|
Name |
Accession |
Description |
Interval |
E-value |
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
1-306 |
7.55e-96 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 285.81 E-value: 7.55e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 1 MKKYIFTKIMHGILLLLCISLLAFVTNFLAEGDPVEMYYiahnEPLPSPEILAQKRAEAGLNDPWLKQYSRWLGHFIEGD 80
Cdd:COG0601 1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALL----GPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 81 MGRSFRDGRAVSDKIKEALPLSLRLALPSFVFTFVLAIAAAVLSAYHKGGLLDRLIGGISFTLASIPSFVSGVILLIVFA 160
Cdd:COG0601 77 LGTSFVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 161 VKLKIFPVLAMGNANG--------WVLPSIALSLPMIGKYTRQIRAGLIDELGAPYVTALKVRGFKPSIILFGNVLKNCL 232
Cdd:COG0601 157 VKLGWLPVSGRVSPWEdfldalrhLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNAL 236
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 667705096 233 PLVFNLMAMALGYLMAGVTIVENLFAWPGLGSLVMESILFRDYPTVQAFVLISGFTYLVVNMLSDILHKLVDRR 306
Cdd:COG0601 237 IPVVTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPR 310
|
|
| nickel_nikB |
TIGR02789 |
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ... |
1-313 |
9.53e-62 |
|
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131836 [Multi-domain] Cd Length: 314 Bit Score: 198.83 E-value: 9.53e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 1 MKKYIFTKIMHGILLLLCISLLAFVTNFLAEGDPVEMYYIAHNEPlPSPEILAQKRAEAGLNDPWLKQYSRWLGHFIEGD 80
Cdd:TIGR02789 1 MLNYILRRLLLLIPVVLAASLLAFILIHLGPSDPAEDYLRLSHIP-PTDEAIADMRHSLGLDQPLYVQYFHWLWNALHLD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 81 MGRSFRDGRAVSDKIKEALPLSLRLALPSFVFTFVLAIAAAVLSAYHKGGLLDRLIGGISFTLASIPSFVSGVILLIVFA 160
Cdd:TIGR02789 80 FGISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 161 VKLKIFPVLAMGNANGWVLPSIALSLPMIGKYTRQIRAGLIDELGAPYVTALKVRGFKPSIILFGNVLKNCLPLVFNLMA 240
Cdd:TIGR02789 160 VYLNLLPTNGAGTWQHLVLPAVTLALMSVSIYARLLRASMLDNMQERYVTYARVRGIKERWVIRRHILRNAILPMITALG 239
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 667705096 241 MALGYLMAGVTIVENLFAWPGLGSLVMESILFRDYPTVQAFVLISGFTYLVVNMLSDILHKLVDRRPALTNGQ 313
Cdd:TIGR02789 240 MHIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLLFVFCNLIVDLFQALLDPRIRRKEGV 312
|
|
| PRK10352 |
PRK10352 |
nickel transporter permease NikB; Provisional |
24-312 |
3.06e-49 |
|
nickel transporter permease NikB; Provisional
Pssm-ID: 182400 [Multi-domain] Cd Length: 314 Bit Score: 166.41 E-value: 3.06e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 24 FVTNFLAEGDPVEMYYIAHNEPlPSPEILAQKRAEAGLNDPWLKQYSRWLGHFIEGDMGRSFRDGRAVSDKIKEALPLSL 103
Cdd:PRK10352 24 FLMLRLGTGDPALDYLRLSNLP-PTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDFGISFATQRPVLDDLLNFLPATL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 104 RLALPSFVFTFVLAIAAAVLSAYHKGGLLDRLIGGISFTLASIPSFVSGVILLIVFAVKLKIFPVLAMGNANGWVLPSIA 183
Cdd:PRK10352 103 ELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMGYGGWQHIILPAVS 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 184 LSLPMIGKYTRQIRAGLIDELGAPYVTALKVRGFKPSIILFGNVLKNCLPLVFNLMAMALGYLMAGVTIVENLFAWPGLG 263
Cdd:PRK10352 183 IAFMSLAINARLLRASMLEVAGQRHVTWARLRGLSERQVERRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVG 262
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 667705096 264 SLVMESILFRDYPTVQAFVLISGFTYLVVNMLSDILHKLVDRRPALTNG 312
Cdd:PRK10352 263 RYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRIRRHEG 311
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
117-306 |
1.66e-26 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 103.15 E-value: 1.66e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 117 AIAAAVLSAYHKGGLLDRLIGGISFTLASIPSFVsgVILLIVFAVKLKIFPVlamgnangWVLPSIALSLPMIGKYTRQI 196
Cdd:pfam00528 1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFV--LAILLVVIAILSILGH--------GILPAIILALLGWAGYARLI 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 197 RAGLIDELGAPYVTALKVRGFKPSIILFGNVLKNCLPLVFNLMAMALGYLMAGVTIVENLFAWPGLGSLVMESILFRDYP 276
Cdd:pfam00528 71 RRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYP 150
|
170 180 190
....*....|....*....|....*....|
gi 667705096 277 TVQAFVLISGFTYLVVNMLSDILHKLVDRR 306
Cdd:pfam00528 151 EIQGPVLAAALILLLLNLLVDILQRLLDPR 180
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
99-298 |
2.69e-17 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 78.47 E-value: 2.69e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 99 LPLSLRLALPSFVFTFVLAIAAAVLSAYhKGGLLDRLIGGISFTLASIPSFVSGVILLIVFAVKLKIFPVLamgnanGWV 178
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILAR-KRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILP------GLG 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 179 LPSIALSLPMIGKYTRQIRAGLIDELGAPYVTALKVRGFKPSIILFGNVLKNCLPLVFNLMAMALGYLMAGVTIVENLFA 258
Cdd:cd06261 74 LPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGG 153
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 667705096 259 ----WPGLGSLVMESILFrdyptvqAFVLISGFTYLVVNMLSDI 298
Cdd:cd06261 154 geapGPGTGLLLIFAILF-------PGDLGVAAAVALILLLLSL 190
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
1-306 |
7.55e-96 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 285.81 E-value: 7.55e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 1 MKKYIFTKIMHGILLLLCISLLAFVTNFLAEGDPVEMYYiahnEPLPSPEILAQKRAEAGLNDPWLKQYSRWLGHFIEGD 80
Cdd:COG0601 1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALL----GPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 81 MGRSFRDGRAVSDKIKEALPLSLRLALPSFVFTFVLAIAAAVLSAYHKGGLLDRLIGGISFTLASIPSFVSGVILLIVFA 160
Cdd:COG0601 77 LGTSFVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 161 VKLKIFPVLAMGNANG--------WVLPSIALSLPMIGKYTRQIRAGLIDELGAPYVTALKVRGFKPSIILFGNVLKNCL 232
Cdd:COG0601 157 VKLGWLPVSGRVSPWEdfldalrhLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNAL 236
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 667705096 233 PLVFNLMAMALGYLMAGVTIVENLFAWPGLGSLVMESILFRDYPTVQAFVLISGFTYLVVNMLSDILHKLVDRR 306
Cdd:COG0601 237 IPVVTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPR 310
|
|
| nickel_nikB |
TIGR02789 |
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ... |
1-313 |
9.53e-62 |
|
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131836 [Multi-domain] Cd Length: 314 Bit Score: 198.83 E-value: 9.53e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 1 MKKYIFTKIMHGILLLLCISLLAFVTNFLAEGDPVEMYYIAHNEPlPSPEILAQKRAEAGLNDPWLKQYSRWLGHFIEGD 80
Cdd:TIGR02789 1 MLNYILRRLLLLIPVVLAASLLAFILIHLGPSDPAEDYLRLSHIP-PTDEAIADMRHSLGLDQPLYVQYFHWLWNALHLD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 81 MGRSFRDGRAVSDKIKEALPLSLRLALPSFVFTFVLAIAAAVLSAYHKGGLLDRLIGGISFTLASIPSFVSGVILLIVFA 160
Cdd:TIGR02789 80 FGISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 161 VKLKIFPVLAMGNANGWVLPSIALSLPMIGKYTRQIRAGLIDELGAPYVTALKVRGFKPSIILFGNVLKNCLPLVFNLMA 240
Cdd:TIGR02789 160 VYLNLLPTNGAGTWQHLVLPAVTLALMSVSIYARLLRASMLDNMQERYVTYARVRGIKERWVIRRHILRNAILPMITALG 239
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 667705096 241 MALGYLMAGVTIVENLFAWPGLGSLVMESILFRDYPTVQAFVLISGFTYLVVNMLSDILHKLVDRRPALTNGQ 313
Cdd:TIGR02789 240 MHIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLLFVFCNLIVDLFQALLDPRIRRKEGV 312
|
|
| PRK10352 |
PRK10352 |
nickel transporter permease NikB; Provisional |
24-312 |
3.06e-49 |
|
nickel transporter permease NikB; Provisional
Pssm-ID: 182400 [Multi-domain] Cd Length: 314 Bit Score: 166.41 E-value: 3.06e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 24 FVTNFLAEGDPVEMYYIAHNEPlPSPEILAQKRAEAGLNDPWLKQYSRWLGHFIEGDMGRSFRDGRAVSDKIKEALPLSL 103
Cdd:PRK10352 24 FLMLRLGTGDPALDYLRLSNLP-PTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDFGISFATQRPVLDDLLNFLPATL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 104 RLALPSFVFTFVLAIAAAVLSAYHKGGLLDRLIGGISFTLASIPSFVSGVILLIVFAVKLKIFPVLAMGNANGWVLPSIA 183
Cdd:PRK10352 103 ELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMGYGGWQHIILPAVS 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 184 LSLPMIGKYTRQIRAGLIDELGAPYVTALKVRGFKPSIILFGNVLKNCLPLVFNLMAMALGYLMAGVTIVENLFAWPGLG 263
Cdd:PRK10352 183 IAFMSLAINARLLRASMLEVAGQRHVTWARLRGLSERQVERRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVG 262
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 667705096 264 SLVMESILFRDYPTVQAFVLISGFTYLVVNMLSDILHKLVDRRPALTNG 312
Cdd:PRK10352 263 RYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRIRRHEG 311
|
|
| PRK15081 |
PRK15081 |
glutathione ABC transporter permease GsiC; Provisional |
56-304 |
2.07e-39 |
|
glutathione ABC transporter permease GsiC; Provisional
Pssm-ID: 185039 [Multi-domain] Cd Length: 306 Bit Score: 140.62 E-value: 2.07e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 56 RAEAGLNDPWLKQYSRWLGHFIEGDMGRSFRDGRAVSDKIKEALPLSLRLALPSFVFTFVLAIAAAVLSAYHKGGLLDRL 135
Cdd:PRK15081 52 RQQLGLDQPLPHQFWHYISNALQGDFGTSMVSRRPVSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAVWRNRWPDRL 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 136 -----IGGISFtlasiPSFVSGVILLIVFAVKLKIFPVLAMGNANGWVLPSIALSLPMIGKYTRQIRAGLIDELGAPYVT 210
Cdd:PRK15081 132 gmtlaVSGISF-----PAFALGMLLMQVFSVELGWLPTVGADSWQHYILPSLTLGAAVAAVMARFTRASFVEVLSEDYMR 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 211 ALKVRGFKPSIILFGNVLKNCLPLVFNLMAMALGYLMAGVTIVENLFAWPGLGSLVMESILFRDYPTVQAFVLISGFTYL 290
Cdd:PRK15081 207 TARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFI 286
|
250
....*....|....
gi 667705096 291 VVNMLSDILHKLVD 304
Cdd:PRK15081 287 LINLVVDVLYAAIN 300
|
|
| oppB |
PRK09471 |
oligopeptide ABC transporter permease OppB; |
1-304 |
1.12e-37 |
|
oligopeptide ABC transporter permease OppB;
Pssm-ID: 181886 [Multi-domain] Cd Length: 306 Bit Score: 135.96 E-value: 1.12e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 1 MKKYIFTKIMHGILLLLCISLLAFVTNFLAEGDPvemyyIAHNEPLPsPEILAQKRAEAGLNDPWLKQYSRWLGHFIEGD 80
Cdd:PRK09471 1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSP-----FTGERTLP-PEVMANIEAKYHLNDPIMTQYFSYLKQLAHGD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 81 MGRSFR-DGRAVSDKIKEALPLSLRLALPSFVFTFVLAIAAAVLSAYHKGGLLDRLIGGISFTLASIPSFVSGVILLIVF 159
Cdd:PRK09471 75 FGPSFKyKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLIF 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 160 AVKLKIFPvlamgnANGW--------VLPSIALSLPMIGKYTRQIRAGLIDELGAPYVTALKVRGFKPSIILFGNVLKNC 231
Cdd:PRK09471 155 AITLHWLP------GGGWnggalkfmILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPA 228
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 667705096 232 LPLVFNLMAMALGYLMAGVTIVENLFAWPGLGSLVMESILFRDYPTVQAFVLISGFTYLVVNMLSDILHKLVD 304
Cdd:PRK09471 229 LLPVLSYMGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVID 301
|
|
| PRK10914 |
PRK10914 |
dipeptide ABC transporter permease DppB; |
23-306 |
1.23e-30 |
|
dipeptide ABC transporter permease DppB;
Pssm-ID: 182834 [Multi-domain] Cd Length: 339 Bit Score: 117.99 E-value: 1.23e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 23 AFVtnFLAEGDPVemyYIAHNEPLPSPEILAQKRAEAGLNDPWLKQYSRWLGHFIEGDMGRSFRDGRAVSDKIKEALPLS 102
Cdd:PRK10914 25 AFV--HMIPGDPV---MIMAGERGISPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISLKSRIPVWDEFVPRFKAT 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 103 LRLALPSFVFTFVLAIAAAVLSAYHKGGLLDRLIGGISFTLASIPSFVSGVILLIVFAVKLKIFPV-------------- 168
Cdd:PRK10914 100 LELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVsgrvsdmvflddsn 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 169 ----------LAMGNANGW-------VLPSIALSLPMIGKYTRQIRAGLIDELGAPYVTALKVRGFKPSIILFGNVLKNC 231
Cdd:PRK10914 180 pltgfmlidtAIWGEDGNFidavahmILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNA 259
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 667705096 232 LPLVFNLMAMALGYLMAGVTIVENLFAWPGLGSLVMESILFRDYPTVQAFVLISGFTYLVVNMLSDILHKLVDRR 306
Cdd:PRK10914 260 MLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPR 334
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
117-306 |
1.66e-26 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 103.15 E-value: 1.66e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 117 AIAAAVLSAYHKGGLLDRLIGGISFTLASIPSFVsgVILLIVFAVKLKIFPVlamgnangWVLPSIALSLPMIGKYTRQI 196
Cdd:pfam00528 1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFV--LAILLVVIAILSILGH--------GILPAIILALLGWAGYARLI 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 197 RAGLIDELGAPYVTALKVRGFKPSIILFGNVLKNCLPLVFNLMAMALGYLMAGVTIVENLFAWPGLGSLVMESILFRDYP 276
Cdd:pfam00528 71 RRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYP 150
|
170 180 190
....*....|....*....|....*....|
gi 667705096 277 TVQAFVLISGFTYLVVNMLSDILHKLVDRR 306
Cdd:pfam00528 151 EIQGPVLAAALILLLLNLLVDILQRLLDPR 180
|
|
| PRK15133 |
PRK15133 |
microcin C ABC transporter permease YejB; Provisional |
49-306 |
1.26e-20 |
|
microcin C ABC transporter permease YejB; Provisional
Pssm-ID: 185087 [Multi-domain] Cd Length: 364 Bit Score: 90.96 E-value: 1.26e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 49 PEILAQKRAEAGLNDPWLKQYSRWLGHFIEGDMGRSFRDGRAVSDKIKEALPLSLRLALPSFVFTFVLAIAAAVLSAYHK 128
Cdd:PRK15133 83 PEVIAEITHRYGFDKPLHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAVRN 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 129 GGLLDRLIGGISFTLASIPSFVSGVILLIVFA--VKLKIFPVLAMGNANGWVLPSIA--------LSLPM----IGKY-- 192
Cdd:PRK15133 163 GSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAggSYFDLFPLRGLVSANFDSLPWYQkitdylwhITLPVlatvIGGFaa 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 193 -TRQIRAGLIDELGAPYVTALKVRGFKPSIILFGNVLKNCLPLVF-NLMAMALGYLMAGVTIVENLFAWPGLGSLVMESI 270
Cdd:PRK15133 243 lTMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIaGFPATFISMFFTGSLLIEVMFSLNGLGLLGYEAT 322
|
250 260 270
....*....|....*....|....*....|....*.
gi 667705096 271 LFRDYPTVQAFVLISGFTYLVVNMLSDILHKLVDRR 306
Cdd:PRK15133 323 VSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPR 358
|
|
| PRK15110 |
PRK15110 |
peptide ABC transporter permease SapB; |
59-299 |
9.35e-19 |
|
peptide ABC transporter permease SapB;
Pssm-ID: 185065 [Multi-domain] Cd Length: 321 Bit Score: 85.13 E-value: 9.35e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 59 AGLNDPWLkqysRWLGHFIEGDMGRSFRDGRAVSDKIKEALPLSLRLALPSFVFTFVLAIAAAVLSAYHKGGLLDRLIGG 138
Cdd:PRK15110 38 ASLWDAWV----FWFNGLLHWDFGVSSINGQPISEQLKEVFPATMELCILAFGFALLVGIPVGIIAGVTRHKWQDNLISA 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 139 ISFTLASIPSFVSGVILLIVFAVKLKIFPV---------------LAMGNAngW------------------VLPSIALS 185
Cdd:PRK15110 114 LALLGFSIPVFWLALLLTLFFSLTLGWLPVsgrfdllyevkpvtgFALIDA--WlsdspwrdemimsairhmILPVITLA 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 186 LPMIGKYTRQIRAGLIDELGAPYVTALKVRGFKPSIILFGNVLKNCLPLVFNLMAMALGYLMAGVTIVENLFAWPGLGSL 265
Cdd:PRK15110 192 VAPTTEVIRLMRISTIEVYDQNYVKAAATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRW 271
|
250 260 270
....*....|....*....|....*....|....
gi 667705096 266 VMESILFRDYPTVQAFVLISGFTYLVVNMLSDIL 299
Cdd:PRK15110 272 LINAIRQQDYAAISAGVMVVGSLVIIVNVLSDIL 305
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
99-298 |
2.69e-17 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 78.47 E-value: 2.69e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 99 LPLSLRLALPSFVFTFVLAIAAAVLSAYhKGGLLDRLIGGISFTLASIPSFVSGVILLIVFAVKLKIFPVLamgnanGWV 178
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILAR-KRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILP------GLG 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 179 LPSIALSLPMIGKYTRQIRAGLIDELGAPYVTALKVRGFKPSIILFGNVLKNCLPLVFNLMAMALGYLMAGVTIVENLFA 258
Cdd:cd06261 74 LPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGG 153
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 667705096 259 ----WPGLGSLVMESILFrdyptvqAFVLISGFTYLVVNMLSDI 298
Cdd:cd06261 154 geapGPGTGLLLIFAILF-------PGDLGVAAAVALILLLLSL 190
|
|
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
102-245 |
7.72e-10 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 58.59 E-value: 7.72e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 102 SLRLALPSFVFTFVLAIAAAVLSAYhKGGLLDRLIGGISFTLASIPSFvsgvILLIVFAVklkifpvlAMGNanGWVLPS 181
Cdd:COG1173 81 SLLVGLLAVLIALVIGVLLGLLAGY-FGGWVDAVLMRLVDVLLAFPSL----LLAIALVA--------VLGP--GLLNVI 145
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 667705096 182 IALSLPMIGKYTRQIRAGLIDELGAPYVTALKVRGFKPSIILFGNVLKNCLPLVFNLMAMALGY 245
Cdd:COG1173 146 LALGLTGWPGYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIAS 209
|
|
| PRK10913 |
PRK10913 |
dipeptide ABC transporter permease DppC; |
88-235 |
8.35e-06 |
|
dipeptide ABC transporter permease DppC;
Pssm-ID: 182833 [Multi-domain] Cd Length: 300 Bit Score: 46.70 E-value: 8.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667705096 88 GRAVSDKIKEALPLSLRLALPSFVFTFVLAIAAAVLSAYHkGGLLDRLIGGISFTLASIPSFVSGVILLIVFAVklkifp 167
Cdd:PRK10913 87 GRDVLSRLMYGARLSLLVGCLVVVLSLVMGVILGLIAGYF-GGLVDNIIMRVVDIMLALPSLLLALVLVAIFGP------ 159
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 667705096 168 vlAMGNAngwvlpSIALSLPMIGKYTRQIRAGLIDELGAPYVTALKVRGFKPSIILFGNVLKNCL-PLV 235
Cdd:PRK10913 160 --SIVNA------ALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNCLaPLI 220
|
|
| BPD_transp_1_N |
pfam19300 |
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal ... |
48-106 |
7.34e-04 |
|
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal transmembrane domain of the Binding-protein-dependent transport system inner membrane component.
Pssm-ID: 437132 [Multi-domain] Cd Length: 114 Bit Score: 38.74 E-value: 7.34e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 667705096 48 SPEILAQKRAEAGLNDPWLKQYSRWLGHFIEGDM------------GRSFRDGRAVSDKIKEALPLSLRLA 106
Cdd:pfam19300 44 TPETLALIRHNLGLDKPIPVQYWHFLSGIFAGRDfgavghcpapclGYSFANNEPVWDTIMDRFPTTLSLA 114
|
|
| |
