|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
1-264 |
0e+00 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 556.91 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 1 MTESVARLRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVA 80
Cdd:PRK10253 1 MTESVARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 81 RRIGLLAQNATTPGDITVQELVTRGRYPHQPLFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQ 160
Cdd:PRK10253 81 RRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 161 ETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTAELIEKI 240
Cdd:PRK10253 161 ETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIERI 240
|
250 260
....*....|....*....|....
gi 677652373 241 YGLRCMIIDDPVAGTPLVVPLGRR 264
Cdd:PRK10253 241 YGLRCMIIDDPVAGTPLVVPLGRT 264
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
7-260 |
3.77e-137 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 386.32 E-value: 3.77e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 7 RLRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLL 86
Cdd:COG1120 1 MLEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRRELARRIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 87 AQNATTPGDITVQELVTRGRYPHQPLFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIML 166
Cdd:COG1120 81 PQEPPAPFGLTVRELVALGRYPHLGLFGRPSAEDREAVEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEPPLLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 167 LDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTAELIEKIYGLRCM 246
Cdd:COG1120 161 LDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEVLTPELLEEVYGVEAR 240
|
250
....*....|....
gi 677652373 247 IIDDPVAGTPLVVP 260
Cdd:COG1120 241 VIEDPVTGRPLVLP 254
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
8-259 |
6.38e-114 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 327.74 E-value: 6.38e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLA 87
Cdd:PRK11231 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 88 QNATTPGDITVQELVTRGRYPHQPLFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLL 167
Cdd:PRK11231 83 QHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 168 DEPTTWLDISHQIDLLELLSDLNREkGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTAELIEKIYGLRCMI 247
Cdd:PRK11231 163 DEPTTYLDINHQVELMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPGLLRTVFDVEAEI 241
|
250
....*....|..
gi 677652373 248 IDDPVAGTPLVV 259
Cdd:PRK11231 242 HPEPVSGTPMCV 253
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
11-260 |
6.25e-86 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 256.55 E-value: 6.25e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 11 DQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQNA 90
Cdd:COG4604 5 KNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSRELAKRLAILRQEN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 91 TTPGDITVQELVTRGRYPHqplfTRWR--KEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLD 168
Cdd:COG4604 85 HINSRLTVRELVAFGRFPY----SKGRltAEDREIIDEAIAYLDLEDLADRYLDELSGGQRQRAFIAMVLAQDTDYVLLD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 169 EPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTAELIEKIYGLRCMII 248
Cdd:COG4604 161 EPLNNLDMKHSVQMMKLLRRLADELGKTVVIVLHDINFASCYADHIVAMKDGRVVAQGTPEEIITPEVLSDIYDTDIEVE 240
|
250
....*....|..
gi 677652373 249 DdpVAGTPLVVP 260
Cdd:COG4604 241 E--IDGKRICVY 250
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
11-226 |
4.70e-82 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 243.88 E-value: 4.70e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 11 DQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQna 90
Cdd:cd03214 3 ENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 91 ttpgditvqelvtrgryphqplftrwrkedadavasAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEP 170
Cdd:cd03214 81 ------------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEP 124
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 677652373 171 TTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQG 226
Cdd:cd03214 125 TSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
8-260 |
1.26e-80 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 243.14 E-value: 1.26e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLA 87
Cdd:PRK13548 3 LEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 88 QNATTPGDITVQELVTRGRYPHqplfTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQ------E 161
Cdd:PRK13548 83 QHSSLSFPFTVEEVVAMGRAPH----GLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQlwepdgP 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 162 TSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTAELIEKIY 241
Cdd:PRK13548 159 PRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTPETLRRVY 238
|
250
....*....|....*....
gi 677652373 242 GLRCMIIDDPVAGTPLVVP 260
Cdd:PRK13548 239 GADVLVQPHPETGAPLVLP 257
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
8-260 |
1.81e-80 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 242.71 E-value: 1.81e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLA 87
Cdd:COG4559 2 LEAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWELARRRAVLP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 88 QNATTPGDITVQELVTRGRYPHQplftRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQ------- 160
Cdd:COG4559 82 QHSSLAFPFTVEEVVALGRAPHG----SSAAQDRQIVREALALVGLAHLAGRSYQTLSGGEQQRVQLARVLAQlwepvdg 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 161 ETSIMLLDEPTTWLDISHQIDLLELLSDLNREkGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTAELIEKI 240
Cdd:COG4559 158 GPRWLFLDEPTSALDLAHQHAVLRLARQLARR-GGGVVAVLHDLNLAAQYADRILLLHQGRLVAQGTPEEVLTDELLERV 236
|
250 260
....*....|....*....|
gi 677652373 241 YGLRCMIIDDPVAGTPLVVP 260
Cdd:COG4559 237 YGADLRVLAHPEGGCPQVLP 256
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
21-257 |
1.83e-74 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 227.75 E-value: 1.83e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 21 TVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQNATTPGDITVQE 100
Cdd:PRK10575 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 101 LVTRGRYPHQPLFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQI 180
Cdd:PRK10575 105 LVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQV 184
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 677652373 181 DLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTAELIEKIYGLRCMIIDDPVAGTPL 257
Cdd:PRK10575 185 DVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGETLEQIYGIPMGILPHPAGAAPV 261
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-244 |
1.05e-73 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 224.97 E-value: 1.05e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 1 MTESVARLRGdqLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRyaskeVA 80
Cdd:COG1121 2 MMMPAIELEN--LTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRR-----AR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 81 RRIGLLAQNATTPGD--ITVQELVTRGRYPHQPLFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVL 158
Cdd:COG1121 75 RRIGYVPQRAEVDWDfpITVRDVVLMGRYGRRGLFRRPSRADREAVDEALERVGLEDLADRPIGELSGGQQQRVLLARAL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 159 AQETSIMLLDEPTTWLDISHQIDLLELLSDLNREkGYTLAAVLHDLNQACRYATHLIALREGnIVAQGAPKEIVTAELIE 238
Cdd:COG1121 155 AQDPDLLLLDEPFAGVDAATEEALYELLRELRRE-GKTILVVTHDLGAVREYFDRVLLLNRG-LVAHGPPEEVLTPENLS 232
|
....*.
gi 677652373 239 KIYGLR 244
Cdd:COG1121 233 RAYGGP 238
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
13-261 |
1.79e-67 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 214.32 E-value: 1.79e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 13 LTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQNATT 92
Cdd:PRK09536 9 LSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 93 PGDITVQELVTRGRYPHQPLFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTT 172
Cdd:PRK09536 89 SFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTA 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 173 WLDISHQIDLLELLSDLnREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTAELIEKIYGLRCMIIDDPV 252
Cdd:PRK09536 169 SLDINHQVRTLELVRRL-VDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRAAFDARTAVGTDPA 247
|
....*....
gi 677652373 253 AGTPLVVPL 261
Cdd:PRK09536 248 TGAPTVTPL 256
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
8-242 |
3.38e-62 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 195.66 E-value: 3.38e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSYTVA-KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVA---RRI 83
Cdd:COG3638 3 LELRNLSKRYPGGTPAlDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRGRALRrlrRRI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 84 GLLAQNATTPGDITVQELVTRGRYPHQP----LFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLA 159
Cdd:COG3638 83 GMIFQQFNLVPRLSVLTNVLAGRLGRTStwrsLLGLFPPEDRERALEALERVGLADKAYQRADQLSGGQQQRVAIARALV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 160 QETSIMLLDEPTTWLD--ISHQIdlLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEiVTAELI 237
Cdd:COG3638 163 QEPKLILADEPVASLDpkTARQV--MDLLRRIAREDGITVVVNLHQVDLARRYADRIIGLRDGRVVFDGPPAE-LTDAVL 239
|
....*
gi 677652373 238 EKIYG 242
Cdd:COG3638 240 REIYG 244
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
11-226 |
3.71e-61 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 191.98 E-value: 3.71e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 11 DQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRyaskeVARRIGLLAQNA 90
Cdd:cd03235 3 EDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEK-----ERKRIGYVPQRR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 91 TTPGD--ITVQELVTRGRYPHQPLFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLD 168
Cdd:cd03235 78 SIDRDfpISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLD 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 677652373 169 EPTTWLDISHQIDLLELLSDLNREkGYTLAAVLHDLNQACRYATHLIALrEGNIVAQG 226
Cdd:cd03235 158 EPFAGVDPKTQEDIYELLRELRRE-GMTILVVTHDLGLVLEYFDRVLLL-NRTVVASG 213
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
11-239 |
7.68e-59 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 186.38 E-value: 7.68e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 11 DQLTLGY-GSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQN 89
Cdd:COG1122 4 ENLSFSYpGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLRELRRKVGLVFQN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 90 attPGD----ITVQELVTRGryphqPLFTRWRKEDADA-VASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSI 164
Cdd:COG1122 84 ---PDDqlfaPTVEEDVAFG-----PENLGLPREEIRErVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPEV 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 677652373 165 MLLDEPTTWLDISHQIDLLELLSDLNREkGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVT-AELIEK 239
Cdd:COG1122 156 LVLDEPTAGLDPRGRRELLELLKRLNKE-GKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVFSdYELLEE 230
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
8-241 |
1.78e-58 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 186.23 E-value: 1.78e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSYTVA-KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQI---QRYASKEVARRI 83
Cdd:cd03256 1 IEVENLSKTYPNGKKAlKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDInklKGKALRQLRRQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 84 GLLAQNATTPGDITVQELVTRGRYPH----QPLFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLA 159
Cdd:cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRrstwRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 160 QETSIMLLDEPTTWLD--ISHQIdlLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIvTAELI 237
Cdd:cd03256 161 QQPKLILADEPVASLDpaSSRQV--MDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL-TDEVL 237
|
....
gi 677652373 238 EKIY 241
Cdd:cd03256 238 DEIY 241
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
8-242 |
4.04e-57 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 182.50 E-value: 4.04e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSYTVA-KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKE---VARRI 83
Cdd:TIGR02315 2 LEVENLSKVYPNGKQAlKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKlrkLRRRI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 84 GLLAQNATTPGDITVQELVTRGRYPHQP----LFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLA 159
Cdd:TIGR02315 82 GMIFQHYNLIERLTVLENVLHGRLGYKPtwrsLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 160 QETSIMLLDEPTTWLD--ISHQIdlLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIvTAELI 237
Cdd:TIGR02315 162 QQPDLILADEPIASLDpkTSKQV--MDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL-DDEVL 238
|
....*
gi 677652373 238 EKIYG 242
Cdd:TIGR02315 239 RHIYG 243
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
11-241 |
3.62e-49 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 162.16 E-value: 3.62e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 11 DQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRyASKEVARRIGLLAQNA 90
Cdd:COG1131 4 RGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVAR-DPAEVRRRIGYVPQEP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 91 TTPGDITVQELVtrgRYpHQPLFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEP 170
Cdd:COG1131 83 ALYPDLTVRENL---RF-FARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEP 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 677652373 171 TTWLDISHQIDLLELLSDLNREKgytlAAVL---HDLNQACRYATHLIALREGNIVAQGAPKEIvTAELIEKIY 241
Cdd:COG1131 159 TSGLDPEARRELWELLRELAAEG----KTVLlstHYLEEAERLCDRVAIIDKGRIVADGTPDEL-KARLLEDVF 227
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
8-260 |
5.08e-49 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 162.69 E-value: 5.08e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP--------VDGHVWLDGEQIQRYASKEV 79
Cdd:PRK13547 2 LTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGggaprgarVTGDVTLNGEPLAAIDAPRL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 80 ARRIGLLAQNATTPGDITVQELVTRGRYPHQPLFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLA 159
Cdd:PRK13547 82 ARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 160 Q---------ETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKE 230
Cdd:PRK13547 162 QlwpphdaaqPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPAD 241
|
250 260 270
....*....|....*....|....*....|
gi 677652373 231 IVTAELIEKIYGLRCMIIDDPVAGTPLVVP 260
Cdd:PRK13547 242 VLTPAHIARCYGFAVRLVDAGDGVPPVIVP 271
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
11-220 |
3.46e-48 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 158.78 E-value: 3.46e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 11 DQLTLGYGSYTVA--KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQ 88
Cdd:cd03225 3 KNLSFSYPDGARPalDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 89 N------ATTPGDITVQELVTRGRYphqplftrwRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQET 162
Cdd:cd03225 83 NpddqffGPTVEEEVAFGLENLGLP---------EEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDP 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 677652373 163 SIMLLDEPTTWLDISHQIDLLELLSDLNREkGYTLAAVLHDLNQACRYATHLIALREG 220
Cdd:cd03225 154 DILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDG 210
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
8-222 |
1.24e-44 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 149.58 E-value: 1.24e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLA 87
Cdd:COG4619 1 LELEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPPPEWRRQVAYVP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 88 QNATTPGDiTVQELVTRgryphqPLFTRWRKEDADAVASAMRATGIT-SLAAQSVDTLSGGQRQRAWIAMVLAQETSIML 166
Cdd:COG4619 81 QEPALWGG-TVRDNLPF------PFQLRERKFDRERALELLERLGLPpDILDKPVERLSGGERQRLALIRALLLQPDVLL 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 677652373 167 LDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNI 222
Cdd:COG4619 154 LDEPTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
24-240 |
1.48e-44 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 151.45 E-value: 1.48e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQI---QRYASKEVARRIGLLAQnattpgditvqe 100
Cdd:TIGR04521 22 DDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRDItakKKKKLKDLRKKVGLVFQ------------ 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 101 lvtrgrYPHQPLFTR--------------WRKEDADA-VASAMRATGIT-SLAAQSVDTLSGGQRQRAWIAMVLAQETSI 164
Cdd:TIGR04521 90 ------FPEHQLFEEtvykdiafgpknlgLSEEEAEErVKEALELVGLDeEYLERSPFELSGGQMRRVAIAGVLAMEPEV 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 677652373 165 MLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVT-AELIEKI 240
Cdd:TIGR04521 164 LILDEPTAGLDPKGRKEILDLFKRLHKEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDGTPREVFSdVDELEKI 240
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
8-233 |
1.70e-44 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 149.89 E-value: 1.70e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARR-IGLL 86
Cdd:cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLgIGRT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 87 AQNATTPGDITVQELVTRGRYPHQP---LFTRWRKEDADAVASAMRA---TGITSLAAQSVDTLSGGQRQRAWIAMVLAQ 160
Cdd:cd03219 81 FQIPRLFPELTVLENVMVAAQARTGsglLLARARREEREARERAEELlerVGLADLADRPAGELSYGQQRRLEIARALAT 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 677652373 161 ETSIMLLDEPTTWLDISHQIDLLELLSDLnREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVT 233
Cdd:cd03219 161 DPKLLLLDEPAAGLNPEETEELAELIREL-RERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
3-234 |
2.40e-44 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 156.22 E-value: 2.40e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 3 ESVARLRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP---VDGHVWLDGEQIQRYASKEV 79
Cdd:COG1123 2 TPLLEVRDLSVRYPGGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHggrISGEVLLDGRDLLELSEALR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 80 ARRIGLLAQNATTPGD-ITVQELVTRGryphqPLFTRWRKEDADA-VASAMRATGITSLAAQSVDTLSGGQRQRAWIAMV 157
Cdd:COG1123 82 GRRIGMVFQDPMTQLNpVTVGDQIAEA-----LENLGLSRAEARArVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 677652373 158 LAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTA 234
Cdd:COG1123 157 LALDPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAA 233
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
8-226 |
6.61e-44 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 147.67 E-value: 6.61e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEvaRRIGLLA 87
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER--RNIGMVF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 88 QNATTPGDITVQELVTRGRYPHqplftRWRKEDADA-VASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIML 166
Cdd:cd03259 79 QDYALFPHLTVAENIAFGLKLR-----GVPKAEIRArVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 167 LDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQG 226
Cdd:cd03259 154 LDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
7-233 |
9.51e-44 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 148.03 E-value: 9.51e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 7 RLRGdqLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKE---VARRI 83
Cdd:cd03261 2 ELRG--LTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAElyrLRRRM 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 84 GLLAQNATTPGDITVQE-----LVTRGRYPhqplftrwRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVL 158
Cdd:cd03261 80 GMLFQSGALFDSLTVFEnvafpLREHTRLS--------EEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARAL 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 677652373 159 AQETSIMLLDEPTTWLD--ISHQIDllELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVT 233
Cdd:cd03261 152 ALDPELLLYDEPTAGLDpiASGVID--DLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
8-231 |
1.03e-43 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 154.68 E-value: 1.03e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSY-----TVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRY---ASKEV 79
Cdd:COG1123 261 LEVRNLSKRYPVRgkggvRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLsrrSLREL 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 80 ARRIGLLAQNATT---PGDiTVQELVTRGRYPHQPLftrWRKEDADAVASAMRATGI-TSLAAQSVDTLSGGQRQRAWIA 155
Cdd:COG1123 341 RRRVQMVFQDPYSslnPRM-TVGDIIAEPLRLHGLL---SRAERRERVAELLERVGLpPDLADRYPHELSGGQRQRVAIA 416
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 677652373 156 MVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEI 231
Cdd:COG1123 417 RALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEEV 492
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-235 |
2.35e-43 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 147.05 E-value: 2.35e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 1 MTESVARLRGdqLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKE-- 78
Cdd:COG1127 1 MSEPMIEVRN--LTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKEly 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 79 -VARRIGLLAQNATTPGDITVQE-----LVTRGRYPhqplftrwRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRA 152
Cdd:COG1127 79 eLRRRIGMLFQGGALFDSLTVFEnvafpLREHTDLS--------EAEIRELVLEKLELVGLPGAADKMPSELSGGMRKRV 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 153 WIAMVLAQETSIMLLDEPTTWLDI--SHQIDllELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKE 230
Cdd:COG1127 151 ALARALALDPEILLYDEPTAGLDPitSAVID--ELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEE 228
|
....*
gi 677652373 231 IVTAE 235
Cdd:COG1127 229 LLASD 233
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
8-244 |
8.82e-43 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 146.10 E-value: 8.82e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSY----TVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRI 83
Cdd:COG1124 2 LEVRNLSVSYGQGgrrvPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRRKAFRRRV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 84 GLLAQNATT---PGdITVQELVTrgryphQPLFTRWRKEDADAVASAMRATGIT-SLAAQSVDTLSGGQRQRAWIAMVLA 159
Cdd:COG1124 82 QMVFQDPYAslhPR-HTVDRILA------EPLRIHGLPDREERIAELLEQVGLPpSFLDRYPHQLSGGQRQRVAIARALI 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 160 QETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIV------- 232
Cdd:COG1124 155 LEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLLagpkhpy 234
|
250
....*....|..
gi 677652373 233 TAELIEKIYGLR 244
Cdd:COG1124 235 TRELLAASLAFE 246
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
7-231 |
3.52e-42 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 143.86 E-value: 3.52e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 7 RLRGdqLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRL-----MTPVDGHVWLDGEQI--QRYASKEV 79
Cdd:cd03260 2 ELRD--LNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLndlipGAPDEGEVLLDGKDIydLDVDVLEL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 80 ARRIGLLAQNAtTPGDITVQELVtrgRYPHQPLFTRWRKEDADAVASAMRATGITSLAAQSVD--TLSGGQRQRAWIAMV 157
Cdd:cd03260 80 RRRVGMVFQKP-NPFPGSIYDNV---AYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHalGLSGGQQQRLCLARA 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 677652373 158 LAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREkgYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEI 231
Cdd:cd03260 156 LANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
16-217 |
8.47e-42 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 141.60 E-value: 8.47e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 16 GYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVwldgeqiqryaSKEVARRIGLLAQNATTPGD 95
Cdd:NF040873 1 GYGGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTV-----------RRAGGARVAYVPQRSEVPDS 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 96 --ITVQELVTRGRYPHQPLFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTW 173
Cdd:NF040873 70 lpLTVRDLVAMGRWARRGLWRRLTRDDRAAVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTTG 149
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 677652373 174 LDISHQIDLLELLSDLNREkGYTLAAVLHDLNQAcRYATHLIAL 217
Cdd:NF040873 150 LDAESRERIIALLAEEHAR-GATVVVVTHDLELV-RRADPCVLL 191
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
11-231 |
5.02e-41 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 141.15 E-value: 5.02e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 11 DQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYaSKEVARRIGLLAQNA 90
Cdd:COG4555 5 ENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKE-PREARRQIGVLPDER 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 91 TTPGDITVQELVtrgRYpHQPLFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEP 170
Cdd:COG4555 84 GLYDRLTVRENI---RY-FAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 677652373 171 TTWLDISHQIDLLELLSDLNREKGytlaAVL---HDLNQACRYATHLIALREGNIVAQGAPKEI 231
Cdd:COG4555 160 TNGLDVMARRLLREILRALKKEGK----TVLfssHIMQEVEALCDRVVILHKGKVVAQGSLDEL 219
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
11-222 |
9.93e-40 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 135.60 E-value: 9.93e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 11 DQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRyASKEVARRIGLLAQNA 90
Cdd:cd03230 4 RNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKK-EPEEVKRRIGYLPEEP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 91 TTPGDITVQELVtrgryphqplftrwrkedadavasamratgitslaaqsvdTLSGGQRQRAWIAMVLAQETSIMLLDEP 170
Cdd:cd03230 83 SLYENLTVRENL----------------------------------------KLSGGMKQRLALAQALLHDPELLILDEP 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 677652373 171 TTWLDISHQIDLLELLSDLNREKGytlaAVL---HDLNQACRYATHLIALREGNI 222
Cdd:cd03230 123 TSGLDPESRREFWELLRELKKEGK----TILlssHILEEAERLCDRVAILNNGRI 173
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
16-226 |
1.03e-39 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 137.25 E-value: 1.03e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 16 GYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVA---RRIGLLAQNATT 92
Cdd:cd03257 14 GGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKirrKEIQMVFQDPMS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 93 ---PGdITVQELVTRGRYPHQPLFTRWRKEDA---DAVASAMRATGITSLAAQsvdtLSGGQRQRAWIAMVLAQETSIML 166
Cdd:cd03257 94 slnPR-MTIGEQIAEPLRIHGKLSKKEARKEAvllLLVGVGLPEEVLNRYPHE----LSGGQRQRVAIARALALNPKLLI 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 167 LDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQG 226
Cdd:cd03257 169 ADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
8-220 |
2.23e-39 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 135.01 E-value: 2.23e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYA--SKEVARRIGL 85
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEdeLPPLRRRIGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 86 LAQNATTPGDITVQELVTRGryphqplftrwrkedadavasamratgitslaaqsvdtLSGGQRQRAWIAMVLAQETSIM 165
Cdd:cd03229 81 VFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPDVL 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 677652373 166 LLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREG 220
Cdd:cd03229 123 LLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
16-222 |
7.55e-39 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 134.92 E-value: 7.55e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 16 GYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVA----RRIGLLAQNAT 91
Cdd:cd03255 13 GGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAafrrRHIGFVFQSFN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 92 TPGDITVQELVtrgRYPhQPLFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPT 171
Cdd:cd03255 93 LLPDLTALENV---ELP-LLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPT 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 677652373 172 TWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQAcRYATHLIALREGNI 222
Cdd:cd03255 169 GNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELA-EYADRIIELRDGKI 218
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
26-260 |
1.05e-38 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 135.35 E-value: 1.05e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 26 LNVSIPDGHFTAIIGPNGCGKSTLlrtLSRL--MTPVDGHVWLDGEQIQRYASKEVARRIGLLAQNATTPGDITVQELVT 103
Cdd:COG4138 15 ISAQVNAGELIHLIGPNGAGKSTL---LARMagLLPGQGEILLNGRPLSDWSAAELARHRAYLSQQQSPPFAMPVFQYLA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 104 RgrypHQPlftrwRKEDADAVASAM----RATGITSLAAQSVDTLSGGQRQRAWIAMVLAQ-------ETSIMLLDEPTT 172
Cdd:COG4138 92 L----HQP-----AGASSEAVEQLLaqlaEALGLEDKLSRPLTQLSGGEWQRVRLAAVLLQvwptinpEGQLLLLDEPMN 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 173 WLDISHQIDLLELLSDLnREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTAELIEKIYGLRCMIIDdpV 252
Cdd:COG4138 163 SLDVAQQAALDRLLREL-CQQGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAEVMTPENLSEVFGVKFRRLE--V 239
|
....*...
gi 677652373 253 AGTPLVVP 260
Cdd:COG4138 240 EGHRWLIP 247
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
8-231 |
1.20e-38 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 135.55 E-value: 1.20e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRiGlLA 87
Cdd:COG0411 5 LEVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRIARL-G-IA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 88 ---QNATTPGDITVQELVTRGRYPHQPL--------FTRWRKEDADAVASAMRA---TGITSLAAQSVDTLSGGQRQRAW 153
Cdd:COG0411 83 rtfQNPRLFPELTVLENVLVAAHARLGRgllaallrLPRARREEREARERAEELlerVGLADRADEPAGNLSYGQQRRLE 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 677652373 154 IAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEI 231
Cdd:COG0411 163 IARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVMGLADRIVVLDFGRVIAEGTPAEV 240
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
12-220 |
1.67e-38 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 131.98 E-value: 1.67e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 12 QLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQnat 91
Cdd:cd00267 4 NLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ--- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 92 tpgditvqelvtrgryphqplftrwrkedadavasamratgitslaaqsvdtLSGGQRQRAWIAMVLAQETSIMLLDEPT 171
Cdd:cd00267 81 ----------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPT 108
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 677652373 172 TWLDISHQIDLLELLSDLnREKGYTLAAVLHDLNQACRYATHLIALREG 220
Cdd:cd00267 109 SGLDPASRERLLELLREL-AEEGRTVIIVTHDPELAELAADRVIVLKDG 156
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
8-233 |
2.37e-38 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 134.35 E-value: 2.37e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSYTVA-KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLL 86
Cdd:cd03295 1 IEFENVTKRYGGGKKAvNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 87 AQNATTPGDITVQE---LVtrgryphqPLFTRWRKEDADAVAS---AMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQ 160
Cdd:cd03295 81 IQQIGLFPHMTVEEniaLV--------PKLLKWPKEKIRERADellALVGLDPAEFADRYPHELSGGQQQRVGVARALAA 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 677652373 161 ETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVT 233
Cdd:cd03295 153 DPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
24-240 |
2.73e-38 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 135.12 E-value: 2.73e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQNattPGD----ITVQ 99
Cdd:PRK13632 26 KNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQN---PDNqfigATVE 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 100 ELVTRG----RYPhqplftrwRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLD 175
Cdd:PRK13632 103 DDIAFGlenkKVP--------PKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLD 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 677652373 176 ISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRyATHLIALREGNIVAQGAPKEIVT-AELIEKI 240
Cdd:PRK13632 175 PKGKREIKKIMVDLRKTRKKTLISITHDMDEAIL-ADKVIVFSEGKLIAQGKPKEILNnKEILEKA 239
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
3-243 |
3.66e-38 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 134.06 E-value: 3.66e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 3 ESVARLRGdqLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDG-HVWLDGEQIQRYASKEVAR 81
Cdd:COG1119 1 DPLLELRN--VTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGnDVRLFGERRGGEDVWELRK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 82 RIGLL--AQNATTPGDITVQELVTRGRYPHQPLFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLA 159
Cdd:COG1119 79 RIGLVspALQLRFPRDETVLDVVLSGFFDSIGLYREPTDEQRERARELLELLGLAHLADRPFGTLSQGEQRRVLIARALV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 160 QETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTAELIEK 239
Cdd:COG1119 159 KDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHHVEEIPPGITHVLLLKDGRVVAAGPKEEVLTSENLSE 238
|
....
gi 677652373 240 IYGL 243
Cdd:COG1119 239 AFGL 242
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
8-226 |
2.64e-37 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 130.69 E-value: 2.64e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGsyTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGeqiQRYASKEVARR-IGLL 86
Cdd:cd03298 1 VRLDKIRFSYG--EQPMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLING---VDVTAAPPADRpVSML 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 87 AQNATTPGDITVQELVTRGRYPHqplfTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIML 166
Cdd:cd03298 76 FQENNLFAHLTVEQNVGLGLSPG----LKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLL 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 167 LDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQG 226
Cdd:cd03298 152 LDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
16-225 |
1.32e-36 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 129.39 E-value: 1.32e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 16 GYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVA----RRIGLLAQNAT 91
Cdd:COG1136 17 GEGEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSERELArlrrRHIGFVFQFFN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 92 TPGDITVQE-----LVTRGRYphqplftrwRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIML 166
Cdd:COG1136 97 LLPELTALEnvalpLLLAGVS---------RKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARALVNRPKLIL 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 677652373 167 LDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQAcRYATHLIALREGNIVAQ 225
Cdd:COG1136 168 ADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDPELA-ARADRVIRLRDGRIVSD 225
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-231 |
4.32e-36 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 131.37 E-value: 4.32e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 1 MTESVARLRGdqLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRyaskeVA 80
Cdd:COG3842 1 MAMPALELEN--VSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTG-----LP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 81 ---RRIGLLAQN-ATTPgDITVQELVT---RGRyphqplftRWRKEDADA-VASAMRATGITSLAAQSVDTLSGGQRQRA 152
Cdd:COG3842 74 pekRNVGMVFQDyALFP-HLTVAENVAfglRMR--------GVPKAEIRArVAELLELVGLEGLADRYPHQLSGGQQQRV 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 677652373 153 WIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEI 231
Cdd:COG3842 145 ALARALAPEPRVLLLDEPLSALDAKLREEMREELRRLQRELGITFIYVTHDQEEALALADRIAVMNDGRIEQVGTPEEI 223
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
24-172 |
1.01e-35 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 124.68 E-value: 1.01e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQNATTPGDITVQELVT 103
Cdd:pfam00005 2 KNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKEIGYVFQDPQLFPRLTVRENLR 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 677652373 104 RGRYPhQPLFTRWRKEDADAvasAMRATGITSLAAQSVD----TLSGGQRQRAWIAMVLAQETSIMLLDEPTT 172
Cdd:pfam00005 82 LGLLL-KGLSKREKDARAEE---ALEKLGLGDLADRPVGerpgTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
17-231 |
5.07e-35 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 125.49 E-value: 5.07e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 17 YGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRyASKEVA---RRIGLLAQNATTP 93
Cdd:COG1126 11 FGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTD-SKKDINklrRKVGMVFQQFNLF 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 94 GDITVQELVTRGryphqPLFTR-WRKEDADAVASAMRAT-GITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPT 171
Cdd:COG1126 90 PHLTVLENVTLA-----PIKVKkMSKAEAEERAMELLERvGLADKADAYPAQLSGGQQQRVAIARALAMEPKVMLFDEPT 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 677652373 172 TWLD---IShqiDLLELLSDLNREkGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEI 231
Cdd:COG1126 165 SALDpelVG---EVLDVMRDLAKE-GMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPPEEF 223
|
|
| anch_rpt_ABC |
TIGR03771 |
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ... |
28-244 |
6.53e-35 |
|
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 163483 [Multi-domain] Cd Length: 223 Bit Score: 124.96 E-value: 6.53e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 28 VSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEqiqryASKEVARRIGLLAQNATTPGD--ITVQELVTRG 105
Cdd:TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGA-----SPGKGWRHIGYVPQRHEFAWDfpISVAHTVMSG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 106 RYPHQPLFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLEL 185
Cdd:TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTEL 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 677652373 186 LSDLNREkGYTLAAVLHDLNQACrYATHLIALREGNIVAQGAPKEIVTAELIEKIYGLR 244
Cdd:TIGR03771 156 FIELAGA-GTAILMTTHDLAQAM-ATCDRVVLLNGRVIADGTPQQLQDPAPWMTTFGVS 212
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
17-239 |
1.03e-34 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 125.96 E-value: 1.03e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 17 YGSYTVA-KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIqRYASK---EVARRIGLLAQNatt 92
Cdd:PRK13639 11 YPDGTEAlKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPI-KYDKKsllEVRKTVGIVFQN--- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 93 PGD----ITVQELVTRGryphqPLFTRWRKEDADA-VASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLL 167
Cdd:PRK13639 87 PDDqlfaPTVEEDVAFG-----PLNLGLSKEEVEKrVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVL 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 677652373 168 DEPTTWLDISHQIDLLELLSDLNREkGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVT-AELIEK 239
Cdd:PRK13639 162 DEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSdIETIRK 233
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
6-231 |
1.35e-34 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 127.11 E-value: 1.35e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 6 ARLRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEvaRRIGL 85
Cdd:COG3839 2 ASLELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLPPKD--RNIAM 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 86 LAQN-AttpgditvqeLvtrgrYPHQ--------PLftRWRKEDAD----AVASAMRATGITSLAAQSVDTLSGGQRQRA 152
Cdd:COG3839 80 VFQSyA----------L-----YPHMtvyeniafPL--KLRKVPKAeidrRVREAAELLGLEDLLDRKPKQLSGGQRQRV 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 677652373 153 WIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEI 231
Cdd:COG3839 143 ALGRALVREPKVFLLDEPLSNLDAKLRVEMRAEIKRLHRRLGTTTIYVTHDQVEAMTLADRIAVMNDGRIQQVGTPEEL 221
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
6-199 |
1.67e-34 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 123.36 E-value: 1.67e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 6 ARLRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRyASKEVARRIGL 85
Cdd:COG4133 1 MMLEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRD-AREDYRRRLAY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 86 LAQNATTPGDITVQELVTrgryphqpLFTRWRKE--DADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETS 163
Cdd:COG4133 80 LGHADGLKPELTVRENLR--------FWAALYGLraDREAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAP 151
|
170 180 190
....*....|....*....|....*....|....*.
gi 677652373 164 IMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAA 199
Cdd:COG4133 152 LWLLDEPFTALDAAGVALLAELIAAHLARGGAVLLT 187
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-233 |
2.18e-34 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 124.38 E-value: 2.18e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 1 MTESVARLRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRL--MTP---VDGHVWLDGEQIqrYA 75
Cdd:COG1117 5 ASTLEPKIEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRMndLIPgarVEGEILLDGEDI--YD 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 76 SK----EVARRIGLLAQNAtTPGDITVQELVTRG-RYpHQplfTRWRKEDADAVASAMRAtgitslAA----------QS 140
Cdd:COG1117 83 PDvdvvELRRRVGMVFQKP-NPFPKSIYDNVAYGlRL-HG---IKSKSELDEIVEESLRK------AAlwdevkdrlkKS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 141 VDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLD-IS-HQIDllELLSDLnREKgYTLAAVLHDLNQACRYATHLIALR 218
Cdd:COG1117 152 ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDpIStAKIE--ELILEL-KKD-YTIVIVTHNMQQAARVSDYTAFFY 227
|
250
....*....|....*
gi 677652373 219 EGNIVAQGAPKEIVT 233
Cdd:COG1117 228 LGELVEFGPTEQIFT 242
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
24-243 |
2.54e-34 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 125.13 E-value: 2.54e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYAS----KEVARRIGLLAQ-------NATT 92
Cdd:PRK13634 24 YDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKnkklKPLRKKVGIVFQfpehqlfEETV 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 93 PGDITVQelvtrgryphqPLFTRWRKEDADAVASAMRA-TGIT-SLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEP 170
Cdd:PRK13634 104 EKDICFG-----------PMNFGVSEEDAKQKAREMIElVGLPeELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEP 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 677652373 171 TTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIV--TAELIEKIYGL 243
Cdd:PRK13634 173 TAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFadPDELEAIGLDL 247
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
24-231 |
2.95e-34 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 124.74 E-value: 2.95e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQN------ATTPGDIT 97
Cdd:PRK13635 24 KDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNpdnqfvGATVQDDV 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 98 VQELVTRGrYPHQPLFTRwrkedadaVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDIS 177
Cdd:PRK13635 104 AFGLENIG-VPREEMVER--------VDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPR 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 677652373 178 HQIDLLELLSDLNREKGYTLAAVLHDLNQACRyATHLIALREGNIVAQGAPKEI 231
Cdd:PRK13635 175 GRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEI 227
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
8-240 |
5.09e-34 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 122.56 E-value: 5.09e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSYTvaKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEvaRRIGLLA 87
Cdd:COG3840 2 LRLDDLTYRYGDFP--LRFDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPAE--RPVSMLF 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 88 QNATTPGDITVQELVTRGRYPHqplfTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLL 167
Cdd:COG3840 78 QENNLFPHLTVAQNIGLGLRPG----LKLTAEQRAQVEQALERVGLAGLLDRLPGQLSGGQRQRVALARCLVRKRPILLL 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 677652373 168 DEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTAELIEKI 240
Cdd:COG3840 154 DEPFSALDPALRQEMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLDGEPPPAL 226
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
17-222 |
1.34e-33 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 121.10 E-value: 1.34e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 17 YGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQI--QRYASKEVARRIGLLAQNATTPG 94
Cdd:cd03262 10 FGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLtdDKKNINELRQKVGMVFQQFNLFP 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 95 DITVQELVTRGryphqpLFTRWRKEDADAVASAMRA---TGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPT 171
Cdd:cd03262 90 HLTVLENITLA------PIKVKGMSKAEAEERALELlekVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPT 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 677652373 172 TWLDISHQIDLLELLSDLNREkGYTLAAVLHDLNQACRYATHLIALREGNI 222
Cdd:cd03262 164 SALDPELVGEVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
24-244 |
3.98e-33 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 121.77 E-value: 3.98e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQNattPGD----ITVQ 99
Cdd:PRK13647 22 KGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQD---PDDqvfsSTVW 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 100 ELVTRGryphqPLFTRWRKEDADA-VASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISH 178
Cdd:PRK13647 99 DDVAFG-----PVNMGLDKDEVERrVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRG 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 677652373 179 QIDLLELLSDLNREkGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPkEIVTAELIEKIYGLR 244
Cdd:PRK13647 174 QETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDK-SLLTDEDIVEQAGLR 237
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
11-225 |
1.43e-32 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 118.73 E-value: 1.43e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 11 DQLTLGYGS----YTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRyaskeVARRIGLL 86
Cdd:cd03293 4 RNVSKTYGGgggaVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDRGYV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 87 AQNATTPGDITVQELVTRGryphqPLFTRWRKEDADAVASAM-RATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIM 165
Cdd:cd03293 79 FQQDALLPWLTVLDNVALG-----LELQGVPKAEARERAEELlELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 677652373 166 LLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIAL--REGNIVAQ 225
Cdd:cd03293 154 LLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLsaRPGRIVAE 215
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
8-230 |
4.19e-32 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 118.58 E-value: 4.19e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMT---PVDGHVWLDGEQIQRyaSKEVARRI- 83
Cdd:PRK09984 5 IRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITgdkSAGSHIELLGRTVQR--EGRLARDIr 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 84 ------GLLAQNATTPGDITVQELVTRGRYPHQPL-------FTRWRKEDAdavASAMRATGITSLAAQSVDTLSGGQRQ 150
Cdd:PRK09984 83 ksrantGYIFQQFNLVNRLSVLENVLIGALGSTPFwrtcfswFTREQKQRA---LQALTRVGMVHFAHQRVSTLSGGQQQ 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 151 RAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKE 230
Cdd:PRK09984 160 RVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQ 239
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
11-231 |
4.40e-32 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 117.47 E-value: 4.40e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 11 DQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRyASKEVARRIGLLAQNA 90
Cdd:cd03265 4 ENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIGIVFQDL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 91 TTPGDITVQELVtrgrYPHQPLFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEP 170
Cdd:cd03265 83 SVDDELTGWENL----YIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEP 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 677652373 171 TTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEI 231
Cdd:cd03265 159 TIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
8-231 |
4.78e-32 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 117.15 E-value: 4.78e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARR-IGLL 86
Cdd:cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAgIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 87 AQNATTPGDITVQELVTRGRYPHQPLFTRWRKEDADAVASAMRAtgitsLAAQSVDTLSGGQRQRAWIAMVLAQETSIML 166
Cdd:cd03224 81 PEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKE-----RRKQLAGTLSGGEQQMLAIARALMSRPKLLL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 677652373 167 LDEPTTWL--DISHQIdlLELLSDLNREkGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEI 231
Cdd:cd03224 156 LDEPSEGLapKIVEEI--FEAIRELRDE-GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
24-243 |
8.80e-32 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 118.23 E-value: 8.80e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQI--QRYASKEVARRIGLLAQnattpgditvqel 101
Cdd:PRK13637 24 DNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDItdKKVKLSDIRKKVGLVFQ------------- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 102 vtrgrYPHQPLFTRWRKED---------------ADAVASAMRATGIT--SLAAQSVDTLSGGQRQRAWIAMVLAQETSI 164
Cdd:PRK13637 91 -----YPEYQLFEETIEKDiafgpinlglseeeiENRVKRAMNIVGLDyeDYKDKSPFELSGGQKRRVAIAGVVAMEPKI 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 165 MLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVT-AELIEKIyGL 243
Cdd:PRK13637 166 LILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKeVETLESI-GL 244
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
8-230 |
1.36e-31 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 122.17 E-value: 1.36e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGY-GSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLL 86
Cdd:COG4988 337 IELEDVSFSYpGGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPASWRRQIAWV 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 87 AQNATTPGDiTVQELVTRGRyphqplftrwrkEDAD--AVASAMRATGITSLAAQS---VDT--------LSGGQRQRAW 153
Cdd:COG4988 417 PQNPYLFAG-TIRENLRLGR------------PDASdeELEAALEAAGLDEFVAALpdgLDTplgeggrgLSGGQAQRLA 483
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 677652373 154 IAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKgyTLAAVLHDLNQAcRYATHLIALREGNIVAQGAPKE 230
Cdd:COG4988 484 LARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGR--TVILITHRLALL-AQADRILVLDDGRIVEQGTHEE 557
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
17-231 |
1.80e-31 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 116.18 E-value: 1.80e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 17 YGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEvaRRIGLLAQN-ATTPgD 95
Cdd:cd03300 10 YGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHK--RPVNTVFQNyALFP-H 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 96 ITVQELVTRGryphqplfTRWRKEDADA----VASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPT 171
Cdd:cd03300 87 LTVFENIAFG--------LRLKKLPKAEikerVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 172 TWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEI 231
Cdd:cd03300 159 GALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
21-233 |
5.81e-31 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 115.82 E-value: 5.81e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 21 TVA-KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEV----ARRIGLLAQN-ATTPg 94
Cdd:cd03294 37 TVGvNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELrelrRKKISMVFQSfALLP- 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 95 DITVQELVTRG-RYPHQPlftrwRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTW 173
Cdd:cd03294 116 HRTVLENVAFGlEVQGVP-----RAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSA 190
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 174 LDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVT 233
Cdd:cd03294 191 LDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
17-231 |
6.36e-31 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 114.74 E-value: 6.36e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 17 YGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEvaRRIGLLAQNATTPGDI 96
Cdd:cd03296 12 FGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE--RNVGFVFQHYALFRHM 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 97 TVQELVTRGrYPHQPLFTRWRKEDADA-VASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLD 175
Cdd:cd03296 90 TVFDNVAFG-LRVKPRSERPPEAEIRAkVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALD 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 677652373 176 ISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEI 231
Cdd:cd03296 169 AKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
24-231 |
9.93e-31 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 115.72 E-value: 9.93e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQrYASK---EVARRIGLLAQNATTP-GDITVQ 99
Cdd:PRK13636 23 KGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPID-YSRKglmKLRESVGMVFQDPDNQlFSASVY 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 100 ELVTRGRYPHQ-PlftrwRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISH 178
Cdd:PRK13636 102 QDVSFGAVNLKlP-----EDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMG 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 677652373 179 QIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEI 231
Cdd:PRK13636 177 VSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 229
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
24-231 |
2.02e-30 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 113.58 E-value: 2.02e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEvaRRIGLLAQNATTPGDITVQELVT 103
Cdd:cd03299 16 KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEK--RDISYVPQNYALFPHMTVYKNIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 104 RGryphQPLFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLL 183
Cdd:cd03299 94 YG----LKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLR 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 677652373 184 ELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEI 231
Cdd:cd03299 170 EELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEV 217
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
17-223 |
4.26e-30 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 111.96 E-value: 4.26e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 17 YGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEvaRRIGLLAQNATTpgdi 96
Cdd:cd03301 10 FGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD--RDIAMVFQNYAL---- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 97 tvqelvtrgrYPHQPLFT------RWRKEDADA----VASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIML 166
Cdd:cd03301 84 ----------YPHMTVYDniafglKLRKVPKDEiderVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFL 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 677652373 167 LDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIV 223
Cdd:cd03301 154 MDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
6-232 |
4.74e-30 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 117.94 E-value: 4.74e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 6 ARLRGDQLTLGY--GSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRI 83
Cdd:COG4987 332 PSLELEDVSFRYpgAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDDLRRRI 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 84 GLLAQNAttpgditvqelvtrgryphqPLFT-------RWRKEDA--DAVASAMRATGITSLAAQSVD-----------T 143
Cdd:COG4987 412 AVVPQRP--------------------HLFDttlrenlRLARPDAtdEELWAALERVGLGDWLAALPDgldtwlgeggrR 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 144 LSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKgyTLAAVLHDLnQACRYATHLIALREGNIV 223
Cdd:COG4987 472 LSGGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALAGR--TVLLITHRL-AGLERMDRILVLEDGRIV 548
|
....*....
gi 677652373 224 AQGAPKEIV 232
Cdd:COG4987 549 EQGTHEELL 557
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
25-226 |
4.93e-30 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 112.00 E-value: 4.93e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 25 NLNVSIP-DGHFTAIIGPNGCGKSTLLRTLSRLMTP------VDGHVWLDGEQIQRYASKEvaRRIGLLAQNATTPGDIT 97
Cdd:cd03297 14 TLKIDFDlNEEVTGIFGASGAGKSTLLRCIAGLEKPdggtivLNGTVLFDSRKKINLPPQQ--RKIGLVFQQYALFPHLN 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 98 VQELVTRGryphqpLFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDIS 177
Cdd:cd03297 92 VRENLAFG------LKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRA 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 677652373 178 HQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQG 226
Cdd:cd03297 166 LRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
11-226 |
5.40e-30 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 111.52 E-value: 5.40e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 11 DQLTLGYGSYTVAKNLNVSIPDGhFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKeVARRIGLLAQNA 90
Cdd:cd03264 4 ENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQK-LRRRIGYLPQEF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 91 TTPGDITVQELVTrgrypHQPLFTRWRKEDADA-VASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDE 169
Cdd:cd03264 82 GVYPNFTVREFLD-----YIAWLKGIPSKEVKArVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDE 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 677652373 170 PTTWLDISHQIDLLELLSDLNREKGYTLAAvlHDLNQACRYATHLIALREGNIVAQG 226
Cdd:cd03264 157 PTAGLDPEERIRFRNLLSELGEDRIVILST--HIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-224 |
9.09e-30 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 112.49 E-value: 9.09e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 1 MTESVARLRGDQLTLGY----GSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIqryas 76
Cdd:COG1116 1 MSAAAPALELRGVSKRFptggGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPV----- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 77 KEVARRIGLLAQNATtpgdiTVQE-----LVTRGRYphqplftrwRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQR 151
Cdd:COG1116 76 TGPGPDRGVVFQEPAllpwlTVLDnvalgLELRGVP---------KAERRERARELLELVGLAGFEDAYPHQLSGGMRQR 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 677652373 152 AWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIAL--REGNIVA 224
Cdd:COG1116 147 VAIARALANDPEVLLMDEPFGALDALTRERLQDELLRLWQETGKTVLFVTHDVDEAVFLADRVVVLsaRPGRIVE 221
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
13-239 |
1.01e-29 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 111.93 E-value: 1.01e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 13 LTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLM-----TPVDGHVWLDGEQIQRYASKEVARRIGLLA 87
Cdd:PRK14247 9 LKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIelypeARVSGEVYLDGQDIFKMDVIELRRRVQMVF 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 88 QNATTPGDITVQELVTRGryPHQPLFTRWRKEDADAVASAMRATGITSLAAQSVD----TLSGGQRQRAWIAMVLAQETS 163
Cdd:PRK14247 89 QIPNPIPNLSIFENVALG--LKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDapagKLSGGQQQRLCIARALAFQPE 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 677652373 164 IMLLDEPTTWLDISHQIDLLELLSDLNREkgYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTA---ELIEK 239
Cdd:PRK14247 167 VLLADEPTANLDPENTAKIESLFLELKKD--MTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNprhELTEK 243
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
18-235 |
1.07e-29 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 112.59 E-value: 1.07e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 18 GSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQNattPGD-- 95
Cdd:PRK13652 15 GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQN---PDDqi 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 96 --ITVQELVTRGryphqPLFTRWRKED-ADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTT 172
Cdd:PRK13652 92 fsPTVEQDIAFG-----PINLGLDEETvAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTA 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 677652373 173 WLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTAE 235
Cdd:PRK13652 167 GLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
17-233 |
1.27e-29 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 111.34 E-value: 1.27e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 17 YGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKE--VARRIGLLAQNATTPG 94
Cdd:PRK09493 11 FGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDErlIRQEAGMVFQQFYLFP 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 95 DITVQELVTRGryphqPLFTR-WRKEDADAVASAMRA-TGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTT 172
Cdd:PRK09493 91 HLTALENVMFG-----PLRVRgASKEEAEKQARELLAkVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTS 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 677652373 173 WLDISHQIDLLELLSDLnREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVT 233
Cdd:PRK09493 166 ALDPELRHEVLKVMQDL-AEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
24-231 |
3.31e-29 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 111.00 E-value: 3.31e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQNATTP--GDItVQEL 101
Cdd:PRK13648 26 KDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQfvGSI-VKYD 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 102 VTRG----RYPHQPLFTRwrkedadaVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDIS 177
Cdd:PRK13648 105 VAFGlenhAVPYDEMHRR--------VSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPD 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 677652373 178 HQIDLLELLSDLNREKGYTLAAVLHDLNQACRyATHLIALREGNIVAQGAPKEI 231
Cdd:PRK13648 177 ARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEI 229
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
11-231 |
3.68e-29 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 112.55 E-value: 3.68e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 11 DQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIqrYASKEV-ARRIGLLAQN 89
Cdd:COG1118 6 RNISKRFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDL--FTNLPPrERRVGFVFQH 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 90 A--------------------TTPGDI--TVQELVTR-------GRYPHQplftrwrkedadavasamratgitslaaqs 140
Cdd:COG1118 84 YalfphmtvaeniafglrvrpPSKAEIraRVEELLELvqleglaDRYPSQ------------------------------ 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 141 vdtLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREG 220
Cdd:COG1118 134 ---LSGGQRQRVALARALAVEPEVLLLDEPFGALDAKVRKELRRWLRRLHDELGGTTVFVTHDQEEALELADRVVVMNQG 210
|
250
....*....|.
gi 677652373 221 NIVAQGAPKEI 231
Cdd:COG1118 211 RIEQVGTPDEV 221
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
22-243 |
3.69e-29 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 111.43 E-value: 3.69e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 22 VAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVD---GHVWLDGEQIQRYASKEVARRIGLLAQN------ATT 92
Cdd:PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDnpnSKITVDGITLTAKTVWDIREKVGIVFQNpdnqfvGAT 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 93 PGDITVQELVTRGrYPhqplftrwRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTT 172
Cdd:PRK13640 102 VGDDVAFGLENRA-VP--------RPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTS 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 677652373 173 WLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQAcRYATHLIALREGNIVAQGAPKEIVTAELIEKIYGL 243
Cdd:PRK13640 173 MLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEIFSKVEMLKEIGL 242
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
27-226 |
3.75e-29 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 109.57 E-value: 3.75e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 27 NVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEvaRRIGLLAQNATTPGDITVQELVTRGR 106
Cdd:TIGR01277 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQ--RPVSMLFQENNLFAHLTVRQNIGLGL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 107 YPHQPLfTRWRKEDADAVASAMratGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELL 186
Cdd:TIGR01277 96 HPGLKL-NAEQQEKVVDAAQQV---GIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALV 171
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 677652373 187 SDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQG 226
Cdd:TIGR01277 172 KQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
26-250 |
4.72e-29 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 110.02 E-value: 4.72e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 26 LNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLmTPVDGHVWLDGEQIQRYASKEVARRIGLLAQNATTPGDITVQELVTRg 105
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGL-LPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTL- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 106 rypHQPLFTRWRkEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQ-------ETSIMLLDEPTTWLDISH 178
Cdd:PRK03695 93 ---HQPDKTRTE-AVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQvwpdinpAGQLLLLDEPMNSLDVAQ 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 677652373 179 QIDLLELLSDLNREKGytlaAVL---HDLNQACRYATHLIALREGNIVAQGAPKEIVTAELIEKIYGL--RCMIIDD 250
Cdd:PRK03695 169 QAALDRLLSELCQQGI----AVVmssHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPENLAQVFGVnfRRLDVEG 241
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
11-241 |
7.12e-29 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 109.30 E-value: 7.12e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 11 DQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARR-IGLLAQN 89
Cdd:COG0410 7 ENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRIARLgIGYVPEG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 90 ATTPGDITVQE-LVTrGRYPHqplftRWRKEDADAVASA---------MRatgitslaAQSVDTLSGGQRQRAWIAMVLA 159
Cdd:COG0410 87 RRIFPSLTVEEnLLL-GAYAR-----RDRAEVRADLERVyelfprlkeRR--------RQRAGTLSGGEQQMLAIGRALM 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 160 QETSIMLLDEPTtwLDISHQI--DLLELLSDLNREkGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTAELI 237
Cdd:COG0410 153 SRPKLLLLDEPS--LGLAPLIveEIFEIIRRLNRE-GVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAELLADPEV 229
|
....
gi 677652373 238 EKIY 241
Cdd:COG0410 230 REAY 233
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
16-231 |
1.05e-28 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 108.82 E-value: 1.05e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 16 GYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEV---ARRIGLLAQNATT 92
Cdd:cd03258 14 TGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELrkaRRRIGMIFQHFNL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 93 PGDITVQELVTrgrYPHQplFTRWRKEDADA-VASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPT 171
Cdd:cd03258 94 LSSRTVFENVA---LPLE--IAGVPKAEIEErVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEAT 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 677652373 172 TWLD--ISHQIdlLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEI 231
Cdd:cd03258 169 SALDpeTTQSI--LALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
11-220 |
1.55e-28 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 106.70 E-value: 1.55e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 11 DQLTLGYGS--YTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQ 88
Cdd:cd03228 4 KNVSFSYPGrpKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 89 NATtpgditvqelvtrgryphqpLFTrwrkedadavasamratgitslaaqsvDT-----LSGGQRQRAWIAMVLAQETS 163
Cdd:cd03228 84 DPF--------------------LFS---------------------------GTireniLSGGQRQRIAIARALLRDPP 116
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 677652373 164 IMLLDEPTTWLDISHQIDLLELLSDLNREKgyTLAAVLHDLNQAcRYATHLIALREG 220
Cdd:cd03228 117 ILILDEATSALDPETEALILEALRALAKGK--TVIVIAHRLSTI-RDADRIIVLDDG 170
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
9-223 |
2.24e-28 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 107.34 E-value: 2.24e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 9 RGDQLTLGYG-SYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIqryASKEVARRIGLLA 87
Cdd:cd03226 1 RIENISFSYKkGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPI---KAKERRKSIGYVM 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 88 QNattPGDI----TVQELVTRGryphqplftrwrKEDADA----VASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLA 159
Cdd:cd03226 78 QD---VDYQlftdSVREELLLG------------LKELDAgneqAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALL 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 677652373 160 QETSIMLLDEPTTWLDISHqidlLELLSDLNRE---KGYTLAAVLHDLNQACRYATHLIALREGNIV 223
Cdd:cd03226 143 SGKDLLIFDEPTSGLDYKN----MERVGELIRElaaQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
1-231 |
7.60e-28 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 109.65 E-value: 7.60e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 1 MTESVARLRGdqLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKevA 80
Cdd:PRK09452 10 SLSPLVELRG--ISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--N 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 81 RRIGLLAQN-ATTPgDITVQELVTRG----RYPHQPLFTRwrkedadaVASAMRATGITSLAAQSVDTLSGGQRQRAWIA 155
Cdd:PRK09452 86 RHVNTVFQSyALFP-HMTVFENVAFGlrmqKTPAAEITPR--------VMEALRMVQLEEFAQRKPHQLSGGQQQRVAIA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 677652373 156 MVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEI 231
Cdd:PRK09452 157 RAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREI 232
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
11-235 |
7.92e-28 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 111.85 E-value: 7.92e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 11 DQLTLGYGSYTVA--KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQ 88
Cdd:COG2274 477 ENVSFRYPGDSPPvlDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQIDPASLRRQIGVVLQ 556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 89 NATT-PGdiTVQELVTRGRyPHQPLftrwrkedaDAVASAMRATGITSLAAQ---SVDT--------LSGGQRQRAWIAM 156
Cdd:COG2274 557 DVFLfSG--TIRENITLGD-PDATD---------EEIIEAARLAGLHDFIEAlpmGYDTvvgeggsnLSGGQRQRLAIAR 624
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 677652373 157 VLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKgyTLAAVLHDLNQAcRYATHLIALREGNIVAQGAPKEIVTAE 235
Cdd:COG2274 625 ALLRNPRILILDEATSALDAETEAIILENLRRLLKGR--TVIIIAHRLSTI-RLADRIIVLDKGRIVEDGTHEELLARK 700
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
25-204 |
1.41e-27 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 107.83 E-value: 1.41e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 25 NLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP---VDGHVWLDGEQIQRYASKEV----ARRIGLLAQNATT---PG 94
Cdd:COG0444 23 GVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPpgiTSGEILFDGEDLLKLSEKELrkirGREIQMIFQDPMTslnPV 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 95 dITVQELVTRGRYPHQPLftrwRKEDADA-VASAMRATGITSlAAQSVD----TLSGGQRQRAWIAMVLAQETSIMLLDE 169
Cdd:COG0444 103 -MTVGDQIAEPLRIHGGL----SKAEARErAIELLERVGLPD-PERRLDryphELSGGMRQRVMIARALALEPKLLIADE 176
|
170 180 190
....*....|....*....|....*....|....*..
gi 677652373 170 PTTWLDISHQIDLLELLSDLNREKGytLAAVL--HDL 204
Cdd:COG0444 177 PTTALDVTIQAQILNLLKDLQRELG--LAILFitHDL 211
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
25-240 |
1.52e-27 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 107.14 E-value: 1.52e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 25 NLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYAS----KEVARRIGLLAQNATTP-GDITVQ 99
Cdd:PRK13649 25 DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKnkdiKQIRKKVGLVFQFPESQlFEETVL 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 100 ELVTRGryphqPLFTRWRKEDADAVA-SAMRATGIT-SLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDIS 177
Cdd:PRK13649 105 KDVAFG-----PQNFGVSQEEAEALArEKLALVGISeSLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPK 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 677652373 178 HQIDLLELLSDLNrEKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVT-AELIEKI 240
Cdd:PRK13649 180 GRKELMTLFKKLH-QSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQdVDFLEEK 242
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
8-211 |
4.71e-27 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 105.25 E-value: 4.71e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRL--MTP---VDGHVWLDGEQIqrYASK----E 78
Cdd:PRK14243 11 LRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLndLIPgfrVEGKVTFHGKNL--YAPDvdpvE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 79 VARRIGLLAQNATT-PGDI---------------TVQELVTRGRypHQPLFtrWrkedaDAVASAMRATGItslaaqsvd 142
Cdd:PRK14243 89 VRRRIGMVFQKPNPfPKSIydniaygaringykgDMDELVERSL--RQAAL--W-----DEVKDKLKQSGL--------- 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 677652373 143 TLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREkgYTLAAVLHDLNQACRYA 211
Cdd:PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ--YTIIIVTHNMQQAARVS 217
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
22-239 |
5.26e-27 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 105.13 E-value: 5.26e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 22 VAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLM------TPVDGHVWLDGEQIQRYASKEVARRIGLLAQNATTPGD 95
Cdd:PRK14246 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIeiydskIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPH 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 96 ITVQELVTrgrYPHQPLFTRWRKEDADAVASAMRATGITSLAAQSVDT----LSGGQRQRAWIAMVLAQETSIMLLDEPT 171
Cdd:PRK14246 105 LSIYDNIA---YPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSpasqLSGGQQQRLTIARALALKPKVLLMDEPT 181
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 677652373 172 TWLDISHQIDLLELLSDLNREkgYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTA---ELIEK 239
Cdd:PRK14246 182 SMIDIVNSQAIEKLITELKNE--IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSpknELTEK 250
|
|
| type_I_sec_LssB |
TIGR03375 |
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some ... |
7-236 |
5.96e-27 |
|
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274550 [Multi-domain] Cd Length: 694 Bit Score: 109.19 E-value: 5.96e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 7 RLRGD----QLTLGY-GSYTVA-KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVA 80
Cdd:TIGR03375 459 RLQGEiefrNVSFAYpGQETPAlDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLR 538
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 81 RRIGLLAQNATT-PGdiTVQELVTRGRyphqPLFTrwrkeDADAVASAMRAtGITSLAAQSVD-----------TLSGGQ 148
Cdd:TIGR03375 539 RNIGYVPQDPRLfYG--TLRDNIALGA----PYAD-----DEEILRAAELA-GVTEFVRRHPDgldmqigergrSLSGGQ 606
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 149 RQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKgyTLAAVLHDLnQACRYATHLIALREGNIVAQGaP 228
Cdd:TIGR03375 607 RQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGK--TLVLVTHRT-SLLDLVDRIIVMDNGRIVADG-P 682
|
....*...
gi 677652373 229 KEIVTAEL 236
Cdd:TIGR03375 683 KDQVLEAL 690
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
11-230 |
9.20e-27 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 103.59 E-value: 9.20e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 11 DQLTLGY-GSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVA---RRIG-- 84
Cdd:COG2884 5 ENVSKRYpGGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREIPylrRRIGvv 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 85 -----LLAqnattpgDITVQE-----LVTRGRYphqplftrwRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWI 154
Cdd:COG2884 85 fqdfrLLP-------DRTVYEnvalpLRVTGKS---------RKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAI 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 677652373 155 AMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKgytlAAVL---HDLNQACRYATHLIALREGNIVAQGAPKE 230
Cdd:COG2884 149 ARALVNRPELLLADEPTGNLDPETSWEIMELLEEINRRG----TTVLiatHDLELVDRMPKRVLELEDGRLVRDEARGV 223
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
4-264 |
1.25e-26 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 105.27 E-value: 1.25e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 4 SVARLRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYAsKEVARRI 83
Cdd:PRK13537 4 SVAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 84 GLLAQNATTPGDITVQE-LVTRGRYphqplFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQET 162
Cdd:PRK13537 83 GVVPQFDNLDPDFTVREnLLVFGRY-----FGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDP 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 163 SIMLLDEPTTWLDISHQIDLLELLSDLnREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTAEL---IEK 239
Cdd:PRK13537 158 DVLVLDEPTTGLDPQARHLMWERLRSL-LARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESEIgcdVIE 236
|
250 260
....*....|....*....|....*
gi 677652373 240 IYGlrcmiiDDPVAGTPLVVPLGRR 264
Cdd:PRK13537 237 IYG------PDPVALRDELAPLAER 255
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
25-254 |
1.79e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 104.53 E-value: 1.79e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 25 NLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYAS----KEVARRIGLLAQNATTP-GDITVQ 99
Cdd:PRK13641 25 NISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGnknlKKLRKKVSLVFQFPEAQlFENTVL 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 100 ELVTRGryphqPL-FTRWRKEDADAVASAMRATGI-TSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDIS 177
Cdd:PRK13641 105 KDVEFG-----PKnFGFSEDEAKEKALKWLKKVGLsEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPE 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 677652373 178 HQIDLLELLSDLNREkGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVT-AELIEKIYglrcmiIDDPVAG 254
Cdd:PRK13641 180 GRKEMMQLFKDYQKA-GHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSdKEWLKKHY------LDEPATS 250
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
11-222 |
2.09e-26 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 107.07 E-value: 2.09e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 11 DQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQiqryaskevarRIGLLAQNA 90
Cdd:COG0488 2 ENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPKGL-----------RIGYLPQEP 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 91 TTPGDITVQELVTRGRYPHQPLFTRWRK----------------------EDADA------VASAMRATGIT-SLAAQSV 141
Cdd:COG0488 71 PLDDDLTVLDTVLDGDAELRALEAELEEleaklaepdedlerlaelqeefEALGGweaearAEEILSGLGFPeEDLDRPV 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 142 DTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDIsHQIDLLEllSDLNREKGyTLAAVLHD---LNQACryaTHLIALR 218
Cdd:COG0488 151 SELSGGWRRRVALARALLSEPDLLLLDEPTNHLDL-ESIEWLE--EFLKNYPG-TVLVVSHDryfLDRVA---TRILELD 223
|
....
gi 677652373 219 EGNI 222
Cdd:COG0488 224 RGKL 227
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
16-231 |
2.15e-26 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 102.58 E-value: 2.15e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 16 GYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIqRYASKEVARRIGLLAQNATTPGD 95
Cdd:cd03263 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSI-RTDRKAARQSLGYCPQFDALFDE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 96 ITVQELVTrgryphqpLFTRWR---KEDADAVASAM-RATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPT 171
Cdd:cd03263 90 LTVREHLR--------FYARLKglpKSEIKEEVELLlRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPT 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 677652373 172 TWLDISHQIDLLELLSDLNREKgytlAAVL--HDLNQACRYATHLIALREGNIVAQGAPKEI 231
Cdd:cd03263 162 SGLDPASRRAIWDLILEVRKGR----SIILttHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
13-239 |
2.49e-26 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 103.00 E-value: 2.49e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 13 LTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLM-----TPVDGHVWLDGEQIqrYASK----EVARRI 83
Cdd:PRK14267 10 LRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLelneeARVEGEVRLFGRNI--YSPDvdpiEVRREV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 84 GLLAQNATTPGDITVQELVTRGRYPHQplFTRWRKEDADAVASAMRATGITSLAAQSVD----TLSGGQRQRAWIAMVLA 159
Cdd:PRK14267 88 GMVFQYPNPFPHLTIYDNVAIGVKLNG--LVKSKKELDERVEWALKKAALWDEVKDRLNdypsNLSGGQRQRLVIARALA 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 160 QETSIMLLDEPTTWLDISHQIDLLELLSDLNREkgYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIV---TAEL 236
Cdd:PRK14267 166 MKPKILLMDEPTANIDPVGTAKIEELLFELKKE--YTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFenpEHEL 243
|
...
gi 677652373 237 IEK 239
Cdd:PRK14267 244 TEK 246
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
27-235 |
2.91e-26 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 102.35 E-value: 2.91e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 27 NVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGeqiQRYASKEVARR-IGLLAQNATTPGDITVQELVTRG 105
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNG---QDHTTTPPSRRpVSMLFQENNLFSHLTVAQNIGLG 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 106 RYPHQPLfTRWRKEDADAVASAMratGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLEL 185
Cdd:PRK10771 96 LNPGLKL-NAAQREKLHAIARQM---GIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTL 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 677652373 186 LSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTAE 235
Cdd:PRK10771 172 VSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK 221
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
17-226 |
5.66e-26 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 101.64 E-value: 5.66e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 17 YGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEqIQRYASKEVARRIGL-LAQNATTPGD 95
Cdd:cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGL-VPWKRRKKFLRRIGVvFGQKTQLWWD 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 96 ITVQE--LVTRGRYPHQPL-FTRWRKEDADAVAsamratgITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTT 172
Cdd:cd03267 110 LPVIDsfYLLAAIYDLPPArFKKRLDELSELLD-------LEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 677652373 173 WLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQG 226
Cdd:cd03267 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
22-207 |
8.54e-26 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 100.19 E-value: 8.54e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 22 VAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQ--RYASKEVARRIGLLAQNattPGD---- 95
Cdd:TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDysRKGLLERRQRVGLVFQD---PDDqlfa 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 96 ITVQELVTRGryphqPLFTRWRKEDADA-VASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWL 174
Cdd:TIGR01166 84 ADVDQDVAFG-----PLNLGLSEAEVERrVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGL 158
|
170 180 190
....*....|....*....|....*....|...
gi 677652373 175 DISHQIDLLELLSDLnREKGYTLAAVLHDLNQA 207
Cdd:TIGR01166 159 DPAGREQMLAILRRL-RAEGMTVVISTHDVDLA 190
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
12-231 |
1.23e-25 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 103.26 E-value: 1.23e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 12 QLTLGYGSYTVakNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP------VDGHVWLDGEQIQRyaskeVA---RR 82
Cdd:COG4148 6 DFRLRRGGFTL--DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPdsgrirLGGEVLQDSARGIF-----LPphrRR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 83 IGLLAQNATTPGDITVQELVtrgRYPHQPLFTRWRKEDADAVASAMratGITSLAAQSVDTLSGGQRQRAWIAMVLAQET 162
Cdd:COG4148 79 IGYVFQEARLFPHLSVRGNL---LYGRKRAPRAERRISFDEVVELL---GIGHLLDRRPATLSGGERQRVAIGRALLSSP 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 677652373 163 SIMLLDEPTTWLDISHQIDLLELLSDLNREKG----YtlaaVLHDLNQACRYATHLIALREGNIVAQGAPKEI 231
Cdd:COG4148 153 RLLLMDEPLAALDLARKAEILPYLERLRDELDipilY----VSHSLDEVARLADHVVLLEQGRVVASGPLAEV 221
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
8-241 |
1.58e-25 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 100.31 E-value: 1.58e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARR-IGLL 86
Cdd:cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLgIGYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 87 AQNATTPGDITVQE---LVTRGRYphqplFTRW-RKEDADAVASAMratGITSLAAQSVDTLSGGQRQRAWIAMVLAQET 162
Cdd:cd03218 81 PQEASIFRKLTVEEnilAVLEIRG-----LSKKeREEKLEELLEEF---HITHLRKSKASSLSGGERRRVEIARALATNP 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 163 SIMLLDEPTTWLD-ISHQiDLLELLSDLnREKGYtlaAVL---HDLNQACRYATHLIALREGNIVAQGAPKEIVTAELIE 238
Cdd:cd03218 153 KFLLLDEPFAGVDpIAVQ-DIQKIIKIL-KDRGI---GVLitdHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANELVR 227
|
...
gi 677652373 239 KIY 241
Cdd:cd03218 228 KVY 230
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
2-222 |
2.24e-25 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 100.52 E-value: 2.24e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 2 TESVARL-RGDQLTLG-----YGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVwLDGEqiqryA 75
Cdd:PRK11247 1 MMNTARLnQGTPLLLNavskrYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAGT-----A 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 76 SKEVARR-IGLLAQNATTPGDITVQELVTRGryphqpLFTRWRkedaDAVASAMRATGITSLAAQSVDTLSGGQRQRAWI 154
Cdd:PRK11247 75 PLAEAREdTRLMFQDARLLPWKKVIDNVGLG------LKGQWR----DAALQALAAVGLADRANEWPAALSGGQKQRVAL 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 677652373 155 AMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNI 222
Cdd:PRK11247 145 ARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
19-243 |
2.38e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 101.32 E-value: 2.38e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 19 SYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASK-EVARRIGLLAQN------AT 91
Cdd:PRK13633 22 EKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLwDIRNKAGMVFQNpdnqivAT 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 92 TpgditVQELVTRGryPH----QPLFTRWRKEDAdavasaMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLL 167
Cdd:PRK13633 102 I-----VEEDVAFG--PEnlgiPPEEIRERVDES------LKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIF 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 677652373 168 DEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRyATHLIALREGNIVAQGAPKEIVT-AELIEKIyGL 243
Cdd:PRK13633 169 DEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFKeVEMMKKI-GL 243
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
24-226 |
3.25e-25 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 99.65 E-value: 3.25e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRL-----MTpvDGHVWLDGEQIQRYaskEVARRIGLLAQNATTPGDITV 98
Cdd:cd03234 24 NDVSLHVESGQVMAILGSSGSGKTTLLDAISGRvegggTT--SGQILFNGQPRKPD---QFQKCVAYVRQDDILLPGLTV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 99 QELVT-----RGRYpHQPLFTRwRKEDADavaSAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTW 173
Cdd:cd03234 99 RETLTytailRLPR-KSSDAIR-KKRVED---VLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSG 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 677652373 174 LDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQG 226
Cdd:cd03234 174 LDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
|
| LolD_lipo_ex |
TIGR02211 |
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ... |
20-209 |
5.73e-25 |
|
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 131266 [Multi-domain] Cd Length: 221 Bit Score: 98.58 E-value: 5.73e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 20 YTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVA----RRIGLLAQNATTPGD 95
Cdd:TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAklrnKKLGFIYQFHHLLPD 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 96 ITVQELVTrgryphQP-LFTRWRKEDADAVASAM-RATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTW 173
Cdd:TIGR02211 98 FTALENVA------MPlLIGKKSVKEAKERAYEMlEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGN 171
|
170 180 190
....*....|....*....|....*....|....*.
gi 677652373 174 LDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACR 209
Cdd:TIGR02211 172 LDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK 207
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
17-234 |
8.68e-25 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 99.10 E-value: 8.68e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 17 YGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQI--------QRYAS--KEVAR---RI 83
Cdd:COG4598 18 FGDLEVLKGVSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRVGGEEIrlkpdrdgELVPAdrRQLQRirtRL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 84 GLLAQNATTPGDITVQELVTRGryPHQPLftrwRKEDADAVASAMR---ATGITSLAAQSVDTLSGGQRQRAWIAMVLAQ 160
Cdd:COG4598 98 GMVFQSFNLWSHMTVLENVIEA--PVHVL----GRPKAEAIERAEAllaKVGLADKRDAYPAHLSGGQQQRAAIARALAM 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 677652373 161 ETSIMLLDEPTTWLDISHQIDLLELLSDLNREkGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTA 234
Cdd:COG4598 172 EPEVMLFDEPTSALDPELVGEVLKVMRDLAEE-GRTMLVVTHEMGFARDVSSHVVFLHQGRIEEQGPPAEVFGN 244
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1-231 |
9.39e-25 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 99.08 E-value: 9.39e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 1 MTESVarLRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRL--MTP---VDGHVWLDGEQI--QR 73
Cdd:PRK14239 1 MTEPI--LQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMndLNPevtITGSIVYNGHNIysPR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 74 YASKEVARRIGLLAQNAtTPGDITVQELVTRGryphqpLFTRWRKEDA---DAVASAMRATGI----TSLAAQSVDTLSG 146
Cdd:PRK14239 79 TDTVDLRKEIGMVFQQP-NPFPMSIYENVVYG------LRLKGIKDKQvldEAVEKSLKGASIwdevKDRLHDSALGLSG 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 147 GQRQRAWIAMVLAQETSIMLLDEPTTWLD-ISH-QIDllELLsdLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVA 224
Cdd:PRK14239 152 GQQQRVCIARVLATSPKIILLDEPTSALDpISAgKIE--ETL--LGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIE 227
|
....*..
gi 677652373 225 QGAPKEI 231
Cdd:PRK14239 228 YNDTKQM 234
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
24-226 |
9.73e-25 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 98.05 E-value: 9.73e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQNATT-PGdiTVQELV 102
Cdd:cd03245 21 DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLfYG--TLRDNI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 103 TRGRYPHqplftrwrkEDADAVASAMRAtGITSLAAQSVD-----------TLSGGQRQRAWIAMVLAQETSIMLLDEPT 171
Cdd:cd03245 99 TLGAPLA---------DDERILRAAELA-GVTDFVNKHPNgldlqigergrGLSGGQRQAVALARALLNDPPILLLDEPT 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 677652373 172 TWLDISHQIDLLELLSDLNREKgyTLAAVLHDLNqACRYATHLIALREGNIVAQG 226
Cdd:cd03245 169 SAMDMNSEERLKERLRQLLGDK--TLIIITHRPS-LLDLVDRIIVMDSGRIVADG 220
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
26-231 |
9.84e-25 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 100.96 E-value: 9.84e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 26 LNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRyASKEV-----ARRIGLLAQNATTPGDITVQE 100
Cdd:TIGR02142 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFD-SRKGIflppeKRRIGYVFQEARLFPHLSVRG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 101 LVTRGRYPHQPLFTRWRKEdadavaSAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQI 180
Cdd:TIGR02142 95 NLRYGMKRARPSERRISFE------RVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKY 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 677652373 181 DLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEI 231
Cdd:TIGR02142 169 EILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEV 219
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
12-226 |
2.33e-24 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 96.90 E-value: 2.33e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 12 QLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRyaSKEVARRIGLLAQNAT 91
Cdd:cd03268 5 DLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK--NIEALRRIGALIEAPG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 92 TPGDITVQE-LVTRGRYPhqplftRWRKEDADAVasaMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEP 170
Cdd:cd03268 83 FYPNLTAREnLRLLARLL------GIRKKRIDEV---LDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEP 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 677652373 171 TTWLDISHQIDLLELLSDLnREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQG 226
Cdd:cd03268 154 TNGLDPDGIKELRELILSL-RDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
38-231 |
2.99e-24 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 99.11 E-value: 2.99e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 38 IIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEvaRRIGLLAQNATTPGDITVQELVTRGryphqplfTRWR 117
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHL--RHINMVFQSYALFPHMTVEENVAFG--------LKMR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 118 KEDADAVAS----AMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQiDLLEL-LSDLNRE 192
Cdd:TIGR01187 71 KVPRAEIKPrvleALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLR-DQMQLeLKTIQEQ 149
|
170 180 190
....*....|....*....|....*....|....*....
gi 677652373 193 KGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEI 231
Cdd:TIGR01187 150 LGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEI 188
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
5-204 |
3.06e-24 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 101.28 E-value: 3.06e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 5 VARLRGDQLTLGY-GSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRI 83
Cdd:TIGR02868 332 KPTLELRDLSAGYpGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRV 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 84 GLLAQNATTpGDITVQELVTRGRyphqplftrwrkEDA--DAVASAMRATGITSLAAQSVD-----------TLSGGQRQ 150
Cdd:TIGR02868 412 SVCAQDAHL-FDTTVRENLRLAR------------PDAtdEELWAALERVGLADWLRALPDgldtvlgeggaRLSGGERQ 478
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 677652373 151 RAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLsdLNREKGYTLAAVLHDL 204
Cdd:TIGR02868 479 RLALARALLADAPILLLDEPTEHLDAETADELLEDL--LAALSGRTVVLITHHL 530
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
13-226 |
6.70e-24 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 95.43 E-value: 6.70e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 13 LTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQryasKEVARRIGLLAQNatt 92
Cdd:cd03269 6 VTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLD----IAARNRIGYLPEE--- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 93 pgditvqelvtRGRYPHQPL------FTRWR---KEDADA-VASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQET 162
Cdd:cd03269 79 -----------RGLYPKMKVidqlvyLAQLKglkKEEARRrIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDP 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 677652373 163 SIMLLDEPTTWLDISHQIDLLELLSDLnREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQG 226
Cdd:cd03269 148 ELLILDEPFSGLDPVNVELLKDVIREL-ARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
13-231 |
7.91e-24 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 98.25 E-value: 7.91e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 13 LTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEvaRRIGLLAQnatt 92
Cdd:PRK11432 12 ITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQ--RDICMVFQ---- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 93 pgditvqelvTRGRYPHQPL----------FTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQET 162
Cdd:PRK11432 86 ----------SYALFPHMSLgenvgyglkmLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKP 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 677652373 163 SIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEI 231
Cdd:PRK11432 156 KVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
11-241 |
8.33e-24 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 96.88 E-value: 8.33e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 11 DQLTLGY-GSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVarrIGLLAQN 89
Cdd:PRK15056 10 NDVTVTWrNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNL---VAYVPQS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 90 ATTPGD--ITVQELVTRGRYPHQPLFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLL 167
Cdd:PRK15056 87 EEVDWSfpVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILL 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 677652373 168 DEPTTWLDISHQIDLLELLSDLnREKGYTLAAVLHDLNQACRYATHLIALReGNIVAQGAPKEIVTAELIEKIY 241
Cdd:PRK15056 167 DEPFTGVDVKTEARIISLLREL-RDEGKTMLVSTHNLGSVTEFCDYTVMVK-GTVLASGPTETTFTAENLELAF 238
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
11-231 |
9.10e-24 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 98.23 E-value: 9.10e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 11 DQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEvaRRIGLLAQNA 90
Cdd:PRK10851 6 ANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD--RKVGFVFQHY 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 91 TTPGDITVQELVTRGryphQPLFTRWRKEDADA----VASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIML 166
Cdd:PRK10851 84 ALFRHMTVFDNIAFG----LTVLPRRERPNAAAikakVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 677652373 167 LDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEI 231
Cdd:PRK10851 160 LDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
24-238 |
1.64e-23 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 98.99 E-value: 1.64e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMtPVDGHVWLDGEQIQRYASKE---VARRIGLLAQnattpgD----- 95
Cdd:COG4172 303 DGVSLTLRRGETLGLVGESGSGKSTLGLALLRLI-PSEGEIRFDGQDLDGLSRRAlrpLRRRMQVVFQ------Dpfgsl 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 96 ---ITVQELVTRGRYPHQPLFTRwrKEDADAVASAMRATGitsLAAQSVD----TLSGGQRQRAWIAMVLAQETSIMLLD 168
Cdd:COG4172 376 sprMTVGQIIAEGLRVHGPGLSA--AERRARVAEALEEVG---LDPAARHryphEFSGGQRQRIAIARALILEPKLLVLD 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 169 EPTTWLDISHQIDLLELLSDLNREKGytLAAVL--HDLnQACRYATH-LIALREGNIVAQG-------APKEIVTAELIE 238
Cdd:COG4172 451 EPTSALDVSVQAQILDLLRDLQREHG--LAYLFisHDL-AVVRALAHrVMVMKDGKVVEQGpteqvfdAPQHPYTRALLA 527
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1-241 |
1.77e-23 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 95.44 E-value: 1.77e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 1 MTESVARLRGdqLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVA 80
Cdd:PRK11300 1 MSQPLLSVSG--LMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 81 RRiGLLA--QNATTPGDITVQE--LVTRGRYPHQPLFT------RWRKEDADAVASA---MRATGITSLAAQSVDTLSGG 147
Cdd:PRK11300 79 RM-GVVRtfQHVRLFREMTVIEnlLVAQHQQLKTGLFSgllktpAFRRAESEALDRAatwLERVGLLEHANRQAGNLAYG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 148 QRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGA 227
Cdd:PRK11300 158 QQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGT 237
|
250
....*....|....
gi 677652373 228 PKEIVTAELIEKIY 241
Cdd:PRK11300 238 PEEIRNNPDVIKAY 251
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
22-230 |
2.09e-23 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 94.91 E-value: 2.09e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 22 VAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQNATTpGDITVQEL 101
Cdd:cd03249 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVL-FDGTIAEN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 102 VTRGRYPhqplftRWRKEDADAVASAMRATGITSLaAQSVDT--------LSGGQRQRAWIAMVLAQETSIMLLDEPTTW 173
Cdd:cd03249 97 IRYGKPD------ATDEEVEEAAKKANIHDFIMSL-PDGYDTlvgergsqLSGGQKQRIAIARALLRNPKILLLDEATSA 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 677652373 174 LDISHQIDLLELLSdlNREKGYTLAAVLHDLNqACRYATHLIALREGNIVAQGAPKE 230
Cdd:cd03249 170 LDAESEKLVQEALD--RAMKGRTTIVIAHRLS-TIRNADLIAVLQNGQVVEQGTHDE 223
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
17-231 |
2.50e-23 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 95.42 E-value: 2.50e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 17 YGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQ---------RYASKEVAR----RI 83
Cdd:PRK10619 15 YGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINlvrdkdgqlKVADKNQLRllrtRL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 84 GLLAQNATTPGDITVQELVTRGryPHQPLFTRwRKEDADAVASAMRATGITSLAAQSVDT-LSGGQRQRAWIAMVLAQET 162
Cdd:PRK10619 95 TMVFQHFNLWSHMTVLENVMEA--PIQVLGLS-KQEARERAVKYLAKVGIDERAQGKYPVhLSGGQQQRVSIARALAMEP 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 677652373 163 SIMLLDEPTTWLDISHQIDLLELLSDLnREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEI 231
Cdd:PRK10619 172 EVLLFDEPTSALDPELVGEVLRIMQQL-AEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQL 239
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
18-237 |
2.69e-23 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 96.69 E-value: 2.69e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 18 GSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEV--ARR-IG-------LLA 87
Cdd:COG1135 16 GPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSERELraARRkIGmifqhfnLLS 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 88 QNattpgdiTVQELVTRgryphqPL-FTRWRKEDADA-VASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIM 165
Cdd:COG1135 96 SR-------TVAENVAL------PLeIAGVPKAEIRKrVAELLELVGLSDKADAYPSQLSGGQKQRVGIARALANNPKVL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 166 LLDEPTTWLD--ISHQIdlLELLSDLNREKGYTLAAVLHDLN---QACryatHLIA-LREGNIVAQG-------APKEIV 232
Cdd:COG1135 163 LCDEATSALDpeTTRSI--LDLLKDINRELGLTIVLITHEMDvvrRIC----DRVAvLENGRIVEQGpvldvfaNPQSEL 236
|
....*
gi 677652373 233 TAELI 237
Cdd:COG1135 237 TRRFL 241
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
22-225 |
2.96e-23 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 94.50 E-value: 2.96e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 22 VAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVA----RRIGLLAQNATTPGDIT 97
Cdd:PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAelrnQKLGFIYQFHHLLPDFT 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 98 VQELVTrgryphQPLFT--RWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLD 175
Cdd:PRK11629 104 ALENVA------MPLLIgkKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLD 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 677652373 176 ISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLiALREGNIVAQ 225
Cdd:PRK11629 178 ARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQL-EMRDGRLTAE 226
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
8-223 |
6.14e-23 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 97.44 E-value: 6.14e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLdGEQIqryaskevarRIGLLA 87
Cdd:COG0488 316 LELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKL-GETV----------KIGYFD 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 88 QNATT-PGDITVQELVTRGRYPHQP----------LFTRwrkEDADavasamratgitslaaQSVDTLSGGQRQRAWIAM 156
Cdd:COG0488 385 QHQEElDPDKTVLDELRDGAPGGTEqevrgylgrfLFSG---DDAF----------------KPVGVLSGGEKARLALAK 445
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 677652373 157 VLAQETSIMLLDEPTTWLDishqIDLLELLSD-LNREKGyTLAAVLHDlnqacRY-----ATHLIALREGNIV 223
Cdd:COG0488 446 LLLSPPNVLLLDEPTNHLD----IETLEALEEaLDDFPG-TVLLVSHD-----RYfldrvATRILEFEDGGVR 508
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
24-250 |
6.56e-23 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 94.38 E-value: 6.56e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQN--ATTPGDITVQE- 100
Cdd:COG1101 23 DGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYKRAKYIGRVFQDpmMGTAPSMTIEEn 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 101 -LVTRGRypHQPLFTRWrkedadAVASAMRATGITSLAA----------QSVDTLSGGQRQrAwIAMVLA--QETSIMLL 167
Cdd:COG1101 103 lALAYRR--GKRRGLRR------GLTKKRRELFRELLATlglglenrldTKVGLLSGGQRQ-A-LSLLMAtlTKPKLLLL 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 168 DEPTTWLD--ISHQIdlLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIV--AQGAPKEIVTAE-LIEKIYG 242
Cdd:COG1101 173 DEHTAALDpkTAALV--LELTEKIVEENNLTTLMVTHNMEQALDYGNRLIMMHEGRIIldVSGEEKKKLTVEdLLELFEE 250
|
....*...
gi 677652373 243 LRCMIIDD 250
Cdd:COG1101 251 IRGEELAD 258
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
12-222 |
6.74e-23 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 93.24 E-value: 6.74e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 12 QLTLGYGSYTVA-KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVA---RRIGLLA 87
Cdd:cd03292 5 NVTKTYPNGTAAlDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPylrRKIGVVF 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 88 QNATTPGDITVQE-----LVTRGRYPHQplftrWRKEDADAVASAMRATGITSLAAQsvdtLSGGQRQRAWIAMVLAQET 162
Cdd:cd03292 85 QDFRLLPDRNVYEnvafaLEVTGVPPRE-----IRKRVPAALELVGLSHKHRALPAE----LSGGEQQRVAIARAIVNSP 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 163 SIMLLDEPTTWLDISHQIDLLELLSDLNReKGYTLAAVLHDLNQACRYATHLIALREGNI 222
Cdd:cd03292 156 TILIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
8-236 |
7.21e-23 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 93.36 E-value: 7.21e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARR-IGLL 86
Cdd:TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAgIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 87 AQNATTPGDITVQE-----LVTRGRyphqplftRWRKEDADA-----VASAMRAT--GitslaaqsvdTLSGGQRQRAWI 154
Cdd:TIGR03410 81 PQGREIFPRLTVEEnlltgLAALPR--------RSRKIPDEIyelfpVLKEMLGRrgG----------DLSGGQQQQLAI 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 155 AMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTA 234
Cdd:TIGR03410 143 ARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELDED 222
|
..
gi 677652373 235 EL 236
Cdd:TIGR03410 223 KV 224
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
18-238 |
7.25e-23 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 97.08 E-value: 7.25e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 18 GSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMtPVDGHVWLDGEQIQRYASKE---VARRIGLLAQ--NATT 92
Cdd:PRK15134 297 DHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQllpVRHRIQVVFQdpNSSL 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 93 PGDITVQELVTRGRYPHQPLFTRWRKEDAdaVASAMRATGITSLAAQSVDT-LSGGQRQRAWIAMVLAQETSIMLLDEPT 171
Cdd:PRK15134 376 NPRLNVLQIIEEGLRVHQPTLSAAQREQQ--VIAVMEEVGLDPETRHRYPAeFSGGQRQRIAIARALILKPSLIILDEPT 453
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 677652373 172 TWLDISHQIDLLELLSDLNREKGYTLAAVLHDLnQACRYATH-LIALREGNIVAQG-------APKEIVTAELIE 238
Cdd:PRK15134 454 SSLDKTVQAQILALLKSLQQKHQLAYLFISHDL-HVVRALCHqVIVLRQGEVVEQGdcervfaAPQQEYTRQLLA 527
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
8-226 |
8.48e-23 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 91.99 E-value: 8.48e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYG--SYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYaSKEVARRIGL 85
Cdd:cd03247 1 LSINNVSFSYPeqEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 86 LAQNattpgditvqelvtrgryPHqpLFTrwrkedadavasamrATGITSLAAQsvdtLSGGQRQRAWIAMVLAQETSIM 165
Cdd:cd03247 80 LNQR------------------PY--LFD---------------TTLRNNLGRR----FSGGERQRLALARILLQDAPIV 120
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 677652373 166 LLDEPTTWLDISHQIDLLELLSDLNREKgyTLAAVLHDLnQACRYATHLIALREGNIVAQG 226
Cdd:cd03247 121 LLDEPTVGLDPITERQLLSLIFEVLKDK--TLIWITHHL-TGIEHMDKILFLENGKIIMQG 178
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
2-231 |
8.62e-23 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 94.06 E-value: 8.62e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 2 TESVARLRGdqLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQI---QRYASKE 78
Cdd:PRK11831 4 VANLVDMRG--VSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIpamSRSRLYT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 79 VARRIGLLAQNATTPGDITVQELVT-----RGRYPHQPLFTrwrkedadAVASAMRATGITSLAAQSVDTLSGGQRQRAW 153
Cdd:PRK11831 82 VRKRMSMLFQSGALFTDMNVFDNVAyplreHTQLPAPLLHS--------TVMMKLEAVGLRGAAKLMPSELSGGMARRAA 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 677652373 154 IAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEI 231
Cdd:PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
22-222 |
9.39e-23 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 91.51 E-value: 9.39e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 22 VAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQNATtpgditvqel 101
Cdd:cd03246 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDE---------- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 102 vtrgryphqpLFtrwrkedADAVASAMratgitslaaqsvdtLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQID 181
Cdd:cd03246 87 ----------LF-------SGSIAENI---------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERA 134
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 677652373 182 LLELLSDLnREKGYTLAAVLHD---LNQACRyathLIALREGNI 222
Cdd:cd03246 135 LNQAIAAL-KAAGATRIVIAHRpetLASADR----ILVLEDGRV 173
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
25-231 |
1.45e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 94.03 E-value: 1.45e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 25 NLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLdGEQIQRYASKE-----VARRIGLLAQnatTPGDITVQ 99
Cdd:PRK13643 24 DIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTV-GDIVVSSTSKQkeikpVRKKVGVVFQ---FPESQLFE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 100 ELVTRGrYPHQPLFTRWRKEDADAVAS-AMRATGIT-SLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDIS 177
Cdd:PRK13643 100 ETVLKD-VAFGPQNFGIPKEKAEKIAAeKLEMVGLAdEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 677652373 178 HQIDLLELLSDLNrEKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEI 231
Cdd:PRK13643 179 ARIEMMQLFESIH-QSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
22-233 |
1.92e-22 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 96.33 E-value: 1.92e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 22 VAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQNATTPGDiTVQEL 101
Cdd:TIGR00958 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVREN 574
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 102 VTRGryphqplFTRWRKEDADAVASAMRATGITSLAAQSVDT--------LSGGQRQRAWIAMVLAQETSIMLLDEPTTW 173
Cdd:TIGR00958 575 IAYG-------LTDTPDEEIMAAAKAANAHDFIMEFPNGYDTevgekgsqLSGGQKQRIAIARALVRKPRVLILDEATSA 647
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 174 LDISHQidllELLSDLNREKGYTLAAVLHDLnQACRYATHLIALREGNIVAQGAPKEIVT 233
Cdd:TIGR00958 648 LDAECE----QLLQESRSRASRTVLLIAHRL-STVERADQILVLKKGSVVEMGTHKQLME 702
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
8-231 |
1.97e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 93.23 E-value: 1.97e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSYTVAKNLN---VSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIG 84
Cdd:PRK13642 5 LEVENLVFKYEKESDVNQLNgvsFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 85 LLAQNATTPG-DITVQELVTRGR----YPHQPLFTRwrkedadaVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLA 159
Cdd:PRK13642 85 MVFQNPDNQFvGATVEDDVAFGMenqgIPREEMIKR--------VDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 677652373 160 QETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRyATHLIALREGNIVAQGAPKEI 231
Cdd:PRK13642 157 LRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSEL 227
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
16-234 |
2.37e-22 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 95.52 E-value: 2.37e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 16 GYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKS----TLLRTLSRLMTPVDGHVWLDGEQIQRyASKEVARRI-Gllaqna 90
Cdd:COG4172 19 GGGTVEAVKGVSFDIAAGETLALVGESGSGKSvtalSILRLLPDPAAHPSGSILFDGQDLLG-LSERELRRIrG------ 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 91 ttpGDITV--QE-------LVTRGR------YPHQPLftrwRKEDADA-VASAMRATGITSlAAQSVDT----LSGGQRQ 150
Cdd:COG4172 92 ---NRIAMifQEpmtslnpLHTIGKqiaevlRLHRGL----SGAAARArALELLERVGIPD-PERRLDAyphqLSGGQRQ 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 151 RAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGytlAAVL---HDLNQACRYATHLIALREGNIVAQGA 227
Cdd:COG4172 164 RVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELG---MALLlitHDLGVVRRFADRVAVMRQGEIVEQGP 240
|
....*..
gi 677652373 228 PKEIVTA 234
Cdd:COG4172 241 TAELFAA 247
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
11-232 |
2.71e-22 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 91.91 E-value: 2.71e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 11 DQLTLGYG-SYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQ- 88
Cdd:cd03253 4 ENVTFAYDpGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQd 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 89 ----NATTPGDItvqelvtrgRYphqplfTRWRKEDADAVASAMRA---TGITSLaAQSVDT--------LSGGQRQRAW 153
Cdd:cd03253 84 tvlfNDTIGYNI---------RY------GRPDATDEEVIEAAKAAqihDKIMRF-PDGYDTivgerglkLSGGEKQRVA 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 677652373 154 IAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNreKGYTLAAVLHDLNQACRyATHLIALREGNIVAQGAPKEIV 232
Cdd:cd03253 148 IARAILKNPPILLLDEATSALDTHTEREIQAALRDVS--KGRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEELL 223
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
21-202 |
2.82e-22 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 90.69 E-value: 2.82e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 21 TVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLS-RLMTP-VDGHVWLDGEQIQRYASKevaRRIGLLAQNATTPGDITV 98
Cdd:cd03213 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAgRRTGLgVSGEVLINGRPLDKRSFR---KIIGYVPQDDILHPTLTV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 99 QElvtrgryphqplftrwrkedADAVASAMRAtgitslaaqsvdtLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISH 178
Cdd:cd03213 100 RE--------------------TLMFAAKLRG-------------LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSS 146
|
170 180
....*....|....*....|....
gi 677652373 179 QIDLLELLSDLnREKGYTLAAVLH 202
Cdd:cd03213 147 ALQVMSLLRRL-ADTGRTIICSIH 169
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
20-231 |
3.21e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 92.92 E-value: 3.21e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 20 YTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYAS----KEVARRIGLLAQNATTP-- 93
Cdd:PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKdkyiRPVRKRIGMVFQFPESQlf 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 94 GDITVQELVTRGRYPHQPLftrwRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTW 173
Cdd:PRK13646 100 EDTVEREIIFGPKNFKMNL----DEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAG 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 677652373 174 LDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEI 231
Cdd:PRK13646 176 LDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
1-228 |
3.91e-22 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 91.34 E-value: 3.91e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 1 MTESVARLRGDQLTL--GYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKE 78
Cdd:COG4181 4 SSAPIIELRGLTKTVgtGAGELTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFALDEDA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 79 VAR----RIGLLAQNATTPGDITVQELVTrgryphQPLFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWI 154
Cdd:COG4181 84 RARlrarHVGFVFQSFQLLPTLTALENVM------LPLELAGRRDARARARALLERVGLGHRLDHYPAQLSGGEQQRVAL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 677652373 155 AMVLAQETSIMLLDEPTTWLD--ISHQIdlLELLSDLNREKGYTLAAVLHDLNQACRyATHLIALREGNIVAQGAP 228
Cdd:COG4181 158 ARAFATEPAILFADEPTGNLDaaTGEQI--IDLLFELNRERGTTLVLVTHDPALAAR-CDRVLRLRAGRLVEDTAA 230
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
21-236 |
4.39e-22 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 92.18 E-value: 4.39e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 21 TVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGE---QIQRYASKEVARRIGLLAQNAttPGDIT 97
Cdd:TIGR02769 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQdlyQLDRKQRRAFRRDVQLVFQDS--PSAVN 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 98 VQElvTRGRYPHQPL--FTRWRKEDADAVASAM-RATGITSLAAQSV-DTLSGGQRQRAWIAMVLAQETSIMLLDEPTTW 173
Cdd:TIGR02769 103 PRM--TVRQIIGEPLrhLTSLDESEQKARIAELlDMVGLRSEDADKLpRQLSGGQLQRINIARALAVKPKLIVLDEAVSN 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 677652373 174 LDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVaqgapKEIVTAEL 236
Cdd:TIGR02769 181 LDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV-----EECDVAQL 238
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
13-259 |
4.84e-22 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 93.75 E-value: 4.84e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 13 LTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEvaRRIGLLAQNATT 92
Cdd:PRK11607 25 LTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ--RPINMMFQSYAL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 93 PGDITVQELVTRG----RYPhqplftrwRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLD 168
Cdd:PRK11607 103 FPHMTVEQNIAFGlkqdKLP--------KAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLD 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 169 EPTTWLDISHQIDL-LELLSDLNReKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEI-------VTAELIEKI 240
Cdd:PRK11607 175 EPMGALDKKLRDRMqLEVVDILER-VGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIyehpttrYSAEFIGSV 253
|
250 260
....*....|....*....|....*...
gi 677652373 241 YGLRC---------MIIDDPVAGTPLVV 259
Cdd:PRK11607 254 NVFEGvlkerqedgLVIDSPGLVHPLKV 281
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
21-238 |
5.45e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 92.46 E-value: 5.45e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 21 TVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHV------WLDGEQIQRYAS------------------ 76
Cdd:PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIewifkdEKNKKKTKEKEKvleklviqktrfkkikki 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 77 KEVARRIGLLAQNATTP-GDITVQELVTRGryphqPLFTRWRKEDADAVASAM-RATGI-TSLAAQSVDTLSGGQRQRAW 153
Cdd:PRK13651 101 KEIRRRVGVVFQFAEYQlFEQTIEKDIIFG-----PVSMGVSKEEAKKRAAKYiELVGLdESYLQRSPFELSGGQKRRVA 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 154 IAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNrEKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVT 233
Cdd:PRK13651 176 LAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLN-KQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILS 254
|
....*..
gi 677652373 234 AE--LIE 238
Cdd:PRK13651 255 DNkfLIE 261
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
7-223 |
7.12e-22 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 91.67 E-value: 7.12e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 7 RLRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGE---QIQRYASKEVARRI 83
Cdd:PRK10419 12 HYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEplaKLNRAQRKAFRRDI 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 84 GLLAQNAttPGDITVQELVtrGRYPHQPL--FTRWRKEDADAVASAM-RATGIT-SLAAQSVDTLSGGQRQRAWIAMVLA 159
Cdd:PRK10419 92 QMVFQDS--ISAVNPRKTV--REIIREPLrhLLSLDKAERLARASEMlRAVDLDdSVLDKRPPQLSGGQLQRVCLARALA 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 677652373 160 QETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIV 223
Cdd:PRK10419 168 VEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIV 231
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
1-206 |
7.70e-22 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 90.54 E-value: 7.70e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 1 MTESVARLRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVA 80
Cdd:PRK10247 1 MQENSPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 81 RRIGLLAQNATTPGDITVQELVtrgrYPHQplfTRWRKEDADAVASAMRATGI-TSLAAQSVDTLSGGQRQRAWIAMVLA 159
Cdd:PRK10247 81 QQVSYCAQTPTLFGDTVYDNLI----FPWQ---IRNQQPDPAIFLDDLERFALpDTILTKNIAELSGGEKQRISLIRNLQ 153
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 677652373 160 QETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQ 206
Cdd:PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE 200
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
7-217 |
9.13e-22 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 93.89 E-value: 9.13e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 7 RLRGDQLTLGY-GSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGL 85
Cdd:TIGR02857 321 SLEFSGVSVAYpGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAW 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 86 LAQNATTPGDiTVQELVTRGRyphqplftrwRKEDADAVASAMRATGITSLAA---QSVDT--------LSGGQRQRAWI 154
Cdd:TIGR02857 401 VPQHPFLFAG-TIAENIRLAR----------PDASDAEIREALERAGLDEFVAalpQGLDTpigeggagLSGGQAQRLAL 469
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 677652373 155 AMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNRekGYTLAAVLHDLNQACRyATHLIAL 217
Cdd:TIGR02857 470 ARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ--GRTVLLVTHRLALAAL-ADRIVVL 529
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
12-231 |
1.21e-21 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 90.58 E-value: 1.21e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 12 QLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQI--------QRYASKEVARRI 83
Cdd:PRK11264 8 NLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIdtarslsqQKGLIRQLRQHV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 84 GLLAQNATTPGDITVQELVTRGryphqPLFTRWR-KEDADAVASAMRA-TGITSLAAQSVDTLSGGQRQRAWIAMVLAQE 161
Cdd:PRK11264 88 GFVFQNFNLFPHRTVLENIIEG-----PVIVKGEpKEEATARARELLAkVGLAGKETSYPRRLSGGQQQRVAIARALAMR 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 162 TSIMLLDEPTTWLDISHQIDLLELLSDLNREKgYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEI 231
Cdd:PRK11264 163 PEVILFDEPTSALDPELVGEVLNTIRQLAQEK-RTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKAL 231
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
24-239 |
1.39e-21 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 93.69 E-value: 1.39e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQNATtpgditvqelvt 103
Cdd:COG1132 357 KDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDLTLESLRRQIGVVPQDTF------------ 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 104 rgryphqpLFT-------RWRKEDA--DAVASAMRATG----ITSLaAQSVDT--------LSGGQRQRAWIAMVLAQET 162
Cdd:COG1132 425 --------LFSgtireniRYGRPDAtdEEVEEAAKAAQahefIEAL-PDGYDTvvgergvnLSGGQRQRIAIARALLKDP 495
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 677652373 163 SIMLLDEPTTWLDISHQIDLLELLSDLNREKgyTLAAVLHDLNQAcRYATHLIALREGNIVAQGAPkeivtAELIEK 239
Cdd:COG1132 496 PILILDEATSALDTETEALIQEALERLMKGR--TTIVIAHRLSTI-RNADRILVLDDGRIVEQGTH-----EELLAR 564
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
22-230 |
1.45e-21 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 89.98 E-value: 1.45e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 22 VAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQNATTPGDiTVQEL 101
Cdd:cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIMEN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 102 VTRGRyphqplfTRWRKEDADAVASAMRAT--------GITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTW 173
Cdd:cd03254 97 IRLGR-------PNATDEEVIEAAKEAGAHdfimklpnGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSN 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 677652373 174 LDISHQIDLLELLSDLNreKGYTLAAVLHDLNqACRYATHLIALREGNIVAQGAPKE 230
Cdd:cd03254 170 IDTETEKLIQEALEKLM--KGRTSIIIAHRLS-TIKNADKILVLDDGKIIEEGTHDE 223
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
17-226 |
2.14e-21 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 89.69 E-value: 2.14e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 17 YGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQI---QRYASKEVA---RRIGLLAQNA 90
Cdd:PRK11124 12 YGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFdfsKTPSDKAIRelrRNVGMVFQQY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 91 TTPGDITVQELVTRGRYPHQPLFTRWRKEDADAVASAMRatgITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEP 170
Cdd:PRK11124 92 NLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLR---LKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEP 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 677652373 171 TTWLD--ISHQI-DLLELLSdlnrEKGYTLAAVLHDLNQACRYATHLIALREGNIVAQG 226
Cdd:PRK11124 169 TAALDpeITAQIvSIIRELA----ETGITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
8-233 |
2.16e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 90.43 E-value: 2.16e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSYTVA-KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYAS-KEVARRIGL 85
Cdd:PRK13644 2 IRLENVSYSYPDGTPAlENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKlQGIRKLVGI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 86 LAQNATTP--GDiTVQELVTRGryPHQ----PLFTRWRkedadaVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLA 159
Cdd:PRK13644 82 VFQNPETQfvGR-TVEEDLAFG--PENlclpPIEIRKR------VDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILT 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 677652373 160 QETSIMLLDEPTTWLDISHQIDLLELLSDLNrEKGYTLAAVLHDLNQaCRYATHLIALREGNIVAQGAPKEIVT 233
Cdd:PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLH-EKGKTIVYITHNLEE-LHDADRIIVMDRGKIVLEGEPENVLS 224
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
6-241 |
2.59e-21 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 89.32 E-value: 2.59e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 6 ARLRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARR-IG 84
Cdd:COG1137 2 MTLEAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLPMHKRARLgIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 85 LLAQNATTPGDITVQE-----LVTRGRYPHQplftrwRKEDADAVasaMRATGITSLAAQSVDTLSGGQRQRAWIAMVLA 159
Cdd:COG1137 82 YLPQEASIFRKLTVEDnilavLELRKLSKKE------REERLEEL---LEEFGITHLRKSKAYSLSGGERRRVEIARALA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 160 QETSIMLLDEPTTWLD-IShQIDLLELLSDLnREKGY-----------TL-----AAVLHdlnqacryathlialrEGNI 222
Cdd:COG1137 153 TNPKFILLDEPFAGVDpIA-VADIQKIIRHL-KERGIgvlitdhnvreTLgicdrAYIIS----------------EGKV 214
|
250
....*....|....*....
gi 677652373 223 VAQGAPKEIVTAELIEKIY 241
Cdd:COG1137 215 LAEGTPEEILNNPLVRKVY 233
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
17-225 |
2.74e-21 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 87.48 E-value: 2.74e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 17 YGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEvARRIGLlaqnattpgdi 96
Cdd:cd03216 10 FGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRD-ARRAGI----------- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 97 tvqELVtrgrypHQplftrwrkedadavasamratgitslaaqsvdtLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDI 176
Cdd:cd03216 78 ---AMV------YQ---------------------------------LSVGERQMVEIARALARNARLLILDEPTAALTP 115
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 677652373 177 SHQIDLLELLSDLnREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQ 225
Cdd:cd03216 116 AEVERLFKVIRRL-RAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
13-242 |
2.82e-21 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 90.16 E-value: 2.82e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 13 LTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGH-----VWLDGEQIQRYASK-EVARRIGLL 86
Cdd:PRK14271 27 LTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYrysgdVLLGGRSIFNYRDVlEFRRRVGML 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 87 AQNAtTPGDITVQELVTRGRYPHQPLFtrwRKEDADAVASAMRATG----ITSLAAQSVDTLSGGQRQRAWIAMVLAQET 162
Cdd:PRK14271 107 FQRP-NPFPMSIMDNVLAGVRAHKLVP---RKEFRGVAQARLTEVGlwdaVKDRLSDSPFRLSGGQQQLLCLARTLAVNP 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 163 SIMLLDEPTTWLDISHQIDLLELLSDLNREkgYTLAAVLHDLNQACRYATHLIALREGNIVAQG-------APKEIVTAE 235
Cdd:PRK14271 183 EVLLLDEPTSALDPTTTEKIEEFIRSLADR--LTVIIVTHNLAQAARISDRAALFFDGRLVEEGpteqlfsSPKHAETAR 260
|
....*..
gi 677652373 236 LIEKIYG 242
Cdd:PRK14271 261 YVAGLSG 267
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
11-231 |
2.90e-21 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 90.55 E-value: 2.90e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 11 DQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRyaskEVARRIGLLaqna 90
Cdd:COG4152 5 KGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDP----EDRRRIGYL---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 91 ttPgditvqElvTRGRYPHQPL------FTRWR---KEDADAVASA-MRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQ 160
Cdd:COG4152 77 --P------E--ERGLYPKMKVgeqlvyLARLKglsKAEAKRRADEwLERLGLGDRANKKVEELSKGNQQKVQLIAALLH 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 677652373 161 ETSIMLLDEPTTWLD-ISHQIdLLELLSDLnREKGytlAAVL---HDLNQACRYATHLIALREGNIVAQGAPKEI 231
Cdd:COG4152 147 DPELLILDEPFSGLDpVNVEL-LKDVIREL-AAKG---TTVIfssHQMELVEELCDRIVIINKGRKVLSGSVDEI 216
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
6-225 |
5.05e-21 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 89.15 E-value: 5.05e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 6 ARLRGDQLTLGYGSY----TVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQryasKEVAR 81
Cdd:COG4525 2 SMLTVRHVSVRYPGGgqpqPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVT----GPGAD 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 82 RiGLLAQN-ATTPGdITVQELVT-----RGRYPHQplftrwRKEDADAVasaMRATGITSLAAQSVDTLSGGQRQRAWIA 155
Cdd:COG4525 78 R-GVVFQKdALLPW-LNVLDNVAfglrlRGVPKAE------RRARAEEL---LALVGLADFARRRIWQLSGGMRQRVGIA 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 677652373 156 MVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIAL--REGNIVAQ 225
Cdd:COG4525 147 RALAADPRFLLMDEPFGALDALTREQMQELLLDVWQRTGKGVFLITHSVEEALFLATRLVVMspGPGRIVER 218
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
17-226 |
5.89e-21 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 88.53 E-value: 5.89e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 17 YGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQ------IQRYASKEVARRIGLLAQNA 90
Cdd:COG4161 12 YGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHQfdfsqkPSEKAIRLLRQKVGMVFQQY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 91 TTPGDITVQELVTRGryPHQPLftRWRKEDADAVASAMRAT-GITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDE 169
Cdd:COG4161 92 NLWPHLTVMENLIEA--PCKVL--GLSKEQAREKAMKLLARlRLTDKADRFPLHLSGGQQQRVAIARALMMEPQVLLFDE 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 677652373 170 PTTWLD--ISHQIdlLELLSDLNrEKGYTLAAVLHDLNQACRYATHLIALREGNIVAQG 226
Cdd:COG4161 168 PTAALDpeITAQV--VEIIRELS-QTGITQVIVTHEVEFARKVASQVVYMEKGRIIEQG 223
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
22-235 |
6.82e-21 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 88.06 E-value: 6.82e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 22 VAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQNATTPGDiTVQEL 101
Cdd:cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFND-TVAEN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 102 VTRGRyphqPLFTRWRKEDADAVASAMRAtgITSLaAQSVDT--------LSGGQRQRAWIAMVLAQETSIMLLDEPTTW 173
Cdd:cd03251 96 IAYGR----PGATREEVEEAARAANAHEF--IMEL-PEGYDTvigergvkLSGGQRQRIAIARALLKDPPILILDEATSA 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 677652373 174 LDISHQIDLLELLSDLnrEKGYTLAAVLHDLNqACRYATHLIALREGNIVAQGAPKEIVTAE 235
Cdd:cd03251 169 LDTESERLVQAALERL--MKNRTTFVIAHRLS-TIENADRIVVLEDGKIVERGTHEELLAQG 227
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
17-231 |
6.85e-21 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 90.47 E-value: 6.85e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 17 YGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEvaRRIGLLAQnattpgdi 96
Cdd:PRK11000 13 YGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE--RGVGMVFQ-------- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 97 tvqelvTRGRYPHQPLF---------TRWRKEDADA-VASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIML 166
Cdd:PRK11000 83 ------SYALYPHLSVAenmsfglklAGAKKEEINQrVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 677652373 167 LDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEI 231
Cdd:PRK11000 157 LDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
17-264 |
7.06e-21 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 89.89 E-value: 7.06e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 17 YGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYAsKEVARRIGLLAQNATTPGDI 96
Cdd:PRK13536 51 YGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIGVVPQFDNLDLEF 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 97 TVQE-LVTRGRYphqplFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLD 175
Cdd:PRK13536 130 TVREnLLVFGRY-----FGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLD 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 176 ISHQIDLLELLSDLnREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAP----KEIVTAELIEkIYGlrcmiiDDP 251
Cdd:PRK13536 205 PHARHLIWERLRSL-LARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPhaliDEHIGCQVIE-IYG------GDP 276
|
250
....*....|...
gi 677652373 252 VAGTPLVVPLGRR 264
Cdd:PRK13536 277 HELSSLVKPYARR 289
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
24-220 |
7.54e-21 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 87.91 E-value: 7.54e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVarrigLLAQNATTPGDITVQE--- 100
Cdd:TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM-----VVFQNYSLLPWLTVREnia 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 101 LVTRGRYPHQPlftrwRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQI 180
Cdd:TIGR01184 77 LAVDRVLPDLS-----KSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 677652373 181 DLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREG 220
Cdd:TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
24-232 |
1.05e-20 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 90.48 E-value: 1.05e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVA----RRIGLLAQNATTPGDITVQ 99
Cdd:PRK10070 45 KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELRevrrKKIAMVFQSFALMPHMTVL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 100 ELVTRGryphQPLFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQ 179
Cdd:PRK10070 125 DNTAFG----MELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIR 200
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 677652373 180 IDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIV 232
Cdd:PRK10070 201 TEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
22-222 |
1.09e-20 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 87.53 E-value: 1.09e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 22 VAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQNATTPGDiTVQEL 101
Cdd:cd03248 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFAR-SLQDN 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 102 VTRGrYPHQPLftrwrkEDADAVASAMRATGITSLAAQSVDT--------LSGGQRQRAWIAMVLAQETSIMLLDEPTTW 173
Cdd:cd03248 108 IAYG-LQSCSF------ECVKEAAQKAHAHSFISELASGYDTevgekgsqLSGGQKQRVAIARALIRNPQVLILDEATSA 180
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 677652373 174 LDISHQIDLLELLSDLNREKGYTLAAvlHDLNQACRyATHLIALREGNI 222
Cdd:cd03248 181 LDAESEQQVQQALYDWPERRTVLVIA--HRLSTVER-ADQILVLDGGRI 226
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
19-240 |
1.19e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 88.53 E-value: 1.19e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 19 SYTVAK----------NLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQI-----QRYASKEVARRI 83
Cdd:PRK13645 13 SYTYAKktpfefkalnNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIpanlkKIKEVKRLRKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 84 GLLAQnatTPGDITVQELVTRGrYPHQPLFTRWRKEDA-DAVASAMRATGI-TSLAAQSVDTLSGGQRQRAWIAMVLAQE 161
Cdd:PRK13645 93 GLVFQ---FPEYQLFQETIEKD-IAFGPVNLGENKQEAyKKVPELLKLVQLpEDYVKRSPFELSGGQKRRVALAGIIAMD 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 162 TSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVT-AELIEKI 240
Cdd:PRK13645 169 GNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSnQELLTKI 248
|
|
| NHLM_micro_ABC2 |
TIGR03797 |
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family ... |
7-235 |
1.32e-20 |
|
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]
Pssm-ID: 274789 [Multi-domain] Cd Length: 686 Bit Score: 90.79 E-value: 1.32e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 7 RLRG----DQLTLGYG--SYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVA 80
Cdd:TIGR03797 447 KLSGaievDRVTFRYRpdGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVR 526
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 81 RRIGLLAQNAT-TPGDItVQELVTRGRYPHqplftrwrkEDADAVAS---------AMrATGITSLAAQSVDTLSGGQRQ 150
Cdd:TIGR03797 527 RQLGVVLQNGRlMSGSI-FENIAGGAPLTL---------DEAWEAARmaglaedirAM-PMGMHTVISEGGGTLSGGQRQ 595
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 151 RAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNrekgYTLAAVLHDLNqACRYATHLIALREGNIVAQGAPKE 230
Cdd:TIGR03797 596 RLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLK----VTRIVIAHRLS-TIRNADRIYVLDAGRVVQQGTYDE 670
|
....*
gi 677652373 231 IVTAE 235
Cdd:TIGR03797 671 LMARE 675
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
24-226 |
1.56e-20 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 87.04 E-value: 1.56e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRyASKEVARRIGLLAQNATTPGDITVQE-LV 102
Cdd:cd03266 22 DGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRLGFVSDSTGLYDRLTAREnLE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 103 TRGRyphqpLFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDL 182
Cdd:cd03266 101 YFAG-----LYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRAL 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 677652373 183 LELLSDLnREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQG 226
Cdd:cd03266 176 REFIRQL-RALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
19-231 |
2.86e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 87.48 E-value: 2.86e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 19 SYTVaKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQN-------AT 91
Cdd:PRK13650 20 KYTL-NDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNpdnqfvgAT 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 92 TPGDITVQeLVTRGrYPHQPLFTRwrkedadaVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPT 171
Cdd:PRK13650 99 VEDDVAFG-LENKG-IPHEEMKER--------VNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEAT 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 172 TWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACrYATHLIALREGNIVAQGAPKEI 231
Cdd:PRK13650 169 SMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPREL 227
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
29-205 |
5.12e-20 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 87.48 E-value: 5.12e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 29 SIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVA---RRIGLLAQNAT-------TPGDI-- 96
Cdd:COG4608 40 DIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDITGLSGRELRplrRRMQMVFQDPYaslnprmTVGDIia 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 97 ---TVQELVTRgryphqplftrwrKEDADAVASAMRATGitsLAAQSVD----TLSGGQRQRAWIAMVLAQETSIMLLDE 169
Cdd:COG4608 120 eplRIHGLASK-------------AERRERVAELLELVG---LRPEHADryphEFSGGQRQRIGIARALALNPKLIVCDE 183
|
170 180 190
....*....|....*....|....*....|....*.
gi 677652373 170 PTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLN 205
Cdd:COG4608 184 PVSALDVSIQAQVLNLLEDLQDELGLTYLFISHDLS 219
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
18-236 |
9.35e-20 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 88.17 E-value: 9.35e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 18 GSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQNATT-PGdi 96
Cdd:TIGR01842 329 GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELfPG-- 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 97 TVQELVTRGRyphqplftrwRKEDADAVASAMRATGITSLAA---QSVDT--------LSGGQRQRAWIAMVLAQETSIM 165
Cdd:TIGR01842 407 TVAENIARFG----------ENADPEKIIEAAKLAGVHELILrlpDGYDTvigpggatLSGGQRQRIALARALYGDPKLV 476
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 677652373 166 LLDEPTTWLDISHQIDLLELLSDLnREKGYTLAAVLHDLNqACRYATHLIALREGNIVAQGaPKEIVTAEL 236
Cdd:TIGR01842 477 VLDEPNSNLDEEGEQALANAIKAL-KARGITVVVITHRPS-LLGCVDKILVLQDGRIARFG-ERDEVLAKL 544
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
5-241 |
9.63e-20 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 85.33 E-value: 9.63e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 5 VARLRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARR-I 83
Cdd:PRK10895 1 MATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRgI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 84 GLLAQNATTPGDITVQELVTRGRYPHQPLFTRWRKEDADAVasaMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETS 163
Cdd:PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANEL---MEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPK 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 677652373 164 IMLLDEPTTWLDISHQIDLLELLSDLnREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTAELIEKIY 241
Cdd:PRK10895 158 FILLDEPFAGVDPISVIDIKRIIEHL-RDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVY 234
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
22-235 |
1.27e-19 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 84.85 E-value: 1.27e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 22 VAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQ-NATTPGDITVQE 100
Cdd:cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQeNVLFNRSIRDNI 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 101 LVTRGRYPHQPLFTRWRKEDADAVASAMRATGITSLAAQSVdTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQI 180
Cdd:cd03252 97 ALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEH 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 677652373 181 DLLELLSDLNreKGYTLAAVLHDLNqACRYATHLIALREGNIVAQGAPKEIVTAE 235
Cdd:cd03252 176 AIMRNMHDIC--AGRTVIIIAHRLS-TVKNADRIIVMEKGRIVEQGSHDELLAEN 227
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
7-208 |
1.71e-19 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 83.77 E-value: 1.71e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 7 RLRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGll 86
Cdd:PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLG-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 87 AQNATTPgDITVQELVTrgryphqplFtrWRK------EDADAVASAMRATGITSLAAQsvdTLSGGQRQRAWIAMVLAQ 160
Cdd:PRK13539 80 HRNAMKP-ALTVAENLE---------F--WAAflggeeLDIAAALEAVGLAPLAHLPFG---YLSAGQKRRVALARLLVS 144
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 677652373 161 ETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQAC 208
Cdd:PRK13539 145 NRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG 192
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
17-239 |
1.89e-19 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 85.06 E-value: 1.89e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 17 YGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQrYASKevarriGLLAQNattpgdi 96
Cdd:PRK13638 11 YQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLD-YSKR------GLLALR------- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 97 tvQELVTRGRYPHQPLFtrWRKEDADaVASAMRATGITS------------------LAAQSVDTLSGGQRQRAWIAMVL 158
Cdd:PRK13638 77 --QQVATVFQDPEQQIF--YTDIDSD-IAFSLRNLGVPEaeitrrvdealtlvdaqhFRHQPIQCLSHGQKKRVAIAGAL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 159 AQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVlHDLNQACRYATHLIALREGNIVAQGAPKEIVT-AELI 237
Cdd:PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISS-HDIDLIYEISDAVYVLRQGQILTHGAPGEVFAcTEAM 230
|
..
gi 677652373 238 EK 239
Cdd:PRK13638 231 EQ 232
|
|
| type_I_sec_HlyB |
TIGR01846 |
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in ... |
22-235 |
1.95e-19 |
|
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273831 [Multi-domain] Cd Length: 694 Bit Score: 87.49 E-value: 1.95e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 22 VAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQ-NATTPGDITVQE 100
Cdd:TIGR01846 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQeNVLFSRSIRDNI 551
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 101 LVTRGRYPHQPLFTRWRKEDADAVASAMRATGITSLAAQSVDtLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQI 180
Cdd:TIGR01846 552 ALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGAN-LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEA 630
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 677652373 181 DLLELLSDLNRekGYTLAAVLHDLNqACRYATHLIALREGNIVAQGAPKEIVTAE 235
Cdd:TIGR01846 631 LIMRNMREICR--GRTVIIIAHRLS-TVRACDRIIVLEKGQIAESGRHEELLALQ 682
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
8-207 |
2.25e-19 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 83.69 E-value: 2.25e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP---VDGHVWLDGEQIQRYASKevARRIG 84
Cdd:COG4136 2 LSLENLTITLGGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPafsASGEVLLNGRRLTALPAE--QRRIG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 85 LLAQNAttpgditvqelvtrgryphqPLFTRW---------------RKEDADAVASAMRATGITSLAAQSVDTLSGGQR 149
Cdd:COG4136 80 ILFQDD--------------------LLFPHLsvgenlafalpptigRAQRRARVEQALEEAGLAGFADRDPATLSGGQR 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 150 QRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGytLAAVL--HDLNQA 207
Cdd:COG4136 140 ARVALLRALLAEPRALLLDEPFSKLDAALRAQFREFVFEQIRQRG--IPALLvtHDEEDA 197
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
8-220 |
2.32e-19 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 81.73 E-value: 2.32e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGeqiqryaskevARRIGLLA 87
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGS-----------TVKIGYFE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 88 QnattpgditvqelvtrgryphqplftrwrkedadavasamratgitslaaqsvdtLSGGQRQRAWIAMVLAQETSIMLL 167
Cdd:cd03221 70 Q-------------------------------------------------------LSGGEKMRLALAKLLLENPNLLLL 94
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 677652373 168 DEPTTWLDISHQIDLLELLSDLNRekgyTLAAVLHD---LNQACryaTHLIALREG 220
Cdd:cd03221 95 DEPTNHLDLESIEALEEALKEYPG----TVILVSHDryfLDQVA---TKIIELEDG 143
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
24-242 |
4.47e-19 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 86.23 E-value: 4.47e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEvARR--IGLLAQNATTPGDITVQEL 101
Cdd:COG1129 21 DGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSPRD-AQAagIAIIHQELNLVPNLSVAEN 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 102 VTRGRYPHQPLFTRWRKEDADAvASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDiSHQID 181
Cdd:COG1129 100 IFLGREPRRGGLIDWRAMRRRA-RELLARLGLDIDPDTPVGDLSVAQQQLVEIARALSRDARVLILDEPTASLT-EREVE 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 677652373 182 -LLELLSDLnREKGytlAAVL---HDLNQACRYATHLIALREGNIVAQGAPKEIVTAELIEKIYG 242
Cdd:COG1129 178 rLFRIIRRL-KAQG---VAIIyisHRLDEVFEIADRVTVLRDGRLVGTGPVAELTEDELVRLMVG 238
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
12-220 |
5.04e-19 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 82.76 E-value: 5.04e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 12 QLTLGYGSYT----VAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHV-WLDGEQIQRYASKEVARRIGLL 86
Cdd:cd03290 2 QVTNGYFSWGsglaTLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVhWSNKNESEPSFEATRSRNRYSV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 87 AQNATTPG--DITVQELVTRGryphQPLFTRWRKEDADAVA-----SAMRATGITSLAAQSVDtLSGGQRQRAWIAMVLA 159
Cdd:cd03290 82 AYAAQKPWllNATVEENITFG----SPFNKQRYKAVTDACSlqpdiDLLPFGDQTEIGERGIN-LSGGQRQRICVARALY 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 677652373 160 QETSIMLLDEPTTWLDI---SH--QIDLLELLSDLNRekgyTLAAVLHDLnQACRYATHLIALREG 220
Cdd:cd03290 157 QNTNIVFLDDPFSALDIhlsDHlmQEGILKFLQDDKR----TLVLVTHKL-QYLPHADWIIAMKDG 217
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
1-252 |
8.79e-19 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 83.16 E-value: 8.79e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 1 MTESVARLRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRlMTPVDGHVWLDGeQIQRYASKEVA 80
Cdd:PRK14258 1 MSKLIPAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNR-MNELESEVRVEG-RVEFFNQNIYE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 81 RRIGL------LAQNATTPG--DITVQELVTRGRYphqplFTRWRK--EDADAVASAMRATG----ITSLAAQSVDTLSG 146
Cdd:PRK14258 79 RRVNLnrlrrqVSMVHPKPNlfPMSVYDNVAYGVK-----IVGWRPklEIDDIVESALKDADlwdeIKHKIHKSALDLSG 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 147 GQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYaTHLIALREGNivaqg 226
Cdd:PRK14258 154 GQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRL-SDFTAFFKGN----- 227
|
250 260
....*....|....*....|....*.
gi 677652373 227 apkEIVTAELIEkiYGLRCMIIDDPV 252
Cdd:PRK14258 228 ---ENRIGQLVE--FGLTKKIFNSPH 248
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
24-237 |
1.35e-18 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 83.70 E-value: 1.35e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEV--ARR-IG-------LLAQNattp 93
Cdd:PRK11153 22 NNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELrkARRqIGmifqhfnLLSSR---- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 94 gdiTVQELVTrgryphQPL-FTRWRKEDADA-VASAMRATGITSLA----AQsvdtLSGGQRQRAWIAMVLAQETSIMLL 167
Cdd:PRK11153 98 ---TVFDNVA------LPLeLAGTPKAEIKArVTELLELVGLSDKAdrypAQ----LSGGQKQRVAIARALASNPKVLLC 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 677652373 168 DEPTTWLD--ISHQIdlLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGA-------PKEIVTAELI 237
Cdd:PRK11153 165 DEATSALDpaTTRSI--LELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTvsevfshPKHPLTREFI 241
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
24-231 |
3.96e-18 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 83.26 E-value: 3.96e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQNATT-PGdiTVQELV 102
Cdd:COG4618 349 RGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQWDREELGRHIGYLPQDVELfDG--TIAENI 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 103 TRgryphqplFTrwrKEDADAVASAMRATG----ITSLaAQSVDT--------LSGGQRQRAWIAMVLAQETSIMLLDEP 170
Cdd:COG4618 427 AR--------FG---DADPEKVVAAAKLAGvhemILRL-PDGYDTrigeggarLSGGQRQRIGLARALYGDPRLVVLDEP 494
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 677652373 171 TTWLDISHQIDLLELLSDLnREKGYTLAAVLHDLNqACRYATHLIALREGNIVAQGAPKEI 231
Cdd:COG4618 495 NSNLDDEGEAALAAAIRAL-KARGATVVVITHRPS-LLAAVDKLLVLRDGRVQAFGPRDEV 553
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
2-239 |
9.09e-18 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 82.37 E-value: 9.09e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 2 TESVARLRGD----QLTLGY-GSYTVA-KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYA 75
Cdd:PRK11176 332 KRVIERAKGDiefrNVTFTYpGKEVPAlRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYT 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 76 SKEVARRIGLLAQNATTPGDiTVQELVTrgrYPHQPLFTRWRKEDADAVASAMratGITSLAAQSVDT--------LSGG 147
Cdd:PRK11176 412 LASLRNQVALVSQNVHLFND-TIANNIA---YARTEQYSREQIEEAARMAYAM---DFINKMDNGLDTvigengvlLSGG 484
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 148 QRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKgyTLAAVLHDLNqACRYATHLIALREGNIVAQGa 227
Cdd:PRK11176 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR--TSLVIAHRLS-TIEKADEILVVEDGEIVERG- 560
|
250
....*....|..
gi 677652373 228 pkeiVTAELIEK 239
Cdd:PRK11176 561 ----THAELLAQ 568
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
8-223 |
9.44e-18 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 79.53 E-value: 9.44e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGY-GSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVA---RRI 83
Cdd:PRK10908 2 IRFEHVSKAYlGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPflrRQI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 84 GLLAQNATTPGDITVQELVTrgryphQPLFTRWRKED--ADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQE 161
Cdd:PRK10908 82 GMIFQDHHLLMDRTVYDNVA------IPLIIAGASGDdiRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNK 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 677652373 162 TSIMLLDEPTTWLDISHQIDLLELLSDLNReKGYTLAAVLHDLNQACRYATHLIALREGNIV 223
Cdd:PRK10908 156 PAVLLADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
8-207 |
2.41e-17 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 77.78 E-value: 2.41e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASkEVARRIGLLA 87
Cdd:TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRD-EPHENILYLG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 88 QNATTPGDITVQELVTRGRYPHQPlftrwrkeDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLL 167
Cdd:TIGR01189 80 HLPGLKPELSALENLHFWAAIHGG--------AQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWIL 151
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 677652373 168 DEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQA 207
Cdd:TIGR01189 152 DEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV 191
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
2-234 |
2.51e-17 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 81.30 E-value: 2.51e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 2 TESVARLRGD----QLTLGYGSYTVA--KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYA 75
Cdd:TIGR02203 321 TRAIERARGDvefrNVTFRYPGRDRPalDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYT 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 76 SKEVARRIGLLAQNATTPGDiTVQELVTRGRYPHQPlftRWRKEDADAVASAMR-----ATGITSLAAQSVDTLSGGQRQ 150
Cdd:TIGR02203 401 LASLRRQVALVSQDVVLFND-TIANNIAYGRTEQAD---RAEIERALAAAYAQDfvdklPLGLDTPIGENGVLLSGGQRQ 476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 151 RAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKgyTLAAVLHDLNqACRYATHLIALREGNIVAQGAPKE 230
Cdd:TIGR02203 477 RLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGR--TTLVIAHRLS-TIEKADRIVVMDDGRIVERGTHNE 553
|
....
gi 677652373 231 IVTA 234
Cdd:TIGR02203 554 LLAR 557
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
8-207 |
4.08e-17 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 77.15 E-value: 4.08e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRyASKEVARRIGLLA 87
Cdd:cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDF-QRDSIARGLLYLG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 88 QNATTPGDITVQELVTRGRYPHqplftrwrkeDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLL 167
Cdd:cd03231 80 HAPGIKTTLSVLENLRFWHADH----------SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWIL 149
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 677652373 168 DEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQA 207
Cdd:cd03231 150 DEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLS 189
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
12-215 |
4.18e-17 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 78.22 E-value: 4.18e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 12 QLTLGYGSYTvaknLNV---SIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQrYASKEVarrigllaq 88
Cdd:cd03237 5 TMKKTLGEFT----LEVeggSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS-YKPQYI--------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 89 NATTPGdiTVQEL---VTRGRYPHqplfTRWRKEdadavasAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIM 165
Cdd:cd03237 71 KADYEG--TVRDLlssITKDFYTH----PYFKTE-------IAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIY 137
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 677652373 166 LLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLI 215
Cdd:cd03237 138 LLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLI 187
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
27-204 |
5.87e-17 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 78.98 E-value: 5.87e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 27 NVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHV-WLdGEQIQRYASK---EVARRIGLLAQNA-------TTPGD 95
Cdd:PRK15079 41 TLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVaWL-GKDLLGMKDDewrAVRSDIQMIFQDPlaslnprMTIGE 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 96 ITVQELVTRgrYPHQPlftrwRKEDADAVASAMRATGI-TSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWL 174
Cdd:PRK15079 120 IIAEPLRTY--HPKLS-----RQEVKDRVKAMMLKVGLlPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSAL 192
|
170 180 190
....*....|....*....|....*....|
gi 677652373 175 DISHQIDLLELLSDLNREKGYTLAAVLHDL 204
Cdd:PRK15079 193 DVSIQAQVVNLLQQLQREMGLSLIFIAHDL 222
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
8-226 |
6.11e-17 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 77.95 E-value: 6.11e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWL---DGEQIQRYASKEVARRI- 83
Cdd:TIGR02323 4 LQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYimrSGAELELYQLSEAERRRl 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 84 -----GLLAQNattPGDITVQELVTRGRYPHQPLFTRWRKedadavASAMRATGITSLAAQSVD---------TLSGGQR 149
Cdd:TIGR02323 84 mrtewGFVHQN---PRDGLRMRVSAGANIGERLMAIGARH------YGNIRATAQDWLEEVEIDptriddlprAFSGGMQ 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 677652373 150 QRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQG 226
Cdd:TIGR02323 155 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESG 231
|
|
| NHLM_micro_ABC1 |
TIGR03796 |
NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein; This protein describes ... |
2-235 |
1.23e-16 |
|
NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein; This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]
Pssm-ID: 274788 [Multi-domain] Cd Length: 710 Bit Score: 79.22 E-value: 1.23e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 2 TESVARLRG----DQLTLGYGSYT--VAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYA 75
Cdd:TIGR03796 468 SEPPRRLSGyvelRNITFGYSPLEppLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIP 547
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 76 SKEVARRIGLLAQnattpgDI-----TVQELVT--RGRYPHQPLFTRWRkeDA---DAVASamRATGITSLAAQSVDTLS 145
Cdd:TIGR03796 548 REVLANSVAMVDQ------DIflfegTVRDNLTlwDPTIPDADLVRACK--DAaihDVITS--RPGGYDAELAEGGANLS 617
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 146 GGQRQRAWIAMVLAQETSIMLLDEPTTWLDishqiDLLELLSDLN-REKGYTLAAVLHDLNqACRYATHLIALREGNIVA 224
Cdd:TIGR03796 618 GGQRQRLEIARALVRNPSILILDEATSALD-----PETEKIIDDNlRRRGCTCIIVAHRLS-TIRDCDEIIVLERGKVVQ 691
|
250
....*....|.
gi 677652373 225 QGAPKEIVTAE 235
Cdd:TIGR03796 692 RGTHEELWAVG 702
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1-242 |
2.54e-16 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 77.90 E-value: 2.54e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 1 MTESVARLRGdqLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVA 80
Cdd:PRK09700 1 MATPYISMAG--IGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 81 RR-IGLLAQNATTPGDITVQELVTRGRYPHQPLF----TRWRKEDADAVASAMRaTGITSLAAQSVDTLSGGQRQRAWIA 155
Cdd:PRK09700 79 QLgIGIIYQELSVIDELTVLENLYIGRHLTKKVCgvniIDWREMRVRAAMMLLR-VGLKVDLDEKVANLSISHKQMLEIA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 156 MVLAQETSIMLLDEPTTWLdISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTAE 235
Cdd:PRK09700 158 KTLMLDAKVIIMDEPTSSL-TNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDD 236
|
....*..
gi 677652373 236 LIEKIYG 242
Cdd:PRK09700 237 IVRLMVG 243
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
32-204 |
2.67e-16 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 76.25 E-value: 2.67e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 32 DGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHV-----WLD------GEQIQRYASK------EVARR---IGLLAQNAT 91
Cdd:cd03236 25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFddppdWDEildefrGSELQNYFTKllegdvKVIVKpqyVDLIPKAVK 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 92 TpgdiTVQELVTRgryphqplftrwrKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPT 171
Cdd:cd03236 105 G----KVGELLKK-------------KDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPS 167
|
170 180 190
....*....|....*....|....*....|...
gi 677652373 172 TWLDISHQIDLLELLSDLNREKGYTLaAVLHDL 204
Cdd:cd03236 168 SYLDIKQRLNAARLIRELAEDDNYVL-VVEHDL 199
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
37-231 |
2.91e-16 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 76.93 E-value: 2.91e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 37 AIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVA---RRIGLLAQNA-------TTPGDITVQELVTRGR 106
Cdd:PRK11308 45 AVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKllrQKIQIVFQNPygslnprKKVGQILEEPLLINTS 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 107 YPhqplftrwRKEDADAVASAMRATGI-TSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLEL 185
Cdd:PRK11308 125 LS--------AAERREKALAMMAKVGLrPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNL 196
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 677652373 186 LSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEI 231
Cdd:PRK11308 197 MMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQI 242
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
16-234 |
3.05e-16 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 75.50 E-value: 3.05e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 16 GYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGeqiqryaskevarRIG-LLAQNATTPG 94
Cdd:COG1134 35 RREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVEVNG-------------RVSaLLELGAGFHP 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 95 DITVQELV-TRGRYphqpL-FTRwrkEDADAVASAMRA-TGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEpt 171
Cdd:COG1134 102 ELTGRENIyLNGRL----LgLSR---KEIDEKFDEIVEfAELGDFIDQPVKTYSSGMRARLAFAVATAVDPDILLVDE-- 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 677652373 172 tWL---DISHQIDLLELLSDLnREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTA 234
Cdd:COG1134 173 -VLavgDAAFQKKCLARIREL-RESGRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDPEEVIAA 236
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
33-237 |
7.68e-16 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 74.74 E-value: 7.68e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 33 GHFTAIIGPNGCGKS----TLLRTLSRLMTPVDGHVWLDGEQIQryASKEVARRIGLLAQN---ATTPgditVQELVTRG 105
Cdd:PRK10418 29 GRVLALVGGSGSGKSltcaAALGILPAGVRQTAGRVLLDGKPVA--PCALRGRKIATIMQNprsAFNP----LHTMHTHA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 106 RyphQPLFTRWRKEDADAVASAMRATGITSlaAQSVDTL-----SGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQI 180
Cdd:PRK10418 103 R---ETCLALGKPADDATLTAALEAVGLEN--AARVLKLypfemSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQA 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 677652373 181 DLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQG-------APKEIVTAELI 237
Cdd:PRK10418 178 RILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGdvetlfnAPKHAVTRSLV 241
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
8-226 |
1.06e-15 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 74.58 E-value: 1.06e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWL---DGEQIQRYASKEVARRI- 83
Cdd:PRK11701 7 LSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYrmrDGQLRDLYALSEAERRRl 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 84 -----GLLAQNATtpgditvQEL---VTRGRYPHQPLFTRWRKEDADAVASAMRATGITSLAAQSVD----TLSGGQRQR 151
Cdd:PRK11701 87 lrtewGFVHQHPR-------DGLrmqVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDdlptTFSGGMQQR 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 677652373 152 AWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGytLAAVL--HDLNQACRYATHLIALREGNIVAQG 226
Cdd:PRK11701 160 LQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELG--LAVVIvtHDLAVARLLAHRLLVMKQGRVVESG 234
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
13-223 |
1.85e-15 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 75.70 E-value: 1.85e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 13 LTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHV-WldgeqiqryasKEVArRIGLLAQNAT 91
Cdd:PRK15064 325 LTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVkW-----------SENA-NIGYYAQDHA 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 92 T--PGDITVQELVtrgryphqplfTRWRKEDADavASAMRATGITSLAAQ-----SVDTLSGGQRQRAWIAMVLAQETSI 164
Cdd:PRK15064 393 YdfENDLTLFDWM-----------SQWRQEGDD--EQAVRGTLGRLLFSQddikkSVKVLSGGEKGRMLFGKLMMQKPNV 459
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 677652373 165 MLLDEPTTWLDIsHQIDLLELLsdLNREKGyTLAAVLHDLNQACRYATHLIALREGNIV 223
Cdd:PRK15064 460 LVMDEPTNHMDM-ESIESLNMA--LEKYEG-TLIFVSHDREFVSSLATRIIEITPDGVV 514
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
24-239 |
1.96e-15 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 72.56 E-value: 1.96e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLM--TPVDGHVWLDGEQIQRYASKEVARR-IGLLAQN-ATTPGdITVQ 99
Cdd:cd03217 17 KGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPkyEVTEGEILFKGEDITDLPPEERARLgIFLAFQYpPEIPG-VKNA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 100 ELVtrgRYphqplftrwrkedadavasamratgitslaaqsVD-TLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDish 178
Cdd:cd03217 96 DFL---RY---------------------------------VNeGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLD--- 136
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 677652373 179 qIDLLELLSD-LN--REKGYTLAAVLH-----DLNQACRyaTHLiaLREGNIVAQGaPKEIvtAELIEK 239
Cdd:cd03217 137 -IDALRLVAEvINklREEGKSVLIITHyqrllDYIKPDR--VHV--LYDGRIVKSG-DKEL--ALEIEK 197
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
11-204 |
2.64e-15 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 73.22 E-value: 2.64e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 11 DQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGhvwldgeQIQRyaskEVARRIGLLAQNA 90
Cdd:PRK09544 8 ENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG-------VIKR----NGKLRIGYVPQKL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 91 TTpgDITVQELVTRgryphqplFTRWRK--EDADaVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLD 168
Cdd:PRK09544 77 YL--DTTLPLTVNR--------FLRLRPgtKKED-ILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLD 145
|
170 180 190
....*....|....*....|....*....|....*.
gi 677652373 169 EPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDL 204
Cdd:PRK09544 146 EPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL 181
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
8-220 |
2.88e-15 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 73.20 E-value: 2.88e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYAskevARRIGLLA 87
Cdd:PRK11248 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPG----AERGVVFQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 88 QNATTPGDiTVQELVTRGRYphqplFTRWRKEDADAVASAMRA-TGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIML 166
Cdd:PRK11248 78 NEGLLPWR-NVQDNVAFGLQ-----LAGVEKMQRLEIAHQMLKkVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLL 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 677652373 167 LDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREG 220
Cdd:PRK11248 152 LDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPG 205
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
32-204 |
2.94e-15 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 74.84 E-value: 2.94e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 32 DGHFTAIIGPNGCGKSTLLRTLSRLMTP----VDGHVWLDgEQIQRYASKEVARRIGLLAQNATTPG------------- 94
Cdd:PRK13409 98 EGKVTGILGPNGIGKTTAVKILSGELIPnlgdYEEEPSWD-EVLKRFRGTELQNYFKKLYNGEIKVVhkpqyvdlipkvf 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 95 DITVQELVT----RGRYphqplftrwrkedaDAVASAMratGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEP 170
Cdd:PRK13409 177 KGKVRELLKkvdeRGKL--------------DEVVERL---GLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEP 239
|
170 180 190
....*....|....*....|....*....|....
gi 677652373 171 TTWLDISHQIDLLELLSDLNREKgYTLaAVLHDL 204
Cdd:PRK13409 240 TSYLDIRQRLNVARLIRELAEGK-YVL-VVEHDL 271
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
6-234 |
3.04e-15 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 74.01 E-value: 3.04e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 6 ARLRGDQLTLGYGS----YTVAKNLNVSIPDGHFTAIIGPNGCGKStlLRTLSrLMTPVD--GHVW-----LDGEQIQRY 74
Cdd:PRK11022 2 ALLNVDKLSVHFGDesapFRAVDRISYSVKQGEVVGIVGESGSGKS--VSSLA-IMGLIDypGRVMaekleFNGQDLQRI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 75 ASKE----VARRIGLLAQNATTPGD--ITVQELVTRGRYPHQPLFTRWRKEDAdavASAMRATGITSLAAQsVDT----L 144
Cdd:PRK11022 79 SEKErrnlVGAEVAMIFQDPMTSLNpcYTVGFQIMEAIKVHQGGNKKTRRQRA---IDLLNQVGIPDPASR-LDVyphqL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 145 SGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVA 224
Cdd:PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234
|
250
....*....|
gi 677652373 225 QGAPKEIVTA 234
Cdd:PRK11022 235 TGKAHDIFRA 244
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
19-237 |
3.96e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 73.73 E-value: 3.96e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 19 SYTVAKNlnvsipdgHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWL---------DGEQIQRYAS-------KEVARR 82
Cdd:PRK13631 46 SYTFEKN--------KIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVgdiyigdkkNNHELITNPYskkiknfKELRRR 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 83 IGLLAQnatTPG----DITVQELVTRGryphqPLFTRWRKEDADAVASA-MRATGI-TSLAAQSVDTLSGGQRQRAWIAM 156
Cdd:PRK13631 118 VSMVFQ---FPEyqlfKDTIEKDIMFG-----PVALGVKKSEAKKLAKFyLNKMGLdDSYLERSPFGLSGGQKRRVAIAG 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 157 VLAQETSIMLLDEPTTWLDISHQIDLLELLSDlNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTAEL 236
Cdd:PRK13631 190 ILAIQPEILIFDEPTAGLDPKGEHEMMQLILD-AKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQH 268
|
.
gi 677652373 237 I 237
Cdd:PRK13631 269 I 269
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
24-240 |
4.05e-15 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 72.41 E-value: 4.05e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTlsrLM-----TPVDGHVWLDGEQIQRYASKEVARR-IGLLAQNATT-PGdI 96
Cdd:COG0396 17 KGVNLTIKPGEVHAIMGPNGSGKSTLAKV---LMghpkyEVTSGSILLDGEDILELSPDERARAgIFLAFQYPVEiPG-V 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 97 TVQEL----VTRGRYPHQPLFTrWRKEdadaVASAMRATGI-TSLAAQSVD-TLSGGQRQRAWIAMVLAQETSIMLLDEP 170
Cdd:COG0396 93 SVSNFlrtaLNARRGEELSARE-FLKL----LKEKMKELGLdEDFLDRYVNeGFSGGEKKRNEILQMLLLEPKLAILDET 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 677652373 171 TTWLDishqIDLLELLSD-LNREKGYTLAAVL--HdlNQacR-----YATHLIALREGNIVAQGapkeivTAELIEKI 240
Cdd:COG0396 168 DSGLD----IDALRIVAEgVNKLRSPDRGILIitH--YQ--RildyiKPDFVHVLVDGRIVKSG------GKELALEL 231
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
24-205 |
4.56e-15 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 73.58 E-value: 4.56e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRyASKEVARRIGLLAqnattpG-------DI 96
Cdd:COG4586 39 DDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVLGYVPFK-RRKEFARRIGVVF------GqrsqlwwDL 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 97 TVQE---L------VTRGRYphqplftrwrKEDADAVASAMratGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLL 167
Cdd:COG4586 112 PAIDsfrLlkaiyrIPDAEY----------KKRLDELVELL---DLGELLDTPVRQLSLGQRMRCELAAALLHRPKILFL 178
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 677652373 168 DEPTTWLDISHQIDLLELLSDLNREKGYTLaaVL--HDLN 205
Cdd:COG4586 179 DEPTIGLDVVSKEAIREFLKEYNRERGTTI--LLtsHDMD 216
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
8-235 |
5.69e-15 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 74.09 E-value: 5.69e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGY--GSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGL 85
Cdd:PRK11160 339 LTLNNVSFTYpdQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISV 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 86 LAQ-----NATTPGDITVQelvtrgryphqplftrwrKEDAD--AVASAMRATGITSLA--AQSVDT--------LSGGQ 148
Cdd:PRK11160 419 VSQrvhlfSATLRDNLLLA------------------APNASdeALIEVLQQVGLEKLLedDKGLNAwlgeggrqLSGGE 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 149 RQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKgyTLAAVLHDLNqACRYATHLIALREGNIVAQGAP 228
Cdd:PRK11160 481 QRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNK--TVLMITHRLT-GLEQFDRICVMDNGQIIEQGTH 557
|
....*..
gi 677652373 229 KEIVTAE 235
Cdd:PRK11160 558 QELLAQQ 564
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
4-234 |
1.40e-14 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 72.82 E-value: 1.40e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 4 SVARLRGDQLtlgygsYTVAKNLNVSIPDGHFTAIIGPNGCGKS-TLLRTLSRLMTP----VDGHVWLDGEQIQrYASKE 78
Cdd:PRK15134 12 SVAFRQQQTV------RTVVNDVSLQIEAGETLALVGESGSGKSvTALSILRLLPSPpvvyPSGDIRFHGESLL-HASEQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 79 VAR-----RIGLLAQNATtpgdITVQELVT--RGRYPHQPLFTRWRKEDADA-VASAMRATGITSLAAQSVD---TLSGG 147
Cdd:PRK15134 85 TLRgvrgnKIAMIFQEPM----VSLNPLHTleKQLYEVLSLHRGMRREAARGeILNCLDRVGIRQAAKRLTDyphQLSGG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 148 QRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGA 227
Cdd:PRK15134 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNR 240
|
....*..
gi 677652373 228 PKEIVTA 234
Cdd:PRK15134 241 AATLFSA 247
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
33-204 |
1.43e-14 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 72.89 E-value: 1.43e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 33 GHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQ---IQRYASKEVARRIGLLAQN----ATTPGDI--------- 96
Cdd:COG1245 99 GKVTGILGPNGIGKSTALKILSGELKPNLGDYDEEPSWdevLKRFRGTELQDYFKKLANGeikvAHKPQYVdlipkvfkg 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 97 TVQELVT----RGRyphqplftrwrkedADAVASAMratGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTT 172
Cdd:COG1245 179 TVRELLEkvdeRGK--------------LDELAEKL---GLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPSS 241
|
170 180 190
....*....|....*....|....*....|..
gi 677652373 173 WLDISHQIDLLELLSDLNREKGYTLaAVLHDL 204
Cdd:COG1245 242 YLDIYQRLNVARLIRELAEEGKYVL-VVEHDL 272
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
22-231 |
2.43e-14 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 71.80 E-value: 2.43e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 22 VAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEvaRRIGLLAQN-ATTPgDITVQE 100
Cdd:PRK11650 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPAD--RDIAMVFQNyALYP-HMSVRE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 101 -----LVTRGryphqplftrWRKEDADA-VASAMRATGITSLAAQSVDTLSGGQRQRawIAM--VLAQETSIMLLDEPTT 172
Cdd:PRK11650 96 nmaygLKIRG----------MPKAEIEErVAEAARILELEPLLDRKPRELSGGQRQR--VAMgrAIVREPAVFLFDEPLS 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 173 WLDISHQIDL-LELLsDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEI 231
Cdd:PRK11650 164 NLDAKLRVQMrLEIQ-RLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEV 222
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
25-232 |
2.45e-14 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 72.14 E-value: 2.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 25 NLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHV-------WLDGEQIQRYASKEVARRIGLLAQNATTpgdit 97
Cdd:TIGR03269 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVnvrvgdeWVDMTKPGPDGRGRAKRYIGILHQEYDL----- 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 98 vqelvtrgrYPHQPLFTRWRKE------DADAVASA---MRATGITSLAAQSV-----DTLSGGQRQRAWIAMVLAQETS 163
Cdd:TIGR03269 377 ---------YPHRTVLDNLTEAiglelpDELARMKAvitLKMVGFDEEKAEEIldkypDELSEGERHRVALAQVLIKEPR 447
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 677652373 164 IMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDL---NQACRYAThliALREGNIVAQGAPKEIV 232
Cdd:TIGR03269 448 IVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMdfvLDVCDRAA---LMRDGKIVKIGDPEEIV 516
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
6-188 |
3.34e-14 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 71.76 E-value: 3.34e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 6 ARLRGDQLTLGYGSYTV-AKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLmtpvdghvWLDGE-QIQRYASKEVArri 83
Cdd:COG4178 361 GALALEDLTLRTPDGRPlLEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGL--------WPYGSgRIARPAGARVL--- 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 84 gLLAQNATTPGDiTVQELVTrgrYPHQPlftrwRKEDADAVASAMRATGITSLAAQsVDT-------LSGGQRQRAWIAM 156
Cdd:COG4178 430 -FLPQRPYLPLG-TLREALL---YPATA-----EAFSDAELREALEAVGLGHLAER-LDEeadwdqvLSLGEQQRLAFAR 498
|
170 180 190
....*....|....*....|....*....|..
gi 677652373 157 VLAQETSIMLLDEPTTWLDISHQIDLLELLSD 188
Cdd:COG4178 499 LLLHKPDWLFLDEATSALDEENEAALYQLLRE 530
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
23-235 |
4.74e-14 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 71.41 E-value: 4.74e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 23 AKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMtPVDGHVWLDGEQIQRYASKEVARRIGLLAQNATTPGDiTVQELV 102
Cdd:PRK11174 366 AGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG-TLRDNV 443
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 103 TRGRyphqplftrwrkEDAD--AVASAMRATGI---TSLAAQSVDT--------LSGGQRQRAWIAMVLAQETSIMLLDE 169
Cdd:PRK11174 444 LLGN------------PDASdeQLQQALENAWVsefLPLLPQGLDTpigdqaagLSVGQAQRLALARALLQPCQLLLLDE 511
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 677652373 170 PTTWLDISHQIDLLELLSDLNREKgyTLAAVLHDLNQACRYATHLIaLREGNIVAQGAPKEIVTAE 235
Cdd:PRK11174 512 PTASLDAHSEQLVMQALNAASRRQ--TTLMVTHQLEDLAQWDQIWV-MQDGQIVQQGDYAELSQAG 574
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
16-232 |
6.93e-14 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 70.92 E-value: 6.93e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 16 GYGSyTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQnattpgd 95
Cdd:TIGR01193 484 GYGS-NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQ------- 555
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 96 itvQELVTRGRYPHQPLFTRWRKEDADAVASAMRATGI------------TSLAAQSvDTLSGGQRQRAWIAMVLAQETS 163
Cdd:TIGR01193 556 ---EPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIkddienmplgyqTELSEEG-SSISGGQKQRIALARALLTDSK 631
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 677652373 164 IMLLDEPTTWLDISHQIDLLELLSDLNREkgyTLAAVLHDLNQACRyATHLIALREGNIVAQGAPKEIV 232
Cdd:TIGR01193 632 VLILDESTSNLDTITEKKIVNNLLNLQDK---TIIFVAHRLSVAKQ-SDKIIVLDHGKIIEQGSHDELL 696
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
14-176 |
7.23e-14 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 71.04 E-value: 7.23e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 14 TLGY-GSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVwldgeqiqrYASKEVarRIGLLAQNATT 92
Cdd:PLN03073 515 SFGYpGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV---------FRSAKV--RMAVFSQHHVD 583
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 93 PGDITVQELVTRGR-YPHQPlftrwrkedADAVASAMRATGIT-SLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEP 170
Cdd:PLN03073 584 GLDLSSNPLLYMMRcFPGVP---------EQKLRAHLGSFGVTgNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEP 654
|
....*.
gi 677652373 171 TTWLDI 176
Cdd:PLN03073 655 SNHLDL 660
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-238 |
9.28e-14 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 70.44 E-value: 9.28e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 1 MTESVARLRGdqLTLGYGSyTVA-KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIqRYASKEV 79
Cdd:COG3845 1 MMPPALELRG--ITKRFGG-VVAnDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPV-RIRSPRD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 80 ARR--IGLLAQNATTPGDITVQELVTRGRYPHQPLFTRWRKEDADaVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMV 157
Cdd:COG3845 77 AIAlgIGMVHQHFMLVPNLTVAENIVLGLEPTKGGRLDRKAARAR-IRELSERYGLDVDPDAKVEDLSVGEQQRVEILKA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 158 LAQETSIMLLDEPTTWLDISHQIDLLELLSDLnREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTAELI 237
Cdd:COG3845 156 LYRGARILILDEPTAVLTPQEADELFEILRRL-AAEGKSIIFITHKLREVMAIADRVTVLRRGKVVGTVDTAETSEEELA 234
|
.
gi 677652373 238 E 238
Cdd:COG3845 235 E 235
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
6-241 |
1.11e-13 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 68.37 E-value: 1.11e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 6 ARLRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARR-IG 84
Cdd:PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREaVA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 85 LLAQNATTPGDITVQELVTRGRYphqplFtrwrkedADAVASAMRATGITSL-------AAQSVDTLSGGQRQRAWIAMV 157
Cdd:PRK11614 84 IVPEGRRVFSRMTVEENLAMGGF-----F-------AERDQFQERIKWVYELfprlherRIQRAGTMSGGEQQMLAIGRA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 158 LAQETSIMLLDEPTTWLD--ISHQI-DLLELLsdlnREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTA 234
Cdd:PRK11614 152 LMSQPRLLLLDEPSLGLApiIIQQIfDTIEQL----REQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227
|
....*..
gi 677652373 235 ELIEKIY 241
Cdd:PRK11614 228 EAVRSAY 234
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
38-204 |
1.46e-13 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 69.81 E-value: 1.46e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 38 IIGPNGCGKSTLLRTLSRLMTPVDGHVwldgeqiqryaSKEVarRIGLLAQNATTPGDITVQELVtRGRYPhQPLFTRWR 117
Cdd:COG1245 371 IVGPNGIGKTTFAKILAGVLKPDEGEV-----------DEDL--KISYKPQYISPDYDGTVEEFL-RSANT-DDFGSSYY 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 118 KEDAdavasaMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTL 197
Cdd:COG1245 436 KTEI------IKPLGLEKLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRFAENRGKTA 509
|
....*..
gi 677652373 198 AAVLHDL 204
Cdd:COG1245 510 MVVDHDI 516
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
24-234 |
2.00e-13 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 69.50 E-value: 2.00e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARR--------------IGLLAQN 89
Cdd:PRK10261 33 RNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSeqsaaqmrhvrgadMAMIFQE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 90 ATTPGD--ITVQELVTRGRYPHQPLftrwRKEDADAVASAM----RATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETS 163
Cdd:PRK10261 113 PMTSLNpvFTVGEQIAESIRLHQGA----SREEAMVEAKRMldqvRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPA 188
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 677652373 164 IMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTA 234
Cdd:PRK10261 189 VLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHA 259
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
22-204 |
2.33e-13 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 67.46 E-value: 2.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 22 VAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWL--DGEQIqryaskEVA----RRIglLAQNATTPGD 95
Cdd:COG4778 26 VLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVrhDGGWV------DLAqaspREI--LALRRRTIGY 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 96 ITvQELVTRGRYP-----HQPLFTR-WRKEDADAVASAM-RATGI-TSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLL 167
Cdd:COG4778 98 VS-QFLRVIPRVSaldvvAEPLLERgVDREEARARARELlARLNLpERLWDLPPATFSGGEQQRVNIARGFIADPPLLLL 176
|
170 180 190
....*....|....*....|....*....|....*..
gi 677652373 168 DEPTTWLDISHQIDLLELLSDLnREKGYTLAAVLHDL 204
Cdd:COG4778 177 DEPTASLDAANRAVVVELIEEA-KARGTAIIGIFHDE 212
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
26-228 |
3.12e-13 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 69.27 E-value: 3.12e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 26 LNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQryASKEVARR-IGLLAQNATTPGDITVQElvtr 104
Cdd:TIGR01257 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIE--TNLDAVRQsLGMCPQHNILFHHLTVAE---- 1022
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 105 grypHQPLFTRWRKEDADAVASAMRA----TGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQI 180
Cdd:TIGR01257 1023 ----HILFYAQLKGRSWEEAQLEMEAmledTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRR 1098
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 677652373 181 DLLELLsdLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAP 228
Cdd:TIGR01257 1099 SIWDLL--LKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTP 1144
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
16-230 |
3.16e-13 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 68.98 E-value: 3.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 16 GYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVAR-----------RIG 84
Cdd:PRK10535 17 GEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQlrrehfgfifqRYH 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 85 LL-----AQNATTPGditvqelVTRGRYPHQplftrwRKEDADAVASAMratGITSLAAQSVDTLSGGQRQRAWIAMVLA 159
Cdd:PRK10535 97 LLshltaAQNVEVPA-------VYAGLERKQ------RLLRAQELLQRL---GLEDRVEYQPSQLSGGQQQRVSIARALM 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 677652373 160 QETSIMLLDEPTTWLDISHQIDLLELLSDLnREKGYTLAAVLHDLNQACRyATHLIALREGNIVAQGAPKE 230
Cdd:PRK10535 161 NGGQVILADEPTGALDSHSGEEVMAILHQL-RDRGHTVIIVTHDPQVAAQ-AERVIEIRDGEIVRNPPAQE 229
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
11-235 |
4.17e-13 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 68.59 E-value: 4.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 11 DQLTLGYGS-YTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQN 89
Cdd:PRK10790 344 DNVSFAYRDdNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQD 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 90 ATTPGDiTVQELVTRGRYPHQPLFtrWRKEDADAVASAMRA--TGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLL 167
Cdd:PRK10790 424 PVVLAD-TFLANVTLGRDISEEQV--WQALETVQLAELARSlpDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILIL 500
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 677652373 168 DEPTTWLDISHQIDLLELLSdLNREKGyTLAAVLHDLNQACRyATHLIALREGNIVAQGAPKEIVTAE 235
Cdd:PRK10790 501 DEATANIDSGTEQAIQQALA-AVREHT-TLVVIAHRLSTIVE-ADTILVLHRGQAVEQGTHQQLLAAQ 565
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
24-220 |
9.35e-13 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 65.18 E-value: 9.35e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVwldgeqiqryaskEVARRIGLLAQ-----NAttpgdiTV 98
Cdd:cd03250 22 KDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSV-------------SVPGSIAYVSQepwiqNG------TI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 99 QELVTRGRyphqplftRWRKEDADAV--ASAMRaTGITSLAAQsvD---------TLSGGQRQRAWIAMVLAQETSIMLL 167
Cdd:cd03250 83 RENILFGK--------PFDEERYEKVikACALE-PDLEILPDG--DlteigekgiNLSGGQKQRISLARAVYSDADIYLL 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 677652373 168 DEPTTWLDI---SHQIDLLeLLSDLNREKgyTLAAVLHDLnQACRYATHLIALREG 220
Cdd:cd03250 152 DDPLSAVDAhvgRHIFENC-ILGLLLNNK--TRILVTHQL-QLLPHADQIVVLDNG 203
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
13-234 |
1.10e-12 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 67.46 E-value: 1.10e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 13 LTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIqryASKEVA--RRIGLLAQNA 90
Cdd:NF033858 272 LTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPV---DAGDIAtrRRVGYMSQAF 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 91 TTPGDITV-QELVTRGRYPHQPlftrwRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQR---AwIAMVLAQEtsIML 166
Cdd:NF033858 349 SLYGELTVrQNLELHARLFHLP-----AAEIAARVAEMLERFDLADVADALPDSLPLGIRQRlslA-VAVIHKPE--LLI 420
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 677652373 167 LDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQA--C-RyathlIAL-REGNIVAQGAPKEIVTA 234
Cdd:NF033858 421 LDEPTSGVDPVARDMFWRLLIELSREDGVTIFISTHFMNEAerCdR-----ISLmHAGRVLASDTPAALVAA 487
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
25-231 |
1.42e-12 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 66.44 E-value: 1.42e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 25 NLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP------VDGHVWLDGEQ-IQRYASKevaRRIGLLAQNAttpgdit 97
Cdd:PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPqkgrivLNGRVLFDAEKgICLPPEK---RRIGYVFQDA------- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 98 vqelvtrgR-YPHQP----LFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTT 172
Cdd:PRK11144 86 --------RlFPHYKvrgnLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLA 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 677652373 173 WLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEI 231
Cdd:PRK11144 158 SLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEV 216
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
10-178 |
2.01e-12 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 66.89 E-value: 2.01e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 10 GDQLTLGYGSYTVAKN-------LNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEqiqryaskevarr 82
Cdd:TIGR00957 634 GNSITVHNATFTWARDlpptlngITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGS------------- 700
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 83 IGLLAQNATTPGDiTVQELVTRGRyPHQPLFTRWRKE------DADAVASAMRatgiTSLAAQSVDtLSGGQRQRAWIAM 156
Cdd:TIGR00957 701 VAYVPQQAWIQND-SLRENILFGK-ALNEKYYQQVLEacallpDLEILPSGDR----TEIGEKGVN-LSGGQKQRVSLAR 773
|
170 180
....*....|....*....|..
gi 677652373 157 VLAQETSIMLLDEPTTWLDiSH 178
Cdd:TIGR00957 774 AVYSNADIYLFDDPLSAVD-AH 794
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
33-232 |
2.22e-12 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 66.61 E-value: 2.22e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 33 GHFTAIIGPNGCGKSTLLRTLS-RLMTPV--DGHVWLDGEQIQRyasKEVARRIGLLAQNATTPGDITVQELVT---RGR 106
Cdd:TIGR00955 51 GELLAVMGSSGAGKTTLMNALAfRSPKGVkgSGSVLLNGMPIDA---KEMRAISAYVQQDDLFIPTLTVREHLMfqaHLR 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 107 YPHQpLFTRWRKEDADAVasaMRATGITSLA------AQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQI 180
Cdd:TIGR00955 128 MPRR-VTKKEKRERVDEV---LQALGLRKCAntrigvPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAY 203
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 677652373 181 DLLELLSDLNrEKGYTLAAVLHD-LNQACRYATHLIALREGNIVAQGAPKEIV 232
Cdd:TIGR00955 204 SVVQVLKGLA-QKGKTIICTIHQpSSELFELFDKIILMAEGRVAYLGSPDQAV 255
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
15-226 |
3.43e-12 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 64.09 E-value: 3.43e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 15 LGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGeqiqryaskevaRRIGLLAQNATTPG 94
Cdd:cd03220 30 GEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG------------RVSSLLGLGGGFNP 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 95 DITVQELVT-RGRyphqpLFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEpttW 173
Cdd:cd03220 98 ELTGRENIYlNGR-----LLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDE---V 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 677652373 174 L---DISHQIDLLELLSDLnREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQG 226
Cdd:cd03220 170 LavgDAAFQEKCQRRLREL-LKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
33-202 |
3.93e-12 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 65.67 E-value: 3.93e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 33 GHFTAIIGPNGCGKSTLLRTLS-RLM-TPVDGHVWLDGEQIqryaSKEVARRIGLLAQNATTPGDITVQE---LVTRGRY 107
Cdd:PLN03211 94 GEILAVLGPSGSGKSTLLNALAgRIQgNNFTGTILANNRKP----TKQILKRTGFVTQDDILYPHLTVREtlvFCSLLRL 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 108 PhQPLFTRWRKEDADAVASAMRAT--GITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLEL 185
Cdd:PLN03211 170 P-KSLTKQEKILVAESVISELGLTkcENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLT 248
|
170
....*....|....*..
gi 677652373 186 LSDLnREKGYTLAAVLH 202
Cdd:PLN03211 249 LGSL-AQKGKTIVTSMH 264
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
22-243 |
4.54e-12 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 65.74 E-value: 4.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 22 VAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQNATTPGDITVQEL 101
Cdd:TIGR00957 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNL 1380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 102 VTRGRYPHQPLFTRWRKEDADAVASAMRAtGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDIshQID 181
Cdd:TIGR00957 1381 DPFSQYSDEEVWWALELAHLKTFVSALPD-KLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDL--ETD 1457
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 677652373 182 LLELLSDLNREKGYTLAAVLHDLNQACRYaTHLIALREGNIVAQGAPKEIVTAELIekIYGL 243
Cdd:TIGR00957 1458 NLIQSTIRTQFEDCTVLTIAHRLNTIMDY-TRVIVLDKGEVAEFGAPSNLLQQRGI--FYSM 1516
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
25-175 |
8.31e-12 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 62.51 E-value: 8.31e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 25 NLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYaskevarrigllaqnattpGDITVQELVTR 104
Cdd:PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQ-------------------RDEYHQDLLYL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 105 GrypHQP----LFTRW----------RKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEP 170
Cdd:PRK13538 80 G---HQPgiktELTALenlrfyqrlhGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEP 156
|
....*
gi 677652373 171 TTWLD 175
Cdd:PRK13538 157 FTAID 161
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
22-210 |
8.56e-12 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 64.57 E-value: 8.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 22 VAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLdgeqiqryaskEVARRIGLLAQNATTPGDITVQEL 101
Cdd:TIGR03719 20 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEARP-----------QPGIKVGYLPQEPQLDPTKTVREN 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 102 VTRGRYPHQPLFTRWRK---------EDADAVASAM-------RATGITSLAAQ---------------SVDTLSGGQRQ 150
Cdd:TIGR03719 89 VEEGVAEIKDALDRFNEisakyaepdADFDKLAAEQaelqeiiDAADAWDLDSQleiamdalrcppwdaDVTKLSGGERR 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 151 RAWIAMVLAQETSIMLLDEPTTWLDiSHQIDLLEllSDLNREKGyTLAAVLHDlnqacRY 210
Cdd:TIGR03719 169 RVALCRLLLSKPDMLLLDEPTNHLD-AESVAWLE--RHLQEYPG-TVVAVTHD-----RY 219
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
13-221 |
9.22e-12 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 64.57 E-value: 9.22e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 13 LTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLdGEQIQryaskevarrIGLLAQN-AT 91
Cdd:TIGR03719 328 LTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI-GETVK----------LAYVDQSrDA 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 92 TPGDITVQELVTRGrypHQPLFTRWRKEDADAVASAMRATGitslAAQS--VDTLSGGQRQRAWIAMVLAQETSIMLLDE 169
Cdd:TIGR03719 397 LDPNKTVWEEISGG---LDIIKLGKREIPSRAYVGRFNFKG----SDQQkkVGQLSGGERNRVHLAKTLKSGGNVLLLDE 469
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 677652373 170 PTTWLDishqIDLLELLSDLNREKGYTLAAVLHD---LNqacRYATHLIALrEGN 221
Cdd:TIGR03719 470 PTNDLD----VETLRALEEALLNFAGCAVVISHDrwfLD---RIATHILAF-EGD 516
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
4-232 |
1.20e-11 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 64.21 E-value: 1.20e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 4 SVARLRG----DQLTLGY-GSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKE 78
Cdd:PRK13657 327 DLGRVKGavefDDVSFSYdNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRAS 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 79 VARRIGLLAQNATTpGDITVQELVTRGRyphqPLFTRWRKEDADAVASAM-----RATGITSLAAQSVDTLSGGQRQRAW 153
Cdd:PRK13657 407 LRRNIAVVFQDAGL-FNRSIEDNIRVGR----PDATDEEMRAAAERAQAHdfierKPDGYDTVVGERGRQLSGGERQRLA 481
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 677652373 154 IAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNreKGYTLAAVLHDLNqACRYATHLIALREGNIVAQGAPKEIV 232
Cdd:PRK13657 482 IARALLKDPPILILDEATSALDVETEAKVKAALDELM--KGRTTFIIAHRLS-TVRNADRILVFDNGRVVESGSFDELV 557
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
38-204 |
1.31e-11 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 64.06 E-value: 1.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 38 IIGPNGCGKSTLLRTLSRLMTPVDGHVwldgeqiqryaSKEVarRIGLLAQNATTPGDITVQELVtrgRYPHQPLFTRWR 117
Cdd:PRK13409 370 IVGPNGIGKTTFAKLLAGVLKPDEGEV-----------DPEL--KISYKPQYIKPDYDGTVEDLL---RSITDDLGSSYY 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 118 KEDAdavasaMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTL 197
Cdd:PRK13409 434 KSEI------IKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATA 507
|
....*..
gi 677652373 198 AAVLHDL 204
Cdd:PRK13409 508 LVVDHDI 514
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
18-204 |
1.89e-11 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 63.20 E-value: 1.89e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 18 GSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP---VDGHVWLDGEQIQRYASKEV----ARRIGLLAQNA 90
Cdd:PRK09473 27 GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAAngrIGGSATFNGREILNLPEKELnklrAEQISMIFQDP 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 91 TTP-------GDITVQELVTRGRYPHQPLFTRW-RKEDADAVASAMRATGITSlaaqsvDTLSGGQRQRAWIAMVLAQET 162
Cdd:PRK09473 107 MTSlnpymrvGEQLMEVLMLHKGMSKAEAFEESvRMLDAVKMPEARKRMKMYP------HEFSGGMRQRVMIAMALLCRP 180
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 677652373 163 SIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDL 204
Cdd:PRK09473 181 KLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL 222
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
37-244 |
2.26e-11 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 63.39 E-value: 2.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 37 AIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQiQRYAS--KEVARRIGLLAQNATTPGDITVQELVTRGRYPHQPLFT 114
Cdd:PRK11288 34 ALMGENGAGKSTLLKILSGNYQPDAGSILIDGQE-MRFASttAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIV 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 115 RwRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDiSHQID-LLELLSDLnREK 193
Cdd:PRK11288 113 N-RRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLS-AREIEqLFRVIREL-RAE 189
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 194 GYTLAAVLHDLNQACRYATHLIALREGNIVA-----QGAPKEIVTAEL----IEKIYGLR 244
Cdd:PRK11288 190 GRVILYVSHRMEEIFALCDAITVFKDGRYVAtfddmAQVDRDQLVQAMvgreIGDIYGYR 249
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
11-176 |
2.57e-11 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 63.21 E-value: 2.57e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 11 DQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLdGEQIQryaskevarrIGLLAQN- 89
Cdd:PRK11819 328 ENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GETVK----------LAYVDQSr 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 90 ATTPGDITVQELVTRGryphQPLFTRWRKE-DADAVASAMRATGitslAAQS--VDTLSGGQRQRAWIAMVLAQETSIML 166
Cdd:PRK11819 397 DALDPNKTVWEEISGG----LDIIKVGNREiPSRAYVGRFNFKG----GDQQkkVGVLSGGERNRLHLAKTLKQGGNVLL 468
|
170
....*....|
gi 677652373 167 LDEPTTWLDI 176
Cdd:PRK11819 469 LDEPTNDLDV 478
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
11-176 |
3.12e-11 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 61.36 E-value: 3.12e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 11 DQLTLGY--GSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQ 88
Cdd:cd03244 6 KNVSLRYrpNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 89 NATT-PGdiTVQE-LVTRGRYPHQPLftrWRK-EDA---DAVASamRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQET 162
Cdd:cd03244 86 DPVLfSG--TIRSnLDPFGEYSDEEL---WQAlERVglkEFVES--LPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158
|
170
....*....|....
gi 677652373 163 SIMLLDEPTTWLDI 176
Cdd:cd03244 159 KILVLDEATASVDP 172
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
17-242 |
4.31e-11 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 62.53 E-value: 4.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 17 YGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PVDGHVWLDGEQIQRYASKEVARR-IGLLAQNATTP 93
Cdd:TIGR02633 11 FGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPhgTWDGEIYWSGSPLKASNIRDTERAgIVIIHQELTLV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 94 GDITV-------QELVTRGRYPHQPLFTRWRKEdadavasAMRATGITSL-AAQSVDTLSGGQRQRAWIAMVLAQETSIM 165
Cdd:TIGR02633 91 PELSVaeniflgNEITLPGGRMAYNAMYLRAKN-------LLRELQLDADnVTRPVGDYGGGQQQLVEIAKALNKQARLL 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 677652373 166 LLDEPTTWLDISHQIDLLELLSDLNReKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTAELIEKIYG 242
Cdd:TIGR02633 164 ILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSEDDIITMMVG 239
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
24-226 |
6.31e-11 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 62.14 E-value: 6.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQ-----NATTPGDItv 98
Cdd:COG5265 375 KGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRDVTQASLRAAIGIVPQdtvlfNDTIAYNI-- 452
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 99 qelvtrgRYPhqplftRWRKEDADAVASAMRA---TGITSLAaQSVDT--------LSGGQRQRAWIAMVLAQETSIMLL 167
Cdd:COG5265 453 -------AYG------RPDASEEEVEAAARAAqihDFIESLP-DGYDTrvgerglkLSGGEKQRVAIARTLLKNPPILIF 518
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 677652373 168 DEPTTWLDiSHqidllellsdlnrekgyTLAAVLHDLNQACRYATHL-IA--------------LREGNIVAQG 226
Cdd:COG5265 519 DEATSALD-SR-----------------TERAIQAALREVARGRTTLvIAhrlstivdadeilvLEAGRIVERG 574
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1-242 |
6.57e-11 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 61.87 E-value: 6.57e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 1 MTESVARLRGdqLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMtPV---DGHVWLDGEQIQRYASK 77
Cdd:PRK13549 1 MMEYLLEMKN--ITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHgtyEGEIIFEGEELQASNIR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 78 EVARR-IGLLAQNATTPGDITVQELVTRGRYPHQPLFTRWRKEDADAvASAMRATGITSLAAQSVDTLSGGQRQRAWIAM 156
Cdd:PRK13549 78 DTERAgIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRA-QKLLAQLKLDINPATPVGNLGLGQQQLVEIAK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 157 VLAQETSIMLLDEPTTWLDISHQIDLLELLSDLnREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTAEL 236
Cdd:PRK13549 157 ALNKQARLLILDEPTASLTESETAVLLDIIRDL-KAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTEDDI 235
|
....*.
gi 677652373 237 IEKIYG 242
Cdd:PRK13549 236 ITMMVG 241
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
43-242 |
7.22e-11 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 61.96 E-value: 7.22e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 43 GCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKE-VARRIGLL---------------AQNATtpgdITVQELVTRGR 106
Cdd:COG1129 288 GAGRTELARALFGADPADSGEIRLDGKPVRIRSPRDaIRAGIAYVpedrkgeglvldlsiRENIT----LASLDRLSRGG 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 107 yphqplFTRWRKEDADAvASAMRATGI-TSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLEL 185
Cdd:COG1129 364 ------LLDRRRERALA-EEYIKRLRIkTPSPEQPVGNLSGGNQQKVVLAKWLATDPKVLILDEPTRGIDVGAKAEIYRL 436
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 186 LSDLNREkGytlAAVL---HDLNQACRYATHLIALREGNIVAQGAPKEIVTAELIEKIYG 242
Cdd:COG1129 437 IRELAAE-G---KAVIvisSELPELLGLSDRILVMREGRIVGELDREEATEEAIMAAATG 492
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
33-226 |
9.19e-11 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 61.80 E-value: 9.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 33 GHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQR---YASKEVARRIGLLAQNA-------TTPGDITVQELV 102
Cdd:PRK10261 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTlspGKLQALRRDIQFIFQDPyasldprQTVGDSIMEPLR 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 103 TRGRYPHqplftrwrKEDADAVASAMRATGITSLAA-QSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQID 181
Cdd:PRK10261 430 VHGLLPG--------KAAAARVAWLLERVGLLPEHAwRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQ 501
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 677652373 182 LLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQG 226
Cdd:PRK10261 502 IINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIG 546
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
13-228 |
1.22e-10 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 59.35 E-value: 1.22e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 13 LTLGYGSY--TVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQNA 90
Cdd:cd03369 12 LSVRYAPDlpPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 91 TTPGDITVQELVTRGRYPHQPLFTrwrkedadavasAMRATGitslaaqSVDTLSGGQRQRAWIAMVLAQETSIMLLDEP 170
Cdd:cd03369 92 TLFSGTIRSNLDPFDEYSDEEIYG------------ALRVSE-------GGLNLSQGQRQLLCLARALLKRPRVLVLDEA 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 171 TTWLDisHQIDllELLSDLNRE--KGYTLAAVLHDLNQACRYAtHLIALREGNIVAQGAP 228
Cdd:cd03369 153 TASID--YATD--ALIQKTIREefTNSTILTIAHRLRTIIDYD-KILVMDAGEVKEYDHP 207
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
27-257 |
1.29e-10 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 61.18 E-value: 1.29e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 27 NVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDG-------HVW-LDGEQIQRYASKEVARR-IGLLAQNATTPGDiT 97
Cdd:PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGerqsqfsHITrLSFEQLQKLVSDEWQRNnTDMLSPGEDDTGR-T 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 98 VQELVtrgryphqplftrwRKEDADAVASAMRAT--GITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLD 175
Cdd:PRK10938 102 TAEII--------------QDEVKDPARCEQLAQqfGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLD 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 176 ISHQIDLLELLSDLNReKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTAELI------EKIYGLRCMIID 249
Cdd:PRK10938 168 VASRQQLAELLASLHQ-SGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQALVaqlahsEQLEGVQLPEPD 246
|
....*...
gi 677652373 250 DPVAGTPL 257
Cdd:PRK10938 247 EPSARHAL 254
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
37-209 |
1.76e-10 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 59.41 E-value: 1.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 37 AIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVA----RRIGLLAQNATTPGDITVQELVT-----RGRY 107
Cdd:PRK10584 40 ALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAklraKHVGFVFQSFMLIPTLNALENVElpallRGES 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 108 PHQPlftrwRKEDADAVASAMRATGITSLAAQsvdtLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLS 187
Cdd:PRK10584 120 SRQS-----RNGAKALLEQLGLGKRLDHLPAQ----LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLF 190
|
170 180
....*....|....*....|..
gi 677652373 188 DLNREKGYTLAAVLHDLNQACR 209
Cdd:PRK10584 191 SLNREHGTTLILVTHDLQLAAR 212
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
21-203 |
1.91e-10 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 60.73 E-value: 1.91e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 21 TVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVwldgeqiqRYASK-EVA----RRIGLlaqnatTPgD 95
Cdd:PRK11147 333 QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI--------HCGTKlEVAyfdqHRAEL------DP-E 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 96 ITV--------QELVTRGRYPH-----QplftrwrkedaDAVASAMRATgitslaaQSVDTLSGGQRQRAWIAMVLAQET 162
Cdd:PRK11147 398 KTVmdnlaegkQEVMVNGRPRHvlgylQ-----------DFLFHPKRAM-------TPVKALSGGERNRLLLARLFLKPS 459
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 677652373 163 SIMLLDEPTTWLDishqIDLLELLSDLNREKGYTLAAVLHD 203
Cdd:PRK11147 460 NLLILDEPTNDLD----VETLELLEELLDSYQGTVLLVSHD 496
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
25-242 |
2.52e-10 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 60.13 E-value: 2.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 25 NLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARR-IGLLAQNATTPGDITVQELVT 103
Cdd:PRK10982 16 NVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENgISMVHQELNLVLQRSVMDNMW 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 104 RGRYPHQPLFTRWRK--EDADAVASAMratGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWL---DISH 178
Cdd:PRK10982 96 LGRYPTKGMFVDQDKmyRDTKAIFDEL---DIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLtekEVNH 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 677652373 179 QIDLLELLsdlnREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTAELIEKIYG 242
Cdd:PRK10982 173 LFTIIRKL----KERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMDKIIAMMVG 232
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
21-202 |
2.56e-10 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 58.82 E-value: 2.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 21 TVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLM--TPVDGHVWLDGEQIqryaskevarrigllaqnattPGDITV 98
Cdd:COG2401 44 YVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALkgTPVAGCVDVPDNQF---------------------GREASL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 99 QELVtrgryphqplftrWRKEDADAVASAMRATGITSLAA--QSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDI 176
Cdd:COG2401 103 IDAI-------------GRKGDFKDAVELLNAVGLSDAVLwlRRFKELSTGQKFRFRLALLLAERPKLLVIDEFCSHLDR 169
|
170 180
....*....|....*....|....*.
gi 677652373 177 SHQIDLLELLSDLNREKGYTLAAVLH 202
Cdd:COG2401 170 QTAKRVARNLQKLARRAGITLVVATH 195
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
24-236 |
3.61e-10 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 59.03 E-value: 3.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQ----RYASKevarRIGLLAQNATTpgditvq 99
Cdd:PRK15112 30 KPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHfgdySYRSQ----RIRMIFQDPST------- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 100 ELVTRGRYpHQPLFTRWR-------KEDADAVASAMRATGI-TSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPT 171
Cdd:PRK15112 99 SLNPRQRI-SQILDFPLRlntdlepEQREKQIIETLRQVGLlPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEAL 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 677652373 172 TWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTAEL 236
Cdd:PRK15112 178 ASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASPL 242
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
24-228 |
3.76e-10 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 58.78 E-value: 3.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLL-----RTLSRLMTpvdghvwLDGEQIQRYASKEVARRIGLLAQ---------- 88
Cdd:cd03271 12 KNIDVDIPLGVLTCVTGVSGSGKSSLIndtlyPALARRLH-------LKKEQPGNHDRIEGLEHIDKVIVidqspigrtp 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 89 ---NATTPGDIT-VQEL---VTRG-RYPHQPLFTRWR-KEDADAVA-SAMRA----TGITSLAA---------------- 138
Cdd:cd03271 85 rsnPATYTGVFDeIRELfceVCKGkRYNRETLEVRYKgKSIADVLDmTVEEAleffENIPKIARklqtlcdvglgyiklg 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 139 QSVDTLSGGQRQRAWIAMVLAQETS---IMLLDEPTTWL---DISHQIDLLELLSDlnreKGYTLAAVLHDLNQAcRYAT 212
Cdd:cd03271 165 QPATTLSGGEAQRIKLAKELSKRSTgktLYILDEPTTGLhfhDVKKLLEVLQRLVD----KGNTVVVIEHNLDVI-KCAD 239
|
250 260
....*....|....*....|..
gi 677652373 213 HLIAL------REGNIVAQGAP 228
Cdd:cd03271 240 WIIDLgpeggdGGGQVVASGTP 261
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
33-175 |
3.82e-10 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 60.12 E-value: 3.82e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 33 GHFTAIIGPNGCGKSTLLRTLS-RLMTPV--DGHVWLDGEQIQryasKEVARRIGLLAQNATTPGDITVQELVTRGRYPH 109
Cdd:TIGR00956 789 GTLTALMGASGAGKTTLLNVLAeRVTTGVitGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLR 864
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 677652373 110 QPLFTRwRKEDADAVASAMRATGITSLAAQSVDT----LSGGQRQRAWIAMVL-AQETSIMLLDEPTTWLD 175
Cdd:TIGR00956 865 QPKSVS-KSEKMEYVEEVIKLLEMESYADAVVGVpgegLNVEQRKRLTIGVELvAKPKLLLFLDEPTSGLD 934
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
19-175 |
4.09e-10 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 57.64 E-value: 4.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 19 SYTVA---------KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLS--RLMTPVDGHVWLDGEQIQryasKEVARRIGLLA 87
Cdd:cd03232 10 NYTVPvkggkrqllNNISGYVKPGTLTALMGESGAGKTTLLDVLAgrKTAGVITGEILINGRPLD----KNFQRSTGYVE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 88 QNATTPGDITVQELVtrgryphqpLFTRWrkedadavasaMRAtgitslaaqsvdtLSGGQRQRAWIAMVLAQETSIMLL 167
Cdd:cd03232 86 QQDVHSPNLTVREAL---------RFSAL-----------LRG-------------LSVEQRKRLTIGVELAAKPSILFL 132
|
....*...
gi 677652373 168 DEPTTWLD 175
Cdd:cd03232 133 DEPTSGLD 140
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
13-214 |
4.25e-10 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 59.52 E-value: 4.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 13 LTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVwldgeqiqryaSKEVARRIGLLAQNATT 92
Cdd:PRK15064 7 ITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNV-----------SLDPNERLGKLRQDQFA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 93 PGDITVQELVTRGrypHQPLftrWR-KEDADAVAS--------AMRAT----------GITSlAAQSVDTLSG------- 146
Cdd:PRK15064 76 FEEFTVLDTVIMG---HTEL---WEvKQERDRIYAlpemseedGMKVAdlevkfaemdGYTA-EARAGELLLGvgipeeq 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 147 ----------GQRQRAWIAMVLAQETSIMLLDEPTTWLDIsHQIDLLEllSDLNrEKGYTLAAVLHD---LNQACryaTH 213
Cdd:PRK15064 149 hyglmsevapGWKLRVLLAQALFSNPDILLLDEPTNNLDI-NTIRWLE--DVLN-ERNSTMIIISHDrhfLNSVC---TH 221
|
.
gi 677652373 214 L 214
Cdd:PRK15064 222 M 222
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
24-204 |
4.57e-10 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 57.33 E-value: 4.57e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSrlmtpvdghvwldgeqiqrYASKEvARRIGLLAQNATTPGdITVQELvt 103
Cdd:cd03238 12 QNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL-------------------YASGK-ARLISFLPKFSRNKL-IFIDQL-- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 104 rgryphqplftrwrkedadavaSAMRATGITSLA-AQSVDTLSGGQRQRAWIAMVLAQET--SIMLLDEPTTWLdisHQI 180
Cdd:cd03238 69 ----------------------QFLIDVGLGYLTlGQKLSTLSGGELQRVKLASELFSEPpgTLFILDEPSTGL---HQQ 123
|
170 180
....*....|....*....|....*.
gi 677652373 181 DLLELLSDLNR--EKGYTLAAVLHDL 204
Cdd:cd03238 124 DINQLLEVIKGliDLGNTVILIEHNL 149
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
24-189 |
7.13e-10 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 58.91 E-value: 7.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRiGL--LAQNATTPG---DITV 98
Cdd:PRK15439 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLAR-GLvyLPEDRQSSGlylDAPL 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 99 QELVTRGRYPHQPLFTRWRKEDAdAVASAMRATGIT-SLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDIS 177
Cdd:PRK15439 359 AWNVCALTHNRRGFWIKPARENA-VLERYRRALNIKfNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437
|
170
....*....|..
gi 677652373 178 HQIDLLELLSDL 189
Cdd:PRK15439 438 ARNDIYQLIRSI 449
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
24-231 |
1.06e-09 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 58.49 E-value: 1.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLL---------RTLSRLMTPVDGHVWLDG-EQIQR-------------------- 73
Cdd:TIGR00630 625 KNITVSIPLGLFTCITGVSGSGKSTLIndtlypalaNRLNGAKTVPGRYTSIEGlEHLDKvihidqspigrtprsnpaty 704
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 74 ----------YASKEVARRIGLLAQNAT--TPG--------------------DITVQELVTRG-RYPHQPLFTRWRK-- 118
Cdd:TIGR00630 705 tgvfdeirelFAETPEAKVRGYTPGRFSfnVKGgrceacqgdgvikiemhflpDVYVPCEVCKGkRYNRETLEVKYKGkn 784
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 119 ---------EDA----DAVASAMRA------TGITSLA-AQSVDTLSGGQRQRawiaMVLAQETS-------IMLLDEPT 171
Cdd:TIGR00630 785 iadvldmtvEEAyeffEAVPSISRKlqtlcdVGLGYIRlGQPATTLSGGEAQR----IKLAKELSkrstgrtLYILDEPT 860
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 677652373 172 TWLdisHQIDLLELLSDLNR--EKGYTLAAVLHDLNqACRYATHLIAL------REGNIVAQGAPKEI 231
Cdd:TIGR00630 861 TGL---HFDDIKKLLEVLQRlvDKGNTVVVIEHNLD-VIKTADYIIDLgpeggdGGGTVVASGTPEEV 924
|
|
| sufC |
TIGR01978 |
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six ... |
24-194 |
2.28e-09 |
|
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 273907 [Multi-domain] Cd Length: 243 Bit Score: 56.11 E-value: 2.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTL----SRLMTpvDGHVWLDGEQIQRYASKEVARR-IGLLAQNAT-TPGdIT 97
Cdd:TIGR01978 17 KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIaghpSYEVT--SGTILFKGQDLLELEPDERARAgLFLAFQYPEeIPG-VS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 98 VQELV------TRGRYPHQPLFTR-WRKEDADAVAS-AMRAtgitSLAAQSVDT-LSGGQRQRAWIAMVLAQETSIMLLD 168
Cdd:TIGR01978 94 NLEFLrsalnaRRSARGEEPLDLLdFEKLLKEKLALlDMDE----EFLNRSVNEgFSGGEKKRNEILQMALLEPKLAILD 169
|
170 180
....*....|....*....|....*..
gi 677652373 169 EPTTWLDishqIDLLELLSD-LNREKG 194
Cdd:TIGR01978 170 EIDSGLD----IDALKIVAEgINRLRE 192
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
5-231 |
2.80e-09 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 57.44 E-value: 2.80e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 5 VARLRGdqLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLS---RLMTpvdGHVW-LDGEQIQRYASKEVA 80
Cdd:NF033858 1 VARLEG--VSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAgarKIQQ---GRVEvLGGDMADARHRRAVC 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 81 RRIGLLAQnattpG-------DITVQE-LVTRGRyphqpLFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRA 152
Cdd:NF033858 76 PRIAYMPQ-----GlgknlypTLSVFEnLDFFGR-----LFGQDAAERRRRIDELLRATGLAPFADRPAGKLSGGMKQKL 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 153 WIAMVLAQETSIMLLDEPTT----------WldishqidllELLSDLNREK-GYTlaaVLhdlnqacrYAT--------- 212
Cdd:NF033858 146 GLCCALIHDPDLLILDEPTTgvdplsrrqfW----------ELIDRIRAERpGMS---VL--------VATaymeeaerf 204
|
250 260
....*....|....*....|
gi 677652373 213 -HLIALREGNIVAQGAPKEI 231
Cdd:NF033858 205 dWLVAMDAGRVLATGTPAEL 224
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
24-202 |
3.66e-09 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 54.47 E-value: 3.66e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHvwldgeqIQRYASKEVArrigLLAQnattpgditvqelvt 103
Cdd:cd03223 18 KDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGR-------IGMPEGEDLL----FLPQ--------------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 104 rgryphQPLFTRwrkedadavasamratgiTSLAAQSV----DTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQ 179
Cdd:cd03223 72 ------RPYLPL------------------GTLREQLIypwdDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESE 127
|
170 180
....*....|....*....|...
gi 677652373 180 IDLLELLsdlnREKGYTLAAVLH 202
Cdd:cd03223 128 DRLYQLL----KELGITVISVGH 146
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
144-234 |
5.57e-09 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 55.68 E-value: 5.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 144 LSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIV 223
Cdd:COG4170 159 LTEGECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYCGQTV 238
|
90
....*....|.
gi 677652373 224 AQGAPKEIVTA 234
Cdd:COG4170 239 ESGPTEQILKS 249
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
43-237 |
8.10e-09 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 55.80 E-value: 8.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 43 GCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVaRRIGLlaqnATTP---------GDITVQELVTRGRYPHQPL- 112
Cdd:COG3845 294 GNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRER-RRLGV----AYIPedrlgrglvPDMSVAENLILGRYRRPPFs 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 113 ---FTRWRK--EDADAVASAM--RATGITSLAAqsvdTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDIS-----HQI 180
Cdd:COG3845 369 rggFLDRKAirAFAEELIEEFdvRTPGPDTPAR----SLSGGNQQKVILARELSRDPKLLIAAQPTRGLDVGaiefiHQR 444
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 181 dLLELlsdlnREKGytlAAVL---HDLNQACRYATHLIALREGNIVAQGAPKEiVTAELI 237
Cdd:COG3845 445 -LLEL-----RDAG---AAVLlisEDLDEILALSDRIAVMYEGRIVGEVPAAE-ATREEI 494
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
24-242 |
8.26e-09 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 55.94 E-value: 8.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWldgeqiqryaskeVARRIGLLAQ-----NATTPGDItv 98
Cdd:PTZ00243 677 RDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW-------------AERSIAYVPQqawimNATVRGNI-- 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 99 qelvtrgryphqpLFtrWRKEDADAVASAMRATGITSLAAQ---SVDT--------LSGGQRQRAWIAMVLAQETSIMLL 167
Cdd:PTZ00243 742 -------------LF--FDEEDAARLADAVRVSQLEADLAQlggGLETeigekgvnLSGGQKARVSLARAVYANRDVYLL 806
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 677652373 168 DEPTTWLD--ISHQIdLLELLsdLNREKGYTLAAVLHDLNQACRyATHLIALREGNIVAQGAPKEIVTAELIEKIYG 242
Cdd:PTZ00243 807 DDPLSALDahVGERV-VEECF--LGALAGKTRVLATHQVHVVPR-ADYVVALGDGRVEFSGSSADFMRTSLYATLAA 879
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
8-232 |
9.85e-09 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 55.58 E-value: 9.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSrlmtPVDGHVWLDGEQIQRYASKEVARRIGL-- 85
Cdd:TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLR----GMDQYEPTSGRIIYHVALCEKCGYVERps 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 86 -LAQNATTPGDiTVQELVTRGRYPHQPLFTRWRKEDA----------------DAVASAMRATG---------------- 132
Cdd:TIGR03269 77 kVGEPCPVCGG-TLEPEEVDFWNLSDKLRRRIRKRIAimlqrtfalygddtvlDNVLEALEEIGyegkeavgravdliem 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 133 ------ITSLAAQsvdtLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQ 206
Cdd:TIGR03269 156 vqlshrITHIARD----LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV 231
|
250 260
....*....|....*....|....*.
gi 677652373 207 ACRYATHLIALREGNIVAQGAPKEIV 232
Cdd:TIGR03269 232 IEDLSDKAIWLENGEIKEEGTPDEVV 257
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
138-231 |
1.41e-08 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 55.02 E-value: 1.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 138 AQSVDTLSGGQRQRAWIAMVL-AQETSIM-LLDEPTTWLdisHQIDLLELLSDLN--REKGYTLAAVLHDlNQACRYATH 213
Cdd:TIGR00630 483 SRAAGTLSGGEAQRIRLATQIgSGLTGVLyVLDEPSIGL---HQRDNRRLINTLKrlRDLGNTLIVVEHD-EDTIRAADY 558
|
90 100
....*....|....*....|....
gi 677652373 214 LIAL------REGNIVAQGAPKEI 231
Cdd:TIGR00630 559 VIDIgpgageHGGEVVASGTPEEI 582
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
26-224 |
1.82e-08 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 54.80 E-value: 1.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 26 LNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRyaskevarrigllaqnattpgditvqelVTRG 105
Cdd:COG4615 351 IDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPVTA----------------------------DNRE 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 106 RY----------PHqpLFTRW---RKEDADAVASA----MRATGITSLAAQSVDT--LSGGQRQRawIAMVLA--QETSI 164
Cdd:COG4615 403 AYrqlfsavfsdFH--LFDRLlglDGEADPARAREllerLELDHKVSVEDGRFSTtdLSQGQRKR--LALLVAllEDRPI 478
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 677652373 165 MLLDEpttWldISHQ------IDLLELLSDLnREKGYTLAAVLHDlnqaCRY---ATHLIALREGNIVA 224
Cdd:COG4615 479 LVFDE---W--AADQdpefrrVFYTELLPEL-KARGKTVIAISHD----DRYfdlADRVLKMDYGKLVE 537
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
24-201 |
1.90e-08 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 52.82 E-value: 1.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKE-VARRIGLLaqnattPGDitvqelv 102
Cdd:cd03215 17 RDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDaIRAGIAYV------PED------- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 103 tRGRyphQPLFTRWrkedadavaSAMRATGITSLaaqsvdtLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDL 182
Cdd:cd03215 84 -RKR---EGLVLDL---------SVAENIALSSL-------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEI 143
|
170
....*....|....*....
gi 677652373 183 LELLSDLnREKGytlAAVL 201
Cdd:cd03215 144 YRLIREL-ADAG---KAVL 158
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
26-176 |
2.22e-08 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 52.93 E-value: 2.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 26 LNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRyasKEVARRIGLLAQNATTPGDITVQELV--- 102
Cdd:PRK13543 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATR---GDRSRFMAYLGHLPGLKADLSTLENLhfl 106
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 677652373 103 --TRGRYPHQplftrwrkedadAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDI 176
Cdd:PRK13543 107 cgLHGRRAKQ------------MPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDL 170
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
38-210 |
3.73e-08 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 53.58 E-value: 3.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 38 IIGPNGCGKSTLLRTLSRLMTPVDGHVWL-DGeqiqryaskevaRRIGLLAQNATTPGDITVQELVTRGRYPHQPLFTRW 116
Cdd:PRK11819 38 VLGLNGAGKSTLLRIMAGVDKEFEGEARPaPG------------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRF 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 117 RK---------EDADAVASAM-------RATGITSLAAQ---------------SVDTLSGGQRQRAWIAMVLAQETSIM 165
Cdd:PRK11819 106 NEiyaayaepdADFDALAAEQgelqeiiDAADAWDLDSQleiamdalrcppwdaKVTKLSGGERRRVALCRLLLEKPDML 185
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 677652373 166 LLDEPTTWLDiSHQIDLLEllSDLNREKGyTLAAVLHDlnqacRY 210
Cdd:PRK11819 186 LLDEPTNHLD-AESVAWLE--QFLHDYPG-TVVAVTHD-----RY 221
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
17-240 |
3.98e-08 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 53.52 E-value: 3.98e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 17 YGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGeQIQRYASKEVARRIG--LLAQNATTPG 94
Cdd:PRK15439 21 YSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGG-NPCARLTPAKAHQLGiyLVPQEPLLFP 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 95 DITVQELVTRGRYPHQplftrwrkEDADAVASAMRATGIT-SLAAQSvDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTW 173
Cdd:PRK15439 100 NLSVKENILFGLPKRQ--------ASMQKMKQLLAALGCQlDLDSSA-GSLEVADRQIVEILRGLMRDSRILILDEPTAS 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 677652373 174 LDISHQIDLLELLSDLnREKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTAELIEKI 240
Cdd:PRK15439 171 LTPAETERLFSRIREL-LAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDDIIQAI 236
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
25-175 |
5.36e-08 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 51.80 E-value: 5.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 25 NLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYAsKEVARRIGllaQNATTPGDITVQELVtr 104
Cdd:PRK13541 18 DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA-KPYCTYIG---HNLGLKLEMTVFENL-- 91
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 677652373 105 gryphqplfTRWRK--EDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLD 175
Cdd:PRK13541 92 ---------KFWSEiyNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLS 155
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
35-203 |
5.50e-08 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 51.84 E-value: 5.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 35 FTAIIGPNGCGKSTLLRTLSrlmtpvdghVWLDGEQIQRYaskevarRIGLLAQNATTPGDITVQ-ELVTRGRYPHQPLF 113
Cdd:cd03240 24 LTLIVGQNGAGKTTIIEALK---------YALTGELPPNS-------KGGAHDPKLIREGEVRAQvKLAFENANGKKYTI 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 114 TRwrkeDADAVASAM--RATGITSLAAQSVDTLSGGQRQ------RAWIAMVLAQETSIMLLDEPTTWLDISH-QIDLLE 184
Cdd:cd03240 88 TR----SLAILENVIfcHQGESNWPLLDMRGRCSGGEKVlasliiRLALAETFGSNCGILALDEPTTNLDEENiEESLAE 163
|
170
....*....|....*....
gi 677652373 185 LLSDLNREKGYTLAAVLHD 203
Cdd:cd03240 164 IIEERKSQKNFQLIVITHD 182
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
8-220 |
6.30e-08 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 53.48 E-value: 6.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGY-GSYTVAKN-LNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASkEVARRIGL 85
Cdd:TIGR01257 1938 LRLNELTKVYsGTSSPAVDrLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNIS-DVHQNMGY 2016
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 86 LAQNATtpgditVQELVTrGRyPHQPLFTRWR---KEDADAVAS-AMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQE 161
Cdd:TIGR01257 2017 CPQFDA------IDDLLT-GR-EHLYLYARLRgvpAEEIEKVANwSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGC 2088
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 677652373 162 TSIMLLDEPTTWLDISHQIDLLELLSDLNREkGYTLAAVLHDLNQACRYATHLIALREG 220
Cdd:TIGR01257 2089 PPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMVKG 2146
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
22-239 |
7.44e-08 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 53.11 E-value: 7.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 22 VAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWL-DGEQIQRYASKEVARRIGLLAQNA-----TTPGD 95
Cdd:PTZ00265 400 IYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIInDSHNLKDINLKWWRSKIGVVSQDPllfsnSIKNN 479
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 96 I-----TVQELVTRGRYPHQPLFTRWRKEDADAVASAmRATGITSLAAQSVDT--------------------------- 143
Cdd:PTZ00265 480 IkyslySLKDLEALSNYYNEDGNDSQENKNKRNSCRA-KCAGDLNDMSNTTDSneliemrknyqtikdsevvdvskkvli 558
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 144 ---------------------LSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLH 202
Cdd:PTZ00265 559 hdfvsalpdkyetlvgsnaskLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAH 638
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 677652373 203 DLNqACRYATHLIAL--RE-GNIVAQGAPKEIVTAELIEK 239
Cdd:PTZ00265 639 RLS-TIRYANTIFVLsnRErGSTVDVDIIGEDPTKDNKEN 677
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
7-240 |
8.20e-08 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 52.67 E-value: 8.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 7 RLRGDQLTLGYGSYTVaKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQryASKEVARRigll 86
Cdd:PRK10522 324 ELRNVTFAYQDNGFSV-GPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVT--AEQPEDYR---- 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 87 AQNATTPGDItvqelvtrgrypHqpLFTRWRKEDADAVASAMRATGITSLAAQS---------VDT-LSGGQRQRAWIAM 156
Cdd:PRK10522 397 KLFSAVFTDF------------H--LFDQLLGPEGKPANPALVEKWLERLKMAHkleledgriSNLkLSKGQKKRLALLL 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 157 VLAQETSIMLLDEpttW-LDISHQI------DLLELLsdlnREKGYTLAAVLHD---LNQACRyathLIALREGNIVA-Q 225
Cdd:PRK10522 463 ALAEERDILLLDE---WaADQDPHFrrefyqVLLPLL----QEMGKTIFAISHDdhyFIHADR----LLEMRNGQLSElT 531
|
250
....*....|....*
gi 677652373 226 GAPKEIVTAELIEKI 240
Cdd:PRK10522 532 GEERDAASRDAVART 546
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
19-226 |
8.20e-08 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 52.80 E-value: 8.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 19 SYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLS----RLMTPVDGHVWLDG---EQIQRYASKEVArrigLLAQNAT 91
Cdd:TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIAsntdGFHIGVEGVITYDGitpEEIKKHYRGDVV----YNAETDV 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 92 TPGDITVQE---LVTRGRYPHQPLFTRWRKEDADAVAS-AMRATGI-----TSLAAQSVDTLSGGQRQRAWIAMVLAQET 162
Cdd:TIGR00956 149 HFPHLTVGEtldFAARCKTPQNRPDGVSREEYAKHIADvYMATYGLshtrnTKVGNDFVRGVSGGERKRVSIAEASLGGA 228
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 677652373 163 SIMLLDEPTTWLDIShqiDLLELLSDLNREKGYTLAAVLHDLNQACRYATHL----IALREGNIVAQG 226
Cdd:TIGR00956 229 KIQCWDNATRGLDSA---TALEFIRALKTSANILDTTPLVAIYQCSQDAYELfdkvIVLYEGYQIYFG 293
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
139-232 |
9.91e-08 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 52.72 E-value: 9.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 139 QSVDTLSGGQRQRAWIAMVLAQETS---IMLLDEPTTWL---DISHqidLLELLSDLnREKGYTLAAVLHDLNqACRYAT 212
Cdd:COG0178 822 QPATTLSGGEAQRVKLASELSKRSTgktLYILDEPTTGLhfhDIRK---LLEVLHRL-VDKGNTVVVIEHNLD-VIKTAD 896
|
90 100
....*....|....*....|....*.
gi 677652373 213 HLIAL------REGNIVAQGAPKEIV 232
Cdd:COG0178 897 WIIDLgpeggdGGGEIVAEGTPEEVA 922
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
23-207 |
1.08e-07 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 50.44 E-value: 1.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 23 AKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTpvdghvwldGEQIQRYASKEVARRIGLLAQNATtpgditvqelv 102
Cdd:cd03227 11 FVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALG---------GAQSATRRRSGVKAGCIVAAVSAE----------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 103 trgryphqplftrwrkedadavasamratgitslAAQSVDTLSGGQRQRAWIAMVLA----QETSIMLLDEPTTWLDISH 178
Cdd:cd03227 71 ----------------------------------LIFTRLQLSGGEKELSALALILAlaslKPRPLYILDEIDRGLDPRD 116
|
170 180
....*....|....*....|....*....
gi 677652373 179 QIDLLELLSDLnREKGYTLAAVLHDLNQA 207
Cdd:cd03227 117 GQALAEAILEH-LVKGAQVIVITHLPELA 144
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
17-204 |
1.11e-07 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 50.65 E-value: 1.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 17 YGSYTVAKNLNVsIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIqryaskevarrigllaqnattpgdi 96
Cdd:cd03222 10 YGVFFLLVELGV-VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITP------------------------- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 97 tvqelvtrgryphqplftrwrkedadavasamratgitSLAAQSVDtLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDI 176
Cdd:cd03222 64 --------------------------------------VYKPQYID-LSGGELQRVAIAAALLRNATFYLFDEPSAYLDI 104
|
170 180
....*....|....*....|....*...
gi 677652373 177 SHQIDLLELLSDLNREKGYTLAAVLHDL 204
Cdd:cd03222 105 EQRLNAARAIRRLSEEGKKTALVVEHDL 132
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
13-180 |
1.59e-07 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 52.22 E-value: 1.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 13 LTLGY--GSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTpVDGHVWLDGEQIQRYASKEVARRIGLLAQNA 90
Cdd:TIGR01271 1223 LTAKYteAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKV 1301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 91 ttpgditvqeLVTRGRY-----PHQplftRWRKEDADAVASAMratGITSLAAQSVD-----------TLSGGQRQRAWI 154
Cdd:TIGR01271 1302 ----------FIFSGTFrknldPYE----QWSDEEIWKVAEEV---GLKSVIEQFPDkldfvlvdggyVLSNGHKQLMCL 1364
|
170 180
....*....|....*....|....*..
gi 677652373 155 AMVLAQETSIMLLDEPTTWLD-ISHQI 180
Cdd:TIGR01271 1365 ARSILSKAKILLLDEPSAHLDpVTLQI 1391
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
24-226 |
1.68e-07 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 50.34 E-value: 1.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP---VDGHVWLDGEQIQRYASKevarrigllaqnatTPGDI--TV 98
Cdd:cd03233 24 KDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGnvsVEGDIHYNGIPYKEFAEK--------------YPGEIiyVS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 99 QELVtrgrypHQPLFTRwrKEDADAVASAmratgitsLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISH 178
Cdd:cd03233 90 EEDV------HFPTLTV--RETLDFALRC--------KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSST 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 677652373 179 QIDLLELLSDLNRE-KGYTLAAVLhdlnQACRYATHL----IALREGNIVAQG 226
Cdd:cd03233 154 ALEILKCIRTMADVlKTTTFVSLY----QASDEIYDLfdkvLVLYEGRQIYYG 202
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
21-233 |
2.00e-07 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 51.64 E-value: 2.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 21 TVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQNATTPGDiTVQE 100
Cdd:PRK10789 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVAN 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 101 LVTRGRyphqPLFTRWRKEDADAVASAMRatGITSLAaQSVDT--------LSGGQRQRAWIAMVLAQETSIMLLDEPTT 172
Cdd:PRK10789 408 NIALGR----PDATQQEIEHVARLASVHD--DILRLP-QGYDTevgergvmLSGGQKQRISIARALLLNAEILILDDALS 480
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 677652373 173 WLD--ISHQIdllelLSDLNR-EKGYTLAAVLHDLNqACRYATHLIALREGNIVAQGAPKEIVT 233
Cdd:PRK10789 481 AVDgrTEHQI-----LHNLRQwGEGRTVIISAHRLS-ALTEASEILVMQHGHIAQRGNHDQLAQ 538
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
144-234 |
2.42e-07 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 50.96 E-value: 2.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 144 LSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALREGNIV 223
Cdd:PRK15093 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTV 238
|
90
....*....|.
gi 677652373 224 AQGAPKEIVTA 234
Cdd:PRK15093 239 ETAPSKELVTT 249
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
139-235 |
3.62e-07 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 50.84 E-value: 3.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 139 QSVDTLSGGQRQRawiaMVLAQETS-------IMLLDEPTTWL---DISHqidLLELLSDLnREKGYTLAAVLHDLNqAC 208
Cdd:PRK00349 826 QPATTLSGGEAQR----VKLAKELSkrstgktLYILDEPTTGLhfeDIRK---LLEVLHRL-VDKGNTVVVIEHNLD-VI 896
|
90 100 110
....*....|....*....|....*....|...
gi 677652373 209 RYATHLIAL------REGNIVAQGAPKEIVTAE 235
Cdd:PRK00349 897 KTADWIIDLgpeggdGGGEIVATGTPEEVAKVE 929
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
1-245 |
3.68e-07 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 51.00 E-value: 3.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 1 MTESVARLRGDQLTlGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP---VDGHVWLDGEQIQRYASK 77
Cdd:PLN03140 160 IAESALGMLGINLA-KKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPslkVSGEITYNGYRLNEFVPR 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 78 EVARRIgllAQNATTPGDITVQE-LVTRGRYphQPLFTRW--------RKEDADAVASA-----MRATgitslAAQSVDT 143
Cdd:PLN03140 239 KTSAYI---SQNDVHVGVMTVKEtLDFSARC--QGVGTRYdllselarREKDAGIFPEAevdlfMKAT-----AMEGVKS 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 144 ----------------------------LSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNRekgY 195
Cdd:PLN03140 309 slitdytlkilgldickdtivgdemirgISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVH---L 385
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 677652373 196 TLAAVLHDLNQACRYATHL----IALREGNIVAQGaPKEIVTaELIEKiYGLRC 245
Cdd:PLN03140 386 TEATVLMSLLQPAPETFDLfddiILLSEGQIVYQG-PRDHIL-EFFES-CGFKC 436
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
25-203 |
7.40e-07 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 49.78 E-value: 7.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 25 NLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEvarrigllaqnatTPG-DITVQELVT 103
Cdd:PRK10636 19 NATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQE-------------TPAlPQPALEYVI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 104 RG----RYPHQPLFTRWRKEDADAVAS------AMRATGITSLAA--------------QSVDTLSGGQRQRAWIAMVLA 159
Cdd:PRK10636 86 DGdreyRQLEAQLHDANERNDGHAIATihgkldAIDAWTIRSRAAsllhglgfsneqleRPVSDFSGGWRMRLNLAQALI 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 677652373 160 QETSIMLLDEPTTWLDISHQIDLLELLsdlnreKGY--TLAAVLHD 203
Cdd:PRK10636 166 CRSDLLLLDEPTNHLDLDAVIWLEKWL------KSYqgTLILISHD 205
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
43-225 |
7.90e-07 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 49.52 E-value: 7.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 43 GCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARR-IGLLAQNATTPGDI---TVQE-LVTRGRYPHQPLFT--- 114
Cdd:PRK11288 289 GAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAgIMLCPEDRKAEGIIpvhSVADnINISARRHHLRAGClin 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 115 -RWRKEDADAVASAMRATgiTSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLnREK 193
Cdd:PRK11288 369 nRWEAENADRFIRSLNIK--TPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYEL-AAQ 445
|
170 180 190
....*....|....*....|....*....|..
gi 677652373 194 GYTLAAVLHDLNQACRYATHLIALREGNIVAQ 225
Cdd:PRK11288 446 GVAVLFVSSDLPEVLGVADRIVVMREGRIAGE 477
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
13-180 |
9.82e-07 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 48.70 E-value: 9.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 13 LTLGY--GSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTpVDGHVWLDGEQIQRYASKEVARRIGLLAQNA 90
Cdd:cd03289 8 LTAKYteGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 91 TTPGDITVQELVTRGRYPHQPLftrWRKEDADAVASAMRATGiTSLAAQSVD---TLSGGQRQRAWIAMVLAQETSIMLL 167
Cdd:cd03289 87 FIFSGTFRKNLDPYGKWSDEEI---WKVAEEVGLKSVIEQFP-GQLDFVLVDggcVLSHGHKQLMCLARSVLSKAKILLL 162
|
170
....*....|....
gi 677652373 168 DEPTTWLD-ISHQI 180
Cdd:cd03289 163 DEPSAHLDpITYQV 176
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
22-184 |
9.97e-07 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 49.52 E-value: 9.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 22 VAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGeqiqryaskevarRIGLLAQNA-TTPGDITVQE 100
Cdd:TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSwIMPGTIKDNI 507
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 101 L--VTRGRYPHQPLFTRWR-KEDADAVASAMRatgiTSLAAQSVdTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDIS 177
Cdd:TIGR01271 508 IfgLSYDEYRYTSVIKACQlEEDIALFPEKDK----TVLGEGGI-TLSGGQRARISLARAVYKDADLYLLDSPFTHLDVV 582
|
....*..
gi 677652373 178 HQIDLLE 184
Cdd:TIGR01271 583 TEKEIFE 589
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
8-203 |
1.01e-06 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 49.40 E-value: 1.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 8 LRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLdgeqiqryaSKEVarRIGLLA 87
Cdd:PRK10636 313 LKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL---------AKGI--KLGYFA 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 88 QNATtpgditvqELVTRGRYPHQPLFTRWRKEDADAVASAMRATG-----ITSLAAQsvdtLSGGQRQRAWIAMVLAQET 162
Cdd:PRK10636 382 QHQL--------EFLRADESPLQHLARLAPQELEQKLRDYLGGFGfqgdkVTEETRR----FSGGEKARLVLALIVWQRP 449
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 677652373 163 SIMLLDEPTTWLDISHQIDLLELLSDLNRekgyTLAAVLHD 203
Cdd:PRK10636 450 NLLLLDEPTNHLDLDMRQALTEALIDFEG----ALVVVSHD 486
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
33-193 |
2.35e-06 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 46.21 E-value: 2.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 33 GHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVwldgeqiqryaskevarrigllaqnattpgdITVqelvtrgryphqpl 112
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGV-------------------------------IYI-------------- 36
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 113 ftrwrkeDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNRE 192
Cdd:smart00382 37 -------DGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLL 109
|
.
gi 677652373 193 K 193
Cdd:smart00382 110 L 110
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
22-184 |
3.41e-06 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 47.16 E-value: 3.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 22 VAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGeqiqryaskevarRIGLLAQNA-TTPGDITVQE 100
Cdd:cd03291 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------RISFSSQFSwIMPGTIKENI 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 101 L--VTRGRYPHQPLFTRWR-KEDADAVASAMRatgiTSLAAQSVdTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDIS 177
Cdd:cd03291 119 IfgVSYDEYRYKSVVKACQlEEDITKFPEKDN----TVLGEGGI-TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVF 193
|
....*..
gi 677652373 178 HQIDLLE 184
Cdd:cd03291 194 TEKEIFE 200
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
140-235 |
5.88e-06 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 47.37 E-value: 5.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 140 SVDTLSGGQRQRAWIAmvlaqeTSI--------MLLDEPTTWLdisHQID---LLELLSDLnREKGYTLAAVLHDlNQAC 208
Cdd:PRK00349 486 SAGTLSGGEAQRIRLA------TQIgsgltgvlYVLDEPSIGL---HQRDndrLIETLKHL-RDLGNTLIVVEHD-EDTI 554
|
90 100 110
....*....|....*....|....*....|...
gi 677652373 209 RYATHLIAL------REGNIVAQGAPKEIVTAE 235
Cdd:PRK00349 555 RAADYIVDIgpgagvHGGEVVASGTPEEIMKNP 587
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
26-202 |
9.55e-06 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 46.28 E-value: 9.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 26 LNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMtPVDGHVwldgeqiqryASKEVARRIGLLAQNATtpgdITVQELVTRG 105
Cdd:TIGR00954 471 LSFEVPSGNNLLICGPNGCGKSSLFRILGELW-PVYGGR----------LTKPAKGKLFYVPQRPY----MTLGTLRDQI 535
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 106 RYPHQPlFTRWRKEDADAVASAM-----------RATGITSLAAQSvDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWL 174
Cdd:TIGR00954 536 IYPDSS-EDMKRRGLSDKDLEQIldnvqlthileREGGWSAVQDWM-DVLSGGEKQRIAMARLFYHKPQFAILDECTSAV 613
|
170 180
....*....|....*....|....*...
gi 677652373 175 dishQIDLLELLSDLNREKGYTLAAVLH 202
Cdd:TIGR00954 614 ----SVDVEGYMYRLCREFGITLFSVSH 637
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
21-176 |
1.45e-05 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 45.17 E-value: 1.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 21 TVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLS--RLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQN--ATTPG-- 94
Cdd:PRK09580 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAgrEDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQypVEIPGvs 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 95 -DITVQELVTRGR-YPHQPLFTRWrkEDADAVASAMRATGI-TSLAAQSVDT-LSGGQRQRAWIAMVLAQETSIMLLDEP 170
Cdd:PRK09580 95 nQFFLQTALNAVRsYRGQEPLDRF--DFQDLMEEKIALLKMpEDLLTRSVNVgFSGGEKKRNDILQMAVLEPELCILDES 172
|
....*.
gi 677652373 171 TTWLDI 176
Cdd:PRK09580 173 DSGLDI 178
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
25-240 |
1.69e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 45.74 E-value: 1.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 25 NLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGhvwldgeqiqryASKEVARRIGLLAQ-----NATTPGDITVQ 99
Cdd:PLN03232 635 DINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAET------------SSVVIRGSVAYVPQvswifNATVRENILFG 702
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 100 ELVTRGRYphqplftrWRKEDADAVASAMR---ATGITSLAAQSVDtLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLD- 175
Cdd:PLN03232 703 SDFESERY--------WRAIDVTALQHDLDllpGRDLTEIGERGVN-ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDa 773
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 677652373 176 -ISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRyathLIALREGNIVAQGAPKEIV-TAELIEKI 240
Cdd:PLN03232 774 hVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDR----IILVSEGMIKEEGTFAELSkSGSLFKKL 836
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
22-235 |
1.77e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 45.88 E-value: 1.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 22 VAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQnatTP----GDIt 97
Cdd:PLN03130 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQ---APvlfsGTV- 1329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 98 vqelvtrgRYPHQPlFTrwRKEDADAVASAMRA----------TGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLL 167
Cdd:PLN03130 1330 --------RFNLDP-FN--EHNDADLWESLERAhlkdvirrnsLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVL 1398
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 677652373 168 DEPTTWLDISHQIdlleLLSDLNRE--KGYTLAAVLHDLNQA--CryaTHLIALREGNIVAQGAPKEIVTAE 235
Cdd:PLN03130 1399 DEATAAVDVRTDA----LIQKTIREefKSCTMLIIAHRLNTIidC---DRILVLDAGRVVEFDTPENLLSNE 1463
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
15-184 |
1.83e-05 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 45.71 E-value: 1.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 15 LGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSrlmtpvdGHVWLDGEQIQ---------------RYAS--- 76
Cdd:PRK11147 11 LSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILN-------GEVLLDDGRIIyeqdlivarlqqdppRNVEgtv 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 77 --------KEVARRI----GLLAQNATTPGDITVQELVT-RGRYPHQPLftrWRKED-ADAVASAMRATGITSLAAqsvd 142
Cdd:PRK11147 84 ydfvaegiEEQAEYLkryhDISHLVETDPSEKNLNELAKlQEQLDHHNL---WQLENrINEVLAQLGLDPDAALSS---- 156
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 677652373 143 tLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDIShQIDLLE 184
Cdd:PRK11147 157 -LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIE-TIEWLE 196
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
143-235 |
2.01e-05 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 45.79 E-value: 2.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 143 TLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRyATHLIAL----R 218
Cdd:PTZ00265 1358 SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKR-SDKIVVFnnpdR 1436
|
90
....*....|....*...
gi 677652373 219 EGNIV-AQGAPKEIVTAE 235
Cdd:PTZ00265 1437 TGSFVqAHGTHEELLSVQ 1454
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
1-53 |
3.05e-05 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 44.25 E-value: 3.05e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 677652373 1 MTESVARLRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTL 53
Cdd:CHL00131 1 MNKNKPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVI 53
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
118-233 |
3.39e-05 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 44.34 E-value: 3.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 118 KEDADAVASAM-RATGITSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNREkGYT 196
Cdd:NF000106 118 RKDARARADELlERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRD-GAT 196
|
90 100 110
....*....|....*....|....*....|....*..
gi 677652373 197 LAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVT 233
Cdd:NF000106 197 VLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELKT 233
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
25-224 |
3.45e-05 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 44.82 E-value: 3.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 25 NLNVSIPDGHFTAIIGPNGCGKSTLLRTL-SRLMTPVDGHVWLDGEQIQ-RYASKEVARRIGLLAQNATTPG-------- 94
Cdd:TIGR02633 278 DVSFSLRRGEILGVAGLVGAGRTELVQALfGAYPGKFEGNVFINGKPVDiRNPAQAIRAGIAMVPEDRKRHGivpilgvg 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 95 -DITVQELvtrgryphQPLFTRWRKEDADAVASAMRATGITSLAAQSVD----TLSGGQRQRAWIAMVLAQETSIMLLDE 169
Cdd:TIGR02633 358 kNITLSVL--------KSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFlpigRLSGGNQQKAVLAKMLLTNPRVLILDE 429
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 677652373 170 PTTWLDISHQIDLLELLSDLNREkGYTLAAVLHDLNQACRYATHLIALREGNIVA 224
Cdd:TIGR02633 430 PTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVIGEGKLKG 483
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
28-184 |
3.46e-05 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 44.85 E-value: 3.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 28 VSIPDGHFTAIIGPNGCGKSTLLRTLSrlMTPVDG--------HVwldgEQ---------IQRYASKEVAR------RIG 84
Cdd:PLN03073 198 VTLAFGRHYGLVGRNGTGKTTFLRYMA--MHAIDGipkncqilHV----EQevvgddttaLQCVLNTDIERtqlleeEAQ 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 85 LLAQNATTP--GDITVQELVTRGRYPHQPLFTRW-----RKEDADAVASAMRATGITS-------LAAQSVDTLSGGQRQ 150
Cdd:PLN03073 272 LVAQQRELEfeTETGKGKGANKDGVDKDAVSQRLeeiykRLELIDAYTAEARAASILAglsftpeMQVKATKTFSGGWRM 351
|
170 180 190
....*....|....*....|....*....|....
gi 677652373 151 RAWIAMVLAQETSIMLLDEPTTWLDIsHQIDLLE 184
Cdd:PLN03073 352 RIALARALFIEPDLLLLDEPTNHLDL-HAVLWLE 384
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
140-226 |
3.64e-05 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 43.79 E-value: 3.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 140 SVDTLSGGQRQRAWIAMVLAQETS--IMLLDEPTTWLdisHQID---LLELLSDLnREKGYTLAAVLHDLnQACRYATHL 214
Cdd:cd03270 134 SAPTLSGGEAQRIRLATQIGSGLTgvLYVLDEPSIGL---HPRDndrLIETLKRL-RDLGNTVLVVEHDE-DTIRAADHV 208
|
90
....*....|....*...
gi 677652373 215 IAL------REGNIVAQG 226
Cdd:cd03270 209 IDIgpgagvHGGEIVAQG 226
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
12-201 |
5.09e-05 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 43.01 E-value: 5.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 12 QLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQR----YASKE--VARRIGL 85
Cdd:PRK13540 6 ELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKdlctYQKQLcfVGHRSGI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 86 -----LAQNA-----TTPGDITVQELVTRGRYPHqplftrwrkedadavasamratgitsLAAQSVDTLSGGQRQRAWIA 155
Cdd:PRK13540 86 npyltLRENClydihFSPGAVGITELCRLFSLEH--------------------------LIDYPCGLLSSGQKRQVALL 139
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 677652373 156 MVLAQETSIMLLDEPTTWLDishQIDLLELLSDL--NREKGytlAAVL 201
Cdd:PRK13540 140 RLWMSKAKLWLLDEPLVALD---ELSLLTIITKIqeHRAKG---GAVL 181
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
142-235 |
5.11e-05 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 44.25 E-value: 5.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 142 DTLSGG--QRQRawiamvLAqeTSI------ML--LDEPTTWLdisHQID---LLELLSDLnREKGYTLAAVLHDLnQAC 208
Cdd:COG0178 484 GTLSGGeaQRIR------LA--TQIgsglvgVLyvLDEPSIGL---HQRDndrLIETLKRL-RDLGNTVIVVEHDE-DTI 550
|
90 100 110
....*....|....*....|....*....|...
gi 677652373 209 RYATHLIAL------REGNIVAQGAPKEIVTAE 235
Cdd:COG0178 551 RAADYIIDIgpgageHGGEVVAQGTPEEILKNP 583
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
24-59 |
5.43e-05 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 43.84 E-value: 5.43e-05
10 20 30
....*....|....*....|....*....|....*.
gi 677652373 24 KNLNVSIPDGhFTAIIGPNGCGKSTLLRTLSRLMTP 59
Cdd:COG3593 15 KDLSIELSDD-LTVLVGENNSGKSSILEALRLLLGP 49
|
|
| COG3950 |
COG3950 |
Predicted ATP-binding protein involved in virulence [General function prediction only]; |
11-59 |
5.64e-05 |
|
Predicted ATP-binding protein involved in virulence [General function prediction only];
Pssm-ID: 443150 [Multi-domain] Cd Length: 276 Bit Score: 43.45 E-value: 5.64e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 677652373 11 DQLTL-GYGSYtvaKNLNVSIP-DGHFTAIIGPNGCGKSTLLRTLSRLMTP 59
Cdd:COG3950 4 KSLTIeNFRGF---EDLEIDFDnPPRLTVLVGENGSGKTTLLEAIALALSG 51
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
25-220 |
1.22e-04 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 42.85 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 25 NLNVSIPDGHFTAIIGPNGCGKSTLLRTLSrlmtPV------DGHVWLDGEqIQRYASKEVARRIGLLaqnattpgdITV 98
Cdd:NF040905 19 DVNLSVREGEIHALCGENGAGKSTLMKVLS----GVyphgsyEGEILFDGE-VCRFKDIRDSEALGIV---------IIH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 99 QEL------------------VTRGryphqplFTRWRKEDADAvASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQ 160
Cdd:NF040905 85 QELalipylsiaeniflgnerAKRG-------VIDWNETNRRA-RELLAKVGLDESPDTLVTDIGVGKQQLVEIAKALSK 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 161 ETSIMLLDEPTTWLDISHQIDLLELLSDLnREKGYTLAAVLHDLNQACRYATHLIALREG 220
Cdd:NF040905 157 DVKLLILDEPTAALNEEDSAALLDLLLEL-KAQGITSIIISHKLNEIRRVADSITVLRDG 215
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
24-50 |
1.62e-04 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 42.75 E-value: 1.62e-04
10 20
....*....|....*....|....*..
gi 677652373 24 KNLNVSIPDGHFTAIIGPNGCGKSTLL 50
Cdd:PRK00349 626 KNVDVEIPLGKFTCVTGVSGSGKSTLI 652
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
118-194 |
1.99e-04 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 42.41 E-value: 1.99e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 677652373 118 KEDADAVASAMRATgiTSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDL-NREKG 194
Cdd:PRK10982 368 KSDTQWVIDSMRVK--TPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELaKKDKG 443
|
|
| ABC_SMC_barmotin |
cd03278 |
ATP-binding cassette domain of barmotin, a member of the SMC protein family; Barmotin is a ... |
23-70 |
2.00e-04 |
|
ATP-binding cassette domain of barmotin, a member of the SMC protein family; Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18).
Pssm-ID: 213245 [Multi-domain] Cd Length: 197 Bit Score: 41.30 E-value: 2.00e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 677652373 23 AKNLNVSIPDGhFTAIIGPNGCGKSTLlrtlsrlmtpVDGHVWLDGEQ 70
Cdd:cd03278 13 ADKTTIPFPPG-LTAIVGPNGSGKSNI----------IDAIRWVLGEQ 49
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
28-50 |
2.51e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.27 E-value: 2.51e-04
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
35-56 |
2.58e-04 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 41.61 E-value: 2.58e-04
|
| AAA_29 |
pfam13555 |
P-loop containing region of AAA domain; |
36-59 |
4.82e-04 |
|
P-loop containing region of AAA domain;
Pssm-ID: 433304 [Multi-domain] Cd Length: 61 Bit Score: 37.58 E-value: 4.82e-04
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
139-230 |
6.69e-04 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 40.97 E-value: 6.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 139 QSVDTLSGGQRQRAWIAMVLAQETS-IM-LLDEPTTWLDISHQIDLLELLSDLnREKGYTLAAVLHDlNQACRYATHLI- 215
Cdd:PRK00635 472 RALATLSGGEQERTALAKHLGAELIgITyILDEPSIGLHPQDTHKLINVIKKL-RDQGNTVLLVEHD-EQMISLADRIId 549
|
90 100
....*....|....*....|
gi 677652373 216 -----ALREGNIVAQGAPKE 230
Cdd:PRK00635 550 igpgaGIFGGEVLFNGSPRE 569
|
|
| COG4637 |
COG4637 |
Predicted ATPase [General function prediction only]; |
24-56 |
8.81e-04 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443675 [Multi-domain] Cd Length: 371 Bit Score: 40.30 E-value: 8.81e-04
10 20 30
....*....|....*....|....*....|....
gi 677652373 24 KNL-NVSIPDGHFTAIIGPNGCGKSTLLRTLSRL 56
Cdd:COG4637 11 KSLrDLELPLGPLTVLIGANGSGKSNLLDALRFL 44
|
|
| AAA_23 |
pfam13476 |
AAA domain; |
13-50 |
1.20e-03 |
|
AAA domain;
Pssm-ID: 463890 [Multi-domain] Cd Length: 190 Bit Score: 39.02 E-value: 1.20e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 677652373 13 LTL-GYGSYTvaknlNVSI-PDGHFTAIIGPNGCGKSTLL 50
Cdd:pfam13476 1 LTIeNFRSFR-----DQTIdFSKGLTLITGPNGSGKTTIL 35
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
23-239 |
1.34e-03 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 39.77 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 23 AKNLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPVDGHVWLDGEQIQ-RYASKEVARRIGLLAQNATTPG------- 94
Cdd:PRK09700 279 VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISpRSPLDAVKKGMAYITESRRDNGffpnfsi 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 677652373 95 --DITVQELVTRGRYphQPLFTRWRKEDADAVASAMRAtgITSLAAQSVDT----LSGGQRQRAWIAMVLAQETSIMLLD 168
Cdd:PRK09700 359 aqNMAISRSLKDGGY--KGAMGLFHEVDEQRTAENQRE--LLALKCHSVNQniteLSGGNQQKVLISKWLCCCPEVIIFD 434
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 677652373 169 EPTTWLDISHQIDLLELLSDLNrEKGYTLAAVLHDLNQACRYATHLIALREGNIVAQGAPKEIVTAELIEK 239
Cdd:PRK09700 435 EPTRGIDVGAKAEIYKVMRQLA-DDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRDDMSEEEIMA 504
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
23-47 |
1.74e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 39.53 E-value: 1.74e-03
10 20
....*....|....*....|....*
gi 677652373 23 AKNLNVSIPDGhFTAIIGPNGCGKS 47
Cdd:COG1196 15 ADPTTIPFEPG-ITAIVGPNGSGKS 38
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
138-182 |
2.64e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 39.11 E-value: 2.64e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 677652373 138 AQSVDTLSGGQRQ------RAWIAMVLAQETSIMLLDEPTTWLDISHQIDL 182
Cdd:PRK01156 796 VEGIDSLSGGEKTavafalRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNL 846
|
|
| BMS1 |
COG5192 |
GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and ... |
31-58 |
2.75e-03 |
|
GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis];
Pssm-ID: 227519 [Multi-domain] Cd Length: 1077 Bit Score: 38.95 E-value: 2.75e-03
10 20
....*....|....*....|....*...
gi 677652373 31 PDGHFTAIIGPNGCGKSTLLRTLSRLMT 58
Cdd:COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFT 94
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
134-192 |
3.15e-03 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 38.76 E-value: 3.15e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 677652373 134 TSLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQIDLLELLSDLNRE 192
Cdd:PRK13549 396 TASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ 454
|
|
| ABC_SMC1_euk |
cd03275 |
ATP-binding cassette domain of eukaryotic SMC1 proteins; The structural maintenance of ... |
35-54 |
5.21e-03 |
|
ATP-binding cassette domain of eukaryotic SMC1 proteins; The structural maintenance of chromosomes (SMC) proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18).
Pssm-ID: 213242 [Multi-domain] Cd Length: 247 Bit Score: 37.55 E-value: 5.21e-03
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
28-70 |
9.99e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 37.34 E-value: 9.99e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 677652373 28 VSIP-DGHFTAIIGPNGCGKSTLlrtlsrlmtpVDGHVWLDGEQ 70
Cdd:TIGR02168 17 TTINfDKGITGIVGPNGCGKSNI----------VDAIRWVLGEQ 50
|
|
| |
