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Conserved domains on  [gi|684993592|gb|KGA31329|]
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mu-like prophage FluMu gp41 family protein [Pectobacterium brasiliense]

Protein Classification

phage tail assembly protein( domain architecture ID 10562347)

phage tail assembly protein similar to Escherichia virus P2 tail assembly protein E (gpE), which promotes tail assembly by creating a scaffold for the tail tube proteins

Gene Ontology:  GO:0098003

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_TAC_7 pfam10109
Phage tail assembly chaperone proteins, E, or 41 or 14; This is family of various Myoviridae ...
 9-86 9.56e-07

Phage tail assembly chaperone proteins, E, or 41 or 14; This is family of various Myoviridae bacteriophage tail assembly chaperone, or TAC, proteins.


:

Pssm-ID: 431061  Cd Length: 79  Bit Score: 42.72  E-value: 9.56e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 684993592   9 VTLETPIKRGDTLIDTITLIKPTTGTLRGVSLAAL---AGSDVDAMIKVLPRMTmpALTEAEITRLELPDMIAIAGKVIG 85
Cdd:pfam10109  1 ITLAKPIEVGGKTYTELTLREPTVGDLRAAQVKGGkpdVDALMGAEIALIARLS--GLPPEDLEQLDPADYARLQEYVAG 78


                 .
gi 684993592  86 F 86
Cdd:pfam10109 79 F 79
 
Name Accession Description Interval E-value
Phage_TAC_7 pfam10109
Phage tail assembly chaperone proteins, E, or 41 or 14; This is family of various Myoviridae ...
 9-86 9.56e-07

Phage tail assembly chaperone proteins, E, or 41 or 14; This is family of various Myoviridae bacteriophage tail assembly chaperone, or TAC, proteins.


Pssm-ID: 431061  Cd Length: 79  Bit Score: 42.72  E-value: 9.56e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 684993592   9 VTLETPIKRGDTLIDTITLIKPTTGTLRGVSLAAL---AGSDVDAMIKVLPRMTmpALTEAEITRLELPDMIAIAGKVIG 85
Cdd:pfam10109  1 ITLAKPIEVGGKTYTELTLREPTVGDLRAAQVKGGkpdVDALMGAEIALIARLS--GLPPEDLEQLDPADYARLQEYVAG 78


                 .
gi 684993592  86 F 86
Cdd:pfam10109 79 F 79
 
Name Accession Description Interval E-value
Phage_TAC_7 pfam10109
Phage tail assembly chaperone proteins, E, or 41 or 14; This is family of various Myoviridae ...
 9-86 9.56e-07

Phage tail assembly chaperone proteins, E, or 41 or 14; This is family of various Myoviridae bacteriophage tail assembly chaperone, or TAC, proteins.


Pssm-ID: 431061  Cd Length: 79  Bit Score: 42.72  E-value: 9.56e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 684993592   9 VTLETPIKRGDTLIDTITLIKPTTGTLRGVSLAAL---AGSDVDAMIKVLPRMTmpALTEAEITRLELPDMIAIAGKVIG 85
Cdd:pfam10109  1 ITLAKPIEVGGKTYTELTLREPTVGDLRAAQVKGGkpdVDALMGAEIALIARLS--GLPPEDLEQLDPADYARLQEYVAG 78


                 .
gi 684993592  86 F 86
Cdd:pfam10109 79 F 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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