYLSRSYLSSIFKETMGENIKDFIYRERMRTAQNLLlSTDVGVQEISCRCGYQSF 199
Cdd:COG2169 85 LVARACRLIEAGAEDRPSLEDLAARLGLSPRHLRRLFKAHTGVTPKAYARARRLLRARQLL-QTGLSVTDAAYAAGFGSL 163
|
90 100
....*....|....*....|...
gi 667705091 200 AYFSASFRRYCHMSPTSFRQRAV 222
Cdd:COG2169 164 SRFYEAFKKLLGMTPSAYRRGGA 186
|
|
| PRK10572 |
PRK10572 |
arabinose operon transcriptional regulator AraC; |
121-221 |
1.08e-13 |
|
arabinose operon transcriptional regulator AraC;
Pssm-ID: 236717 [Multi-domain] Cd Length: 290 Bit Score: 68.46 E-value: 1.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705091 121 INTVINYIRENIDRPLTLREIADQVYLSRSYLSSIFKETMGENIkdFIYRE--RMRTAQNLLLSTDVGVQEISCRCGYQS 198
Cdd:PRK10572 185 VREACQYISDHLASEFDIESVAQHVCLSPSRLAHLFRQQLGISV--LRWREdqRISRAKLLLQTTRMPIATIGRNVGYDD 262
|
90 100
....*....|....*....|...
gi 667705091 199 FAYFSASFRRYCHMSPTSFRQRA 221
Cdd:PRK10572 263 QLYFSRVFKKCTGASPSEFRARC 285
|
|
| PRK10219 |
PRK10219 |
superoxide response transcriptional regulator SoxS; |
121-221 |
3.12e-13 |
|
superoxide response transcriptional regulator SoxS;
Pssm-ID: 182314 [Multi-domain] Cd Length: 107 Bit Score: 63.79 E-value: 3.12e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705091 121 INTVINYIRENIDRPLTLREIADQVYLSRSYLSSIFKETMGENIKDFIYRERMRTAQNLLLSTDVGVQEISCRCGYQSFA 200
Cdd:PRK10219 7 IQTLIAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGDYIRQRRLLLAAVELRTTERPIFDIAMDLGYVSQQ 86
|
90 100
....*....|....*....|.
gi 667705091 201 YFSASFRRYCHMSPTSFRQRA 221
Cdd:PRK10219 87 TFSRVFRRQFDRTPSDYRHRL 107
|
|
| ftrA |
PRK09393 |
transcriptional activator FtrA; Provisional |
124-220 |
7.57e-13 |
|
transcriptional activator FtrA; Provisional
Pssm-ID: 181818 [Multi-domain] Cd Length: 322 Bit Score: 66.14 E-value: 7.57e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705091 124 VINYIRENIDRPLTLREIADQVYLS-RSYLSSiFKETMGENIKDFIYRERMRTAQNLLLSTDVGVQEISCRCGYQSFAYF 202
Cdd:PRK09393 223 LIDWMRAHLAEPHTVASLAARAAMSpRTFLRR-FEAATGMTPAEWLLRERLARARDLLESSALSIDQIAERAGFGSEESL 301
|
90
....*....|....*...
gi 667705091 203 SASFRRYCHMSPTSFRQR 220
Cdd:PRK09393 302 RHHFRRRAATSPAAYRKR 319
|
|
| PRK13501 |
PRK13501 |
HTH-type transcriptional activator RhaR; |
102-222 |
6.48e-11 |
|
HTH-type transcriptional activator RhaR;
Pssm-ID: 184092 [Multi-domain] Cd Length: 290 Bit Score: 60.69 E-value: 6.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705091 102 IINNYAAAANSIHNRYKG-AINTVINYIRENIDRPLTLREIADQVYLSRSYLSSIFKETMGENIKDFIYRERMRTAQNLL 180
Cdd:PRK13501 158 VLKRHRYRAEQAHLLPDGeQLDLIMSALQQSLGAYFDMADFCHKNQLVERSLKQLFRQQTGMSISHYLRQIRLCHAKCLL 237
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 667705091 181 LSTDVGVQEISCRCGYQSFAYFSASFRRYCHMSPTSFRQRAV 222
Cdd:PRK13501 238 RGSEHRISDIAARCGFEDSNYFSAVFTREAGMTPRDYRQRFI 279
|
|
| PRK09978 |
PRK09978 |
DNA-binding transcriptional regulator GadX; Provisional |
111-220 |
3.75e-09 |
|
DNA-binding transcriptional regulator GadX; Provisional
Pssm-ID: 137624 [Multi-domain] Cd Length: 274 Bit Score: 55.32 E-value: 3.75e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705091 111 NSIHNRYKGAINTVINyirENIDRPLTLREIADQVYLSRSYLSSIFKETmGENIKDFIYRERMRTAQNLLLSTDVGVQEI 190
Cdd:PRK09978 137 NVLQPNMRTRVCTVIN---NNIAHEWTLARIASELLMSPSLLKKKLREE-ETSYSQLLTECRMQRALQLIVIHGFSIKRV 212
|
90 100 110
....*....|....*....|....*....|
gi 667705091 191 SCRCGYQSFAYFSASFRRYCHMSPTSFRQR 220
Cdd:PRK09978 213 AVSCGYHSVSYFIYVFRNYYGMTPTEYQER 242
|
|
| PRK15185 |
PRK15185 |
transcriptional regulator HilD; Provisional |
124-221 |
8.67e-09 |
|
transcriptional regulator HilD; Provisional
Pssm-ID: 185107 [Multi-domain] Cd Length: 309 Bit Score: 54.62 E-value: 8.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705091 124 VINYIRENIDRPLTLREIADQVYLSRSYLSSIFKETmGENIKDFIYRERMRTAQNLLLSTDVGVQEISCRCGYQSFAYFS 203
Cdd:PRK15185 211 VYNIISSSPSRQWKLTDVADHIFMSTSTLKRKLAEE-GTSFSDIYLSARMNQAAKLLRIGNHNVNAVALKCGYDSTSYFI 289
|
90
....*....|....*...
gi 667705091 204 ASFRRYCHMSPTSFRQRA 221
Cdd:PRK15185 290 QCFKKYFKTTPSTFIKMA 307
|
|
| PRK13502 |
PRK13502 |
HTH-type transcriptional activator RhaR; |
121-219 |
2.60e-08 |
|
HTH-type transcriptional activator RhaR;
Pssm-ID: 184093 [Multi-domain] Cd Length: 282 Bit Score: 53.13 E-value: 2.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705091 121 INTVINYIRENIDRPLTLREIADQVYLSRSYLSSIFKETMGENIKDFIYRERMRTAQNLLLSTDVGVQEISCRCGYQSFA 200
Cdd:PRK13502 178 LDKLITALANSLECPFALDAFCQQEQCSERVLRQQFRAQTGMTINQYLRQVRICHAQYLLQHSPLMISEISMQCGFEDSN 257
|
90
....*....|....*....
gi 667705091 201 YFSASFRRYCHMSPTSFRQ 219
Cdd:PRK13502 258 YFSVVFTRETGMTPSQWRH 276
|
|
| PRK15186 |
PRK15186 |
AraC family transcriptional regulator; Provisional |
124-217 |
3.80e-08 |
|
AraC family transcriptional regulator; Provisional
Pssm-ID: 185108 [Multi-domain] Cd Length: 291 Bit Score: 52.38 E-value: 3.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705091 124 VINYIRENIDRPLTLREIADQVYLSRSYLSSIFKETmGENIKDFIYRERMRTAQNLLLSTDVGVQEISCRCGYQSFAYFS 203
Cdd:PRK15186 186 IYNIIISDISRKWALKDISDSLYMSCSTLKRKLKQE-NTSFSEVYLNARMNKATKLLRNSEYNITRVAYMCGYDSASYFT 264
|
90
....*....|....
gi 667705091 204 ASFRRYCHMSPTSF 217
Cdd:PRK15186 265 CVFKKHFKTTPSEF 278
|
|
| PRK13500 |
PRK13500 |
HTH-type transcriptional activator RhaR; |
121-219 |
1.35e-07 |
|
HTH-type transcriptional activator RhaR;
Pssm-ID: 184091 [Multi-domain] Cd Length: 312 Bit Score: 50.87 E-value: 1.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705091 121 INTVINYIRENIDRPLTLREIADQVYLSRSYLSSIFKETMGENIKDFIYRERMRTAQNLLLSTDVGVQEISCRCGYQSFA 200
Cdd:PRK13500 208 LDKLITRLAASLKSPFALDKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLLQHSRLLISDISTECGFEDSN 287
|
90
....*....|....*....
gi 667705091 201 YFSASFRRYCHMSPTSFRQ 219
Cdd:PRK13500 288 YFSVVFTRETGMTPSQWRH 306
|
|
| HTH_AraC |
pfam00165 |
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the ... |
128-168 |
1.71e-07 |
|
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the N-terminal arm of AraC binds to the DNA binding domain (pfam00165) and helps to hold the two DNA binding domains in a relative orientation that favours DNA looping. In the presence of arabinose, the arms bind over the arabinose on the dimerization domain, thus freeing the DNA-binding domains. The freed DNA-binding domains are then able to assume a conformation suitable for binding to the adjacent DNA sites that are utilized when AraC activates transcription, and hence AraC ceases looping the DNA when arabinose is added.
Pssm-ID: 425497 [Multi-domain] Cd Length: 42 Bit Score: 46.38 E-value: 1.71e-07
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 667705091 128 IRENIDRPLTLREIADQVYLSRSYLSSIFKETMGENIKDFI 168
Cdd:pfam00165 1 LRENLSTNLTIADIADELGFSRSYFSRLFKKYTGVTPSQYR 41
|
|
| PRK11511 |
PRK11511 |
MDR efflux pump AcrAB transcriptional activator MarA; |
121-218 |
5.35e-07 |
|
MDR efflux pump AcrAB transcriptional activator MarA;
Pssm-ID: 236920 [Multi-domain] Cd Length: 127 Bit Score: 47.40 E-value: 5.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705091 121 INTVINYIRENIDRPLTLREIADQVYLSRSYLSSIFKETMGENIKDFIYRERMRTAQNLLLSTDVGVQEISCRCGYQSFA 200
Cdd:PRK11511 11 IHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQ 90
|
90
....*....|....*...
gi 667705091 201 YFSASFRRYCHMSPTSFR 218
Cdd:PRK11511 91 TLTRTFKNYFDVPPHKYR 108
|
|
| PRK09940 |
PRK09940 |
transcriptional regulator YdeO; Provisional |
124-214 |
2.35e-05 |
|
transcriptional regulator YdeO; Provisional
Pssm-ID: 182157 [Multi-domain] Cd Length: 253 Bit Score: 43.92 E-value: 2.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705091 124 VINYIRENIDRPLTLREIADQVYLSRSYLSSIFKETMgENIKDFIYRERMRTAQNLLlSTDVGVQEISCRCGYQSFAYFS 203
Cdd:PRK09940 139 VRNIVNMKLAHPWKLKDICDCLYISESLLKKKLKQEQ-TTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFI 216
|
90
....*....|.
gi 667705091 204 ASFRRYCHMSP 214
Cdd:PRK09940 217 YAFRKHFGNSP 227
|
|
| PRK13503 |
PRK13503 |
HTH-type transcriptional activator RhaS; |
121-219 |
3.24e-05 |
|
HTH-type transcriptional activator RhaS;
Pssm-ID: 184094 [Multi-domain] Cd Length: 278 Bit Score: 43.90 E-value: 3.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705091 121 INTVINYIRENIDRPLTLREIADQVYLSRSYLSSIFKETMGENIKDFIYRERMRTAQNLLLSTDVGVQEISCRCGYQSFA 200
Cdd:PRK13503 173 LNQLLAWLEDHFAEEVNWEALADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLLKARHLLRHSDASVTDIAYRCGFGDSN 252
|
90
....*....|....*....
gi 667705091 201 YFSASFRRYCHMSPTSFRQ 219
Cdd:PRK13503 253 HFSTLFRREFSWSPRDIRQ 271
|
|
| PRK15044 |
PRK15044 |
transcriptional regulator SirC; Provisional |
124-217 |
4.10e-04 |
|
transcriptional regulator SirC; Provisional
Pssm-ID: 185004 [Multi-domain] Cd Length: 295 Bit Score: 40.40 E-value: 4.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705091 124 VINYIRENIDRPLTLREIADQVYLSrsyLSSIFKETMGENIK-DFIYRE-RMRTAQNLLLSTDVGVQEISCRCGYQSFAY 201
Cdd:PRK15044 197 VYNIIISDLTRKWSQAEVAGKLFMS---VSSLKRKLAAEEVSfSKIYLDaRMNQAIKLLRMGAGNISQVATMCGYDTPSY 273
|
90
....*....|....*.
gi 667705091 202 FSASFRRYCHMSPTSF 217
Cdd:PRK15044 274 FIAIFKRHFKITPLSF 289
|
|
| PRK09685 |
PRK09685 |
DNA-binding transcriptional activator FeaR; Provisional |
124-221 |
5.98e-03 |
|
DNA-binding transcriptional activator FeaR; Provisional
Pssm-ID: 236612 [Multi-domain] Cd Length: 302 Bit Score: 36.93 E-value: 5.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705091 124 VINYIRENIDRP-LTLREIADQVYLSRSYLSSIFKETmGENIKDFIYRER-MRTAQNLL-LSTDVGVQEISCRCGYQSFA 200
Cdd:PRK09685 202 VVALIDQSIQEEiLRPEWIAGELGISVRSLYRLFAEQ-GLVVAQYIRNRRlDRCADDLRpAADDEKITSIAYKWGFSDSS 280
|
90 100
....*....|....*....|.
gi 667705091 201 YFSASFRRYCHMSPTSFRQRA 221
Cdd:PRK09685 281 HFSTAFKQRFGVSPGEYRRKF 301
|
|
| PRK10130 |
PRK10130 |
HTH-type transcriptional regulator EutR; |
107-216 |
6.56e-03 |
|
HTH-type transcriptional regulator EutR;
Pssm-ID: 182258 [Multi-domain] Cd Length: 350 Bit Score: 36.82 E-value: 6.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705091 107 AAAANSI-HNRYKGAINTVINYIRENIDRPLTLREIADQVYLSRSYLSSIFKETMGENIKDFIYRERMRTAQNLLL---S 182
Cdd:PRK10130 227 MVTAESIsHQSYRRLLSRAREYVLENMSEPVTVLDLCNQLHVSRRTLQNAFHAILGIGPNAWLKRIRLNAVRRELIspwS 306
|
90 100 110
....*....|....*....|....*....|....
gi 667705091 183 TDVGVQEISCRCGYQSFAYFSASFRRYCHMSPTS 216
Cdd:PRK10130 307 QSTTVKDAAMQWGFWHLGQFATDYQQLFAEKPSL 340
|
|
|