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Conserved domains on  [gi|743333900|gb|KID40237|]
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hypothetical protein QT16_04100 [Pseudoalteromonas distincta]

Protein Classification

DUF349 domain-containing protein( domain architecture ID 10512606)

DUF349 domain-containing protein similar to Mycobacterium smegmatis MSMEG_2731, an uncharacterized nucleic acid binding protein that physically interacts with 30S ribosomal protein S1 (RPS1)

Gene Ontology:  GO:0003676

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF349 pfam03993
Domain of Unknown Function (DUF349); This domain is found singly or as up to five tandem ...
 626-693 1.95e-05

Domain of Unknown Function (DUF349); This domain is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.


:

Pssm-ID: 427636 [Multi-domain]  Cd Length: 73  Bit Score: 43.31  E-value: 1.95e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 743333900  626 KTYRTLNDRYKNEQQQVLALLNAFHKSNAALKNELVEKAQQLSQS-DDLAAACQELKQMQQQWQTIGFA 693
Cdd:pfam03993   4 KRFKAACDAFFDRRKAFFEELDAEREENLEKKEALIEEAEALADStTDWKAATKELRELQEEWKAIGPV 72
DUF349 pfam03993
Domain of Unknown Function (DUF349); This domain is found singly or as up to five tandem ...
 551-624 5.27e-04

Domain of Unknown Function (DUF349); This domain is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.


:

Pssm-ID: 427636 [Multi-domain]  Cd Length: 73  Bit Score: 39.46  E-value: 5.27e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 743333900  551 QFDEQIELLFAPCRSYFAEQEVQREASKAQRENIINDMHALhlqptAEDDFDWKQYESQYNRLNKAWRSVGKVD 624
Cdd:pfam03993   5 RFKAACDAFFDRRKAFFEELDAEREENLEKKEALIEEAEAL-----ADSTTDWKAATKELRELQEEWKAIGPVP 73
 
Name Accession Description Interval E-value
DUF349 pfam03993
Domain of Unknown Function (DUF349); This domain is found singly or as up to five tandem ...
 626-693 1.95e-05

Domain of Unknown Function (DUF349); This domain is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.


Pssm-ID: 427636 [Multi-domain]  Cd Length: 73  Bit Score: 43.31  E-value: 1.95e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 743333900  626 KTYRTLNDRYKNEQQQVLALLNAFHKSNAALKNELVEKAQQLSQS-DDLAAACQELKQMQQQWQTIGFA 693
Cdd:pfam03993   4 KRFKAACDAFFDRRKAFFEELDAEREENLEKKEALIEEAEALADStTDWKAATKELRELQEEWKAIGPV 72
DUF349 pfam03993
Domain of Unknown Function (DUF349); This domain is found singly or as up to five tandem ...
 551-624 5.27e-04

Domain of Unknown Function (DUF349); This domain is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.


Pssm-ID: 427636 [Multi-domain]  Cd Length: 73  Bit Score: 39.46  E-value: 5.27e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 743333900  551 QFDEQIELLFAPCRSYFAEQEVQREASKAQRENIINDMHALhlqptAEDDFDWKQYESQYNRLNKAWRSVGKVD 624
Cdd:pfam03993   5 RFKAACDAFFDRRKAFFEELDAEREENLEKKEALIEEAEAL-----ADSTTDWKAATKELRELQEEWKAIGPVP 73
 
Name Accession Description Interval E-value
DUF349 pfam03993
Domain of Unknown Function (DUF349); This domain is found singly or as up to five tandem ...
 626-693 1.95e-05

Domain of Unknown Function (DUF349); This domain is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.


Pssm-ID: 427636 [Multi-domain]  Cd Length: 73  Bit Score: 43.31  E-value: 1.95e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 743333900  626 KTYRTLNDRYKNEQQQVLALLNAFHKSNAALKNELVEKAQQLSQS-DDLAAACQELKQMQQQWQTIGFA 693
Cdd:pfam03993   4 KRFKAACDAFFDRRKAFFEELDAEREENLEKKEALIEEAEALADStTDWKAATKELRELQEEWKAIGPV 72
DUF349 pfam03993
Domain of Unknown Function (DUF349); This domain is found singly or as up to five tandem ...
 551-624 5.27e-04

Domain of Unknown Function (DUF349); This domain is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.


Pssm-ID: 427636 [Multi-domain]  Cd Length: 73  Bit Score: 39.46  E-value: 5.27e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 743333900  551 QFDEQIELLFAPCRSYFAEQEVQREASKAQRENIINDMHALhlqptAEDDFDWKQYESQYNRLNKAWRSVGKVD 624
Cdd:pfam03993   5 RFKAACDAFFDRRKAFFEELDAEREENLEKKEALIEEAEAL-----ADSTTDWKAATKELRELQEEWKAIGPVP 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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