|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
10-468 |
0e+00 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 525.88 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 10 KLLLNAVGEGIYGFDLSGNAVFVNPAAERMTGWCAEELLGKKIHQYHHHThadgtpyPADECqiyctmfdGKRREVKNEV 89
Cdd:COG3829 14 EAILDSLDDGIIVVDADGRITYVNRAAERILGLPREEVIGKNVTELIPNS-------PLLEV--------LKTGKPVTGV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 90 FWRKDGSSFAVQYTSTPVYKNDKLIGAVAVFRDIslqqqtqnalqealTQVKHLSEQLKDENnyLIAELNEDWQDSGLVG 169
Cdd:COG3829 79 IQKTGGKGKTVIVTAIPIFEDGEVIGAVETFRDI--------------TELKRLERKLREEE--LERGLSAKYTFDDIIG 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 170 QSHIFQTMLDQIKLVSETDSTVLILGENGTGKELVARNLYRLSKRSEQAFIKVNCAAFTPSLLESELFGHEKGAFTGAN- 248
Cdd:COG3829 143 KSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTGAKk 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 249 ERRKGRFELADKGTLFLDEIAELPLEAQSKLLRVLQEQEFERVGGSNTLKVNIRVIAATNRDLWEMVQKGTFRIDLYYRL 328
Cdd:COG3829 223 GGKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRL 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 329 NVFPIKVPALKNRKEDIPYLCANLIAQLNKRLGKNLKGLSKKAITQLQAYDWPGNIRELQNVLEREAILSNQAVLQL--- 405
Cdd:COG3829 303 NVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIKGISPEALELLLAYDWPGNVRELENVIERAVVLSEGDVITPehl 382
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 743333903 406 -----SQPLQAGGEVVINPSLTLDEAQKQHITSVLALSHWQISgdkGAAVKLGLPESTLRSKMRKLGI 468
Cdd:COG3829 383 peyllEEAEAASAAEEGSLKEALEEVEKELIEEALEKTGGNKS---KAAKALGISRSTLYRKLKKYGI 447
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
160-467 |
3.03e-139 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 406.27 E-value: 3.03e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 160 EDWQDSGLVGQSHIFQTMLDQIKLVSETDSTVLILGENGTGKELVARNLYRLSKRSEQAFIKVNCAAFTPSLLESELFGH 239
Cdd:COG2204 126 ENAEDSGLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGPFVAVNCAAIPEELLESELFGH 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 240 EKGAFTGANERRKGRFELADKGTLFLDEIAELPLEAQSKLLRVLQEQEFERVGGSNTLKVNIRVIAATNRDLWEMVQKGT 319
Cdd:COG2204 206 EKGAFTGAVARRIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPIPVDVRVIAATNRDLEELVEEGR 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 320 FRIDLYYRLNVFPIKVPALKNRKEDIPYLCANLIAQLNKRLGKNLKgLSKKAITQLQAYDWPGNIRELQNVLEREAILSN 399
Cdd:COG2204 286 FREDLYYRLNVFPIELPPLRERREDIPLLARHFLARFAAELGKPVK-LSPEALEALLAYDWPGNVRELENVIERAVILAD 364
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 743333903 400 QAVLQLSQplqaggevvinPSLTLDEAQKQHITSVLALSHWQISgdkGAAVKLGLPESTLRSKMRKLG 467
Cdd:COG2204 365 GEVITAED-----------LPEALEEVERELIERALEETGGNVS---RAAELLGISRRTLYRKLKKYG 418
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
106-468 |
8.18e-123 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 367.58 E-value: 8.18e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 106 PVYKNDKLIGAV-------AVFRDISLQQ-QTQNALQEALTQVKHLSEQL----KDENNYLIAELNEDWQDSGLVGQSHI 173
Cdd:PRK05022 116 PLFVDGRLIGALtldaldpGQFDAFSDEElRALAALAAATLRNALLIEQLesqaELPQDVAEFLRQEALKEGEMIGQSPA 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 174 FQTMLDQIKLVSETDSTVLILGENGTGKELVARNLYRLSKRSEQAFIKVNCAAFTPSLLESELFGHEKGAFTGANERRKG 253
Cdd:PRK05022 196 MQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSG 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 254 RFELADKGTLFLDEIAELPLEAQSKLLRVLQEQEFERVGGSNTLKVNIRVIAATNRDLWEMVQKGTFRIDLYYRLNVFPI 333
Cdd:PRK05022 276 KFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPL 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 334 KVPALKNRKEDIPYLCANLIAQLNKRLG-KNLKgLSKKAITQLQAYDWPGNIRELQNVLEREAILSnqavlqLSQplQAG 412
Cdd:PRK05022 356 SVPPLRERGDDVLLLAGYFLEQNRARLGlRSLR-LSPAAQAALLAYDWPGNVRELEHVISRAALLA------RAR--GAG 426
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 413 GEVVINP------------------------SLTLDEA----QKQHITSVLALSH--WqisgdKGAAVKLGLPESTLRSK 462
Cdd:PRK05022 427 RIVTLEAqhldlpaevalpppeaaaapaavvSQNLREAteafQRQLIRQALAQHQgnW-----AAAARALELDRANLHRL 501
|
....*.
gi 743333903 463 MRKLGI 468
Cdd:PRK05022 502 AKRLGL 507
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
131-471 |
6.67e-119 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 363.38 E-value: 6.67e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 131 NALqeALTQVKHLSEQLKDENNYLIAELNEDWQDSG-LVGQSHIFQTMLDQIKLVSETDSTVLILGENGTGKELVARNLY 209
Cdd:PRK15429 343 NAL--AYQEIHRLKERLVDENLALTEQLNNVDSEFGeIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIH 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 210 RLSKRSEQAFIKVNCAAFTPSLLESELFGHEKGAFTGANERRKGRFELADKGTLFLDEIAELPLEAQSKLLRVLQEQEFE 289
Cdd:PRK15429 421 NLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFE 500
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 290 RVGGSNTLKVNIRVIAATNRDLWEMVQKGTFRIDLYYRLNVFPIKVPALKNRKEDIPYLCANLIAQLNKRLGKNLKGLSK 369
Cdd:PRK15429 501 RLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPA 580
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 370 KAITQLQAYDWPGNIRELQNVLEREAILSNQAVLQLSQPLQAGGEVVINPSLTLD----EAQKQHITSVLALSHWQISGD 445
Cdd:PRK15429 581 ETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDITLPEPETPPAATVVaqegEDEYQLIVRVLKETNGVVAGP 660
|
330 340
....*....|....*....|....*.
gi 743333903 446 KGAAVKLGLPESTLRSKMRKLGIAKN 471
Cdd:PRK15429 661 KGAAQRLGLKRTTLLSRMKRLGIDKS 686
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
166-457 |
1.80e-114 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 347.09 E-value: 1.80e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 166 GLVGQSHIFQTMLDQIKLVSETDSTVLILGENGTGKELVARNLYRLSKRSEQAFIKVNCAAFTPSLLESELFGHEKGAFT 245
Cdd:TIGR01817 197 GIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFT 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 246 GANERRKGRFELADKGTLFLDEIAELPLEAQSKLLRVLQEQEFERVGGSNTLKVNIRVIAATNRDLWEMVQKGTFRIDLY 325
Cdd:TIGR01817 277 GAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLY 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 326 YRLNVFPIKVPALKNRKEDIPYLCANLIAQLNKRLGKNLKgLSKKAITQLQAYDWPGNIRELQNVLEREAILSNQAVLQL 405
Cdd:TIGR01817 357 YRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLT-ITPSAIRVLMSCKWPGNVRELENCLERTATLSRSGTITR 435
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 743333903 406 SQPLQAGGEvviNPSLTLDEAQKQHITSVLALShwqISGDKGAAVKLGLPES 457
Cdd:TIGR01817 436 SDFSCQSGQ---CLSPMLAKTCPHGHISIDPLA---GTTPPHSPASAALPGE 481
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
12-467 |
1.54e-112 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 344.96 E-value: 1.54e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 12 LLNAVGEGIYGFDLSGNAVFVNPAAERMTGWCAEELLGKKIHQYHHHTHADgtpypadecqiyctMFDGKRREVKnevfw 91
Cdd:COG3284 221 FLGSLSEGLLAFDEDGRIVAANRAARRLLGLADAALLGRPLEELFGLDLEA--------------LPDGARRAPA----- 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 92 rkdgssfavqyTSTPVYKND-KLIGAVAVFRDISLQQQTQNALQEALTQVkhlseqlkdennyliaelnedwqdSGLVGQ 170
Cdd:COG3284 282 -----------SPRPLRLRDgRRLGALLRLRPARRAARAAPAGAPAPAAL------------------------AALAGG 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 171 SHIFQTMLDQIKLVSETDSTVLILGENGTGKELVARNLYRLSKRSEQAFIKVNCAAFTPSLLESELFGHEKGAFTGANER 250
Cdd:COG3284 327 DPAMRRALRRARRLADRDIPVLILGETGTGKELFARAIHAASPRADGPFVAVNCAAIPEELIESELFGYEPGAFTGARRK 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 251 -RKGRFELADKGTLFLDEIAELPLEAQSKLLRVLQEQEFERVGGSNTLKVNIRVIAATNRDLWEMVQKGTFRIDLYYRLN 329
Cdd:COG3284 407 gRPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTKPIPVDVRLIAATHRDLRELVAAGRFREDLYYRLN 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 330 VFPIKVPALKNRkEDIPYLCANLIAQLNKRLGknLKGLSKKAITQLQAYDWPGNIRELQNVLEREAILSNQAVLQLS--- 406
Cdd:COG3284 487 GLTLTLPPLRER-EDLPALIEHLLRELAAGRG--PLRLSPEALALLAAYPWPGNVRELRNVLRTALALADGGVITVEdlp 563
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 743333903 407 ----QPLQAGGEVVINPSLTLDEAQKQHITSVLALSHWQISgdkGAAVKLGLPESTLRSKMRKLG 467
Cdd:COG3284 564 delrAELAAAAPAAAAPLTSLEEAERDAILRALRACGGNVS---AAARALGISRSTLYRKLKRYG 625
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
167-333 |
2.19e-109 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 320.89 E-value: 2.19e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 167 LVGQSHIFQTMLDQIKLVSETDSTVLILGENGTGKELVARNLYRLSKRSEQAFIKVNCAAFTPSLLESELFGHEKGAFTG 246
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 247 ANERRKGRFELADKGTLFLDEIAELPLEAQSKLLRVLQEQEFERVGGSNTLKVNIRVIAATNRDLWEMVQKGTFRIDLYY 326
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*..
gi 743333903 327 RLNVFPI 333
Cdd:pfam00158 161 RLNVIPI 167
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
147-468 |
1.25e-102 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 314.09 E-value: 1.25e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 147 LKDENNYLIAELNEDWQDSGLVGQSHIFQTMLDQIKLVSETDSTVLILGENGTGKELVARNLYRLSKRSEQAFIKVNCAA 226
Cdd:PRK11361 125 MKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAA 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 227 FTPSLLESELFGHEKGAFTGANERRKGRFELADKGTLFLDEIAELPLEAQSKLLRVLQEQEFERVGGSNTLKVNIRVIAA 306
Cdd:PRK11361 205 LPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAA 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 307 TNRDLWEMVQKGTFRIDLYYRLNVFPIKVPALKNRKEDIPYLCANLIAQLNKRLGKNLKGLSKKAITQLQAYDWPGNIRE 386
Cdd:PRK11361 285 TNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRE 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 387 LQNVLEREAILSNQAVL-------QLSQPLQAGGEVVINPS--LTLDEAQKQHITSVLALSHWQISGDKG-AAVKLGLPE 456
Cdd:PRK11361 365 LSNVIERAVVMNSGPIIfsedlppQIRQPVCNAGEVKTAPVgeRNLKEEIKRVEKRIIMEVLEQQEGNRTrTALMLGISR 444
|
330
....*....|..
gi 743333903 457 STLRSKMRKLGI 468
Cdd:PRK11361 445 RALMYKLQEYGI 456
|
|
| RNA_repair_RtcR |
NF038308 |
RNA repair transcriptional activator RtcR; |
165-468 |
3.99e-100 |
|
RNA repair transcriptional activator RtcR;
Pssm-ID: 468466 [Multi-domain] Cd Length: 527 Bit Score: 309.88 E-value: 3.99e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 165 SGLVGQSHIFQTMLDQIKLVS-ETDSTVLILGENGTGKELVARNLYRLSKRSEQ---AFIKVNCAAFTPSLLESELFGHE 240
Cdd:NF038308 179 SGIATRNAAFNRLIEQIERVAlRSRAPILLTGPTGAGKSFLARRIYELKKRRHQvsgPFVEVNCATLRGDLAMSELFGHV 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 241 KGAFTGANERRKGRFELADKGTLFLDEIAELPLEAQSKLLRVLQEQEFERVGGSNTLKVNIRVIAATNRDLWEMVQKGTF 320
Cdd:NF038308 259 KGAFTGAQADRAGLLRAADGGTLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRF 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 321 RIDLYYRLNVFPIKVPALKNRKEDIPYLCANLIAQLNKRLGKNLKGLSKK-----AITQLQAYDWPGNIRELQNVLEREA 395
Cdd:NF038308 339 REDLYARINLWTFRLPGLRERREDIEPNLDYELDRFARELGRQVRFNKEArfrylAFATSPEALWPGNFRELSASVTRMA 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 396 ILSNQAVLQ----------LSQPLQAGGEVVINPSLT-------------LDEAQKQHITSVLALSHWqiSGDKGAAVkL 452
Cdd:NF038308 419 TLADGGRITeelveeeiarLRAAWQSAPAAADDDALAdllggeqlaeldlFDRVQLAAVLRVCRQSRS--LSAAGRRL-F 495
|
330 340
....*....|....*....|.
gi 743333903 453 GLPESTLRS-----KMRKLGI 468
Cdd:NF038308 496 GVSRQQKASpndadRLRKYLA 516
|
|
| phageshock_pspF |
TIGR02974 |
psp operon transcriptional activator PspF; Members of this protein family are PspF, the ... |
167-419 |
5.09e-100 |
|
psp operon transcriptional activator PspF; Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH [Regulatory functions, DNA interactions]
Pssm-ID: 274371 [Multi-domain] Cd Length: 329 Bit Score: 303.06 E-value: 5.09e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 167 LVGQSHIFQTMLDQIKLVSETDSTVLILGENGTGKELVARNLYRLSKRSEQAFIKVNCAAFTPSLLESELFGHEKGAFTG 246
Cdd:TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 247 ANERRKGRFELADKGTLFLDEIAELPLEAQSKLLRVLQEQEFERVGGSNTLKVNIRVIAATNRDLWEMVQKGTFRIDLYY 326
Cdd:TIGR02974 81 AQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 327 RLNVFPIKVPALKNRKEDIPYLCANLIAQLNKRLG-KNLKGLSKKAITQLQAYDWPGNIRELQNVLEReailsnqAVLQL 405
Cdd:TIGR02974 161 RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGlPLFPGFTPQAREQLLEYHWPGNVRELKNVVER-------SVYRH 233
|
250
....*....|....
gi 743333903 406 SQPLQAGGEVVINP 419
Cdd:TIGR02974 234 GLEEAPIDEIIIDP 247
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
133-466 |
5.17e-99 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 305.12 E-value: 5.17e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 133 LQEALTQVK----HLSEQLKDEnnyliAELNEDWQDSGLVGQSHIFQTMLDQIKLVSETDSTVLILGENGTGKELVARNL 208
Cdd:TIGR01818 103 LDEAVTLVEralaHAQEQVALP-----ADAGEAEDSAELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARAL 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 209 YRLSKRSEQAFIKVNCAAFTPSLLESELFGHEKGAFTGANERRKGRFELADKGTLFLDEIAELPLEAQSKLLRVLQEQEF 288
Cdd:TIGR01818 178 HRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEF 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 289 ERVGGSNTLKVNIRVIAATNRDLWEMVQKGTFRIDLYYRLNVFPIKVPALKNRKEDIPYLCANLIAQLNKRLGKNLKGLS 368
Cdd:TIGR01818 258 YRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLD 337
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 369 KKAITQLQAYDWPGNIRELQNVLEREAILSNQAVLQLSQ---PLQAGGEVVI----NPSLTLDEAQKQHITSVL------ 435
Cdd:TIGR01818 338 PEALERLKQLRWPGNVRQLENLCRWLTVMASGDEVLVSDlpaELALTGRPASapdsDGQDSWDEALEAWAKQALsrgeqg 417
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 743333903 436 ----------------ALSHWQisGDK-GAAVKLGLPESTLRSKMRKL 466
Cdd:TIGR01818 418 lldralpeferplleaALQHTR--GHKqEAAALLGWGRNTLTRKLKEL 463
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
133-465 |
5.39e-96 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 296.56 E-value: 5.39e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 133 LQEALTQVKHLSEQLKDENNYLIAelnedwQDSGLVGQSHIFQTMLDQIKLVSETDSTVLILGENGTGKELVARNLYRLS 212
Cdd:PRK10365 113 LQATLEKALAHTHSIDAETPAVTA------SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASS 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 213 KRSEQAFIKVNCAAFTPSLLESELFGHEKGAFTGANERRKGRFELADKGTLFLDEIAELPLEAQSKLLRVLQEQEFERVG 292
Cdd:PRK10365 187 ARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVG 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 293 GSNTLKVNIRVIAATNRDLWEMVQKGTFRIDLYYRLNVFPIKVPALKNRKEDIPYLCANLIAQLNKRLGKNLKGLSKKAI 372
Cdd:PRK10365 267 SNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAM 346
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 373 TQLQAYDWPGNIRELQNVLEREAIL-----SNQAVLQL---SQPLQAGGEVVINPsltLDEAQKQHITSVLAlshwQISG 444
Cdd:PRK10365 347 DLLIHYDWPGNIRELENAVERAVVLltgeyISERELPLaiaSTPIPLGQSQDIQP---LVEVEKEVILAALE----KTGG 419
|
330 340
....*....|....*....|..
gi 743333903 445 DKG-AAVKLGLPESTLRSKMRK 465
Cdd:PRK10365 420 NKTeAARQLGITRKTLLAKLSR 441
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
193-468 |
1.81e-93 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 286.36 E-value: 1.81e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 193 ILGENGTGKELVARNLYRLSKRSEQAFIKVNCAAFTPSLLESelfghekgaftganerrkgrfeladkgtlfldeiaelp 272
Cdd:COG3604 120 ILGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES-------------------------------------- 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 273 leaqskllrvLQEQEFERVGGSNTLKVNIRVIAATNRDLWEMVQKGTFRIDLYYRLNVFPIKVPALKNRKEDIPYLCANL 352
Cdd:COG3604 162 ----------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFPIRLPPLRERREDIPLLAEHF 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 353 IAQLNKRLGKNLKGLSKKAITQLQAYDWPGNIRELQNVLEREAILSNQAVLQLSqplqaggEVVINPSLTLDEAQKQHIT 432
Cdd:COG3604 232 LEKFSRRLGKPILRLSPEALEALMAYPWPGNVRELENVIERAVILAEGGVLDAD-------DLAPGSREALEEVEREHIL 304
|
250 260 270
....*....|....*....|....*....|....*.
gi 743333903 433 SVLALSHWQISgdkGAAVKLGLPESTLRSKMRKLGI 468
Cdd:COG3604 305 EALERTGGNIA---GAARLLGLTPSTLRSRMKKLGI 337
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
12-470 |
1.28e-92 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 290.17 E-value: 1.28e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 12 LLNAVGEGIYGFDLSGNAVFVNPAAERMTGWCAEELLGK------------------KIHQYHHHTHADGTPYPADECQI 73
Cdd:COG3283 85 LLEALPDPVFSIDLKGKIELANPAALSLLGLSEEELIGQplsellkgfnfsrwlesnEPRPQSERVVINGQDYLADILPI 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 74 YCTMFDGKRRevknevfwrkdgssfavqytstpvykndkLIGAVAVFRdislqqqTQNALQEALTQVKHlseqlkdenny 153
Cdd:COG3283 165 YLPDEEGKSI-----------------------------LAGAVVTLK-------SAARLGEQLQALQV----------- 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 154 liaelNEDWQDSGLVGQSHIFQTMLDQIKLVSETDSTVLILGENGTGKELVARNLYRLSKRSEQAFIKVNCAAFTPSLLE 233
Cdd:COG3283 198 -----NDDSGFDHIVASSPKMRQVIRQAKKMAMLDAPLLIQGETGTGKELLARACHLASPRGDKPFLALNCAALPDDVAE 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 234 SELFGHEKGAFTGANERRKGRFELADKGTLFLDEIAELPLEAQSKLLRVLQEQEFERVGGSNTLKVNIRVIAATNRDLWE 313
Cdd:COG3283 273 SELFGYAPGAFGNAREGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDLAE 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 314 MVQKGTFRIDLYYRLNVFPIKVPALKNRKEDIPYLCANLIAQLNKRLGKNLKGLSKKAITQLQAYDWPGNIRELQNVLER 393
Cdd:COG3283 353 LVQEGEFREDLYYRLNVLTLTLPPLRERKSDILPLAEHFVARFSQQLGRPRPRLSPDLVDFLQSYPWPGNVRQLENALYR 432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 394 EAILSNQAVLQLSQ---PLQAGGEVVINPSL--TLDEAQKQHITSVLA-L-----SHWQIsgdkgaAVKLGLPESTLRSK 462
Cdd:COG3283 433 AVSLLEGDELTPEDlqlPEYAASAGLLDDLLegSLDEIVKRFERSLLRrLypsypSTRKL------AKRLGVSHTAIANK 506
|
....*...
gi 743333903 463 MRKLGIAK 470
Cdd:COG3283 507 LREYGIGK 514
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
142-469 |
2.05e-90 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 282.41 E-value: 2.05e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 142 HLSEqLKDENNYLIAELNEDwQDSGLVGQSHIFQTMLDQIKLVSETDSTVLILGENGTGKELVARNLYRLSKRSEQAFIK 221
Cdd:TIGR02915 118 HLYT-LETENRRLQSALGGT-ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVA 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 222 VNCAAFTPSLLESELFGHEKGAFTGANERRKGRFELADKGTLFLDEIAELPLEAQSKLLRVLQEQEFERVGGSNTLKVNI 301
Cdd:TIGR02915 196 INCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDV 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 302 RVIAATNRDLWEMVQKGTFRIDLYYRLNVFPIKVPALKNRKEDIPYLCANLIAQLNKRLGKNLKGLSKKAITQLQAYDWP 381
Cdd:TIGR02915 276 RIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWP 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 382 GNIRELQNVLEREAIL--SNQ---AVLQLSQPLQAGGEVVINPSLTLDEAQKQHITSVLALSHWQISgdkGAAVKLGLPE 456
Cdd:TIGR02915 356 GNVRELENKVKRAVIMaeGNQitaEDLGLDARERAETPLEVNLREVRERAEREAVRKAIARVDGNIA---RAAELLGITR 432
|
330
....*....|...
gi 743333903 457 STLRSKMRKLGIA 469
Cdd:TIGR02915 433 PTLYDLMKKHGIK 445
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
167-469 |
2.61e-85 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 265.00 E-value: 2.61e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 167 LVGQSHIFQTMLDQIKLVSETDSTVLILGENGTGKELVARNLYRLSKRSEQAFIKVNCAAFTPSLLESELFGHEKGAFTG 246
Cdd:PRK11608 8 LLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 247 ANERRKGRFELADKGTLFLDEIAELPLEAQSKLLRVLQEQEFERVGGSNTLKVNIRVIAATNRDLWEMVQKGTFRIDLYY 326
Cdd:PRK11608 88 AQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 327 RLNVFPIKVPALKNRKEDIPYLCANLIAQLNKRLGKNL-KGLSKKAITQLQAYDWPGNIRELQNVLER--------EAIL 397
Cdd:PRK11608 168 RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLfPGFTERARETLLNYRWPGNIRELKNVVERsvyrhgtsEYPL 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 398 SNqAVLQLSQPLQAGGEVVIN-----PSLTLDEAQKQH------ITSVLALSHWQisgDKGAAVKLGLPESTLRSKMRKL 466
Cdd:PRK11608 248 DN-IIIDPFKRRPAEEAIAVSettslPTLPLDLREWQHqqekelLQRSLQQAKFN---QKRAAELLGLTYHQLRALLKKH 323
|
...
gi 743333903 467 GIA 469
Cdd:PRK11608 324 QIL 326
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
167-465 |
6.44e-83 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 265.81 E-value: 6.44e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 167 LVGQSHIFQTMLDQIKLVSETDSTVLILGENGTGKELVARNLYR--------LSKRSEQAFIKVNCAAFTPSLLESELFG 238
Cdd:PRK15424 221 LLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHReyfarhdaRQGKKSHPFVAVNCGAIAESLLEAELFG 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 239 HEKGAFTGAneRRKGR---FELADKGTLFLDEIAELPLEAQSKLLRVLQEQEFERVGGSNTLKVNIRVIAATNRDLWEMV 315
Cdd:PRK15424 301 YEEGAFTGS--RRGGRaglFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDV 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 316 QKGTFRIDLYYRLNVFPIKVPALKNRKEDIPYLCA----NLIAQLNKRLGKNLKGLSKKAITQLQAYDWPGNIRELQNVL 391
Cdd:PRK15424 379 RQGRFRRDLFYRLSILRLQLPPLRERVADILPLAEsflkQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLM 458
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 743333903 392 EREAI-LSNQAVLQLS--QPLQAGGEVVINPSlTLDEAQKQHITSVLALShwQISGDKGAAVK-LGLPESTLRSKMRK 465
Cdd:PRK15424 459 ERLALfLSVEPTPDLTpqFLQLLLPELARESA-KTPAPRLLAATLQQALE--RFNGDKTAAANyLGISRTTLWRRLKA 533
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
167-465 |
2.52e-82 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 264.03 E-value: 2.52e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 167 LVGQSHIFQTMLDQIKLVSETDSTVLILGENGTGKELVARNLYRLSKRSEQAFIKVNCAAFTPSLLESELFGHEKGAFTG 246
Cdd:TIGR02329 214 LLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTG 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 247 AneRRKGR---FELADKGTLFLDEIAELPLEAQSKLLRVLQEQEFERVGGSNTLKVNIRVIAATNRDLWEMVQKGTFRID 323
Cdd:TIGR02329 294 A--RRGGRtglIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRD 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 324 LYYRLNVFPIKVPALKNRKEDIPYLCANLI----AQLNKRLGKNLKGLSKKAITQLQAYDWPGNIRELQNVLEREAI-LS 398
Cdd:TIGR02329 372 LFYRLSILRIALPPLRERPGDILPLAAEYLvqaaAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALeLS 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 399 NQAVLQLSQPLQAggevVINPSLTldEAQKQHITSVLALSHW-------------QISGDKGAAVK-LGLPESTLRSKMR 464
Cdd:TIGR02329 452 AMPAGALTPDVLR----ALAPELA--EASGKGKTSALSLRERsrvealavraaleRFGGDRDAAAKaLGISRTTLWRRLK 525
|
.
gi 743333903 465 K 465
Cdd:TIGR02329 526 A 526
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
159-429 |
6.97e-79 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 252.45 E-value: 6.97e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 159 NEDWQDSgLVGQSHIFQTMLDQIKLVSETDSTVLILGENGTGKELVARNLYRLSKRSEQAFIKVNCAAFTPSLLESELFG 238
Cdd:PRK15115 129 DERWREA-IVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFG 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 239 HEKGAFTGANERRKGRFELADKGTLFLDEIAELPLEAQSKLLRVLQEQEFERVGGSNTLKVNIRVIAATNRDLWEMVQKG 318
Cdd:PRK15115 208 HARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARG 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 319 TFRIDLYYRLNVFPIKVPALKNRKEDIPYLCANLIAQLNKRLGKNLKGLSKKAITQLQAYDWPGNIRELQNVLEREAILS 398
Cdd:PRK15115 288 EFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT 367
|
250 260 270
....*....|....*....|....*....|..
gi 743333903 399 NQAVLQLSQPLQA-GGEVVINPslTLDEAQKQ 429
Cdd:PRK15115 368 SSPVISDALVEQAlEGENTALP--TFVEARNQ 397
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
165-390 |
1.77e-76 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 247.09 E-value: 1.77e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 165 SGLVGQSHIFQTMLDQIKLVSETDSTVLILGENGTGKELVARNLYRLSKRSEQAFIKVNCAAFTPSLLESELFGHEKGAF 244
Cdd:PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAF 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 245 TGANERRKGRFELADKGTLFLDEIAELPLEAQSKLLRVLQEQEFERVGGSNTLKVNIRVIAATNRDLWEMVQKGTFRIDL 324
Cdd:PRK10923 218 TGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 743333903 325 YYRLNVFPIKVPALKNRKEDIPYLCANLIAQLNKRLGKNLKGLSKKAITQLQAYDWPGNIRELQNV 390
Cdd:PRK10923 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENT 363
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
12-468 |
3.86e-65 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 218.40 E-value: 3.86e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 12 LLNAVGEGIYGFDLSGNAVFVNPAAERMTGWCAEELLGKKIHQYHHHTHadgtpypadecqiYCTMFDGKRREVKNE-VF 90
Cdd:PRK10820 85 LLEALPEPVLSIDMKGKVELANPASCQLFGQSEEKLRNHTAAQLINGFN-------------FLRWLESEPQDSHNEhVV 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 91 WRkdGSSFAVQYTstPVYKND-----KLIGAVAVFRD-ISLQQQTQNalqeaLTqvkhlseqlkdennyliaeLNEDWQD 164
Cdd:PRK10820 152 IN--GQDFLMEIT--PVYLQDendqhVLVGAVVMLRStARMGRQLQN-----LA-------------------VNDDSAF 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 165 SGLVGQSHIFQTMLDQIKLVSETDSTVLILGENGTGKELVARNLYRLSKRSEQAFIKVNCAAFTPSLLESELFGHEKGAF 244
Cdd:PRK10820 204 SQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAY 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 245 TGANERRKGRFELADKGTLFLDEIAELPLEAQSKLLRVLQEQEFERVGGSNTLKVNIRVIAATNRDLWEMVQKGTFRIDL 324
Cdd:PRK10820 284 PNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDL 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 325 YYRLNVFPIKVPALKNRKEDIPYLCANLIAQLNKRLGKNLKGLSKKAITQLQAYDWPGNIRELQNVLEReailsnqAVLQ 404
Cdd:PRK10820 364 YYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYR-------ALTQ 436
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 743333903 405 LS--------------QPLQAGGEVVINPSltLDEAQKQHITSVLALSHWQISGDKGAAVKLGLPESTLRSKMRKLGI 468
Cdd:PRK10820 437 LEgyelrpqdillpdyDAAVAVGEDAMEGS--LDEITSRFERSVLTRLYRNYPSTRKLAKRLGVSHTAIANKLREYGL 512
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
189-468 |
2.45e-57 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 200.29 E-value: 2.45e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 189 STVLILGENGTGKELVARNLYRLSKRSEQAFIKVNCAAFTPSLLESELFGhekGAFTGANERRKGRFELADKGTLFLDEI 268
Cdd:PRK11388 349 FPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLG---SDRTDSENGRLSKFELAHGGTLFLEKV 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 269 AELPLEAQSKLLRVLQEQEFERVGGSNTLKVNIRVIAATNRDLWEMVQKGTFRIDLYYRLNVFPIKVPALKNRKEDIPYL 348
Cdd:PRK11388 426 EYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPAL 505
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 349 CANLIAQLNKRLGKNLKgLSKKAITQLQAYDWPGNIRELQNVLEREAILSNQAVLQLSQ-PL-----QAGGEVVINP--- 419
Cdd:PRK11388 506 VNNKLRSLEKRFSTRLK-IDDDALARLVSYRWPGNDFELRSVIENLALSSDNGRIRLSDlPEhlfteQATDDVSATRlst 584
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 743333903 420 SLTLDEAQKQHITSVLALSHWQISgdkGAAVKLGLPESTLRSKMRKLGI 468
Cdd:PRK11388 585 SLSLAELEKEAIINAAQVCGGRIQ---EMAALLGIGRTTLWRKMKQHGI 630
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
174-400 |
1.39e-44 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 163.46 E-value: 1.39e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 174 FQTMLDQIKLV-SETDSTVLILGENGTGKELVARNLYRLSKRSEQ---AFIKVNCAAFTPSLLESELFGHEKGAFTGANE 249
Cdd:COG4650 193 FNRLIEQIERVaIRSRAPILLTGPTGAGKSQLARRIYELKKARHQvsgRFVEVNCATLRGDGAMSALFGHVKGAFTGAVS 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 250 RRKGRFELADKGTLFLDEIAELPLEAQSKLLRVLQEQEFERVGGSNTLKVNIRVIAATNRDLWEMVQKGTFRIDLYYRLN 329
Cdd:COG4650 273 DRAGLLRSADGGVLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLLARIN 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 330 VFPIKVPALKNRKEDIPylcANL---IAQLNKRLGKNLKgLSKKAitqLQAY---------DWPGNIRELQNVLEREAIL 397
Cdd:COG4650 353 LWTFRLPGLAERREDIE---PNLdyeLARFAREQGRRVR-FNKEA---RARYlafatspeaLWSGNFRDLNASVTRMATL 425
|
...
gi 743333903 398 SNQ 400
Cdd:COG4650 426 AEG 428
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
191-390 |
3.11e-34 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 136.39 E-value: 3.11e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 191 VLILGENGTGKELVARNLYRLSK----RSEQA-FIKVNCA--AFTPSLLESELFGHEKGAFTGANERRKGRFELADKGTL 263
Cdd:COG1221 133 TLILGPTGVGKSFFAELMYEYAIeigvLPEDApFVVFNCAdyANNPQLLMSQLFGYVKGAFTGADKDKEGLIEKADGGIL 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 264 FLDEIAELPLEAQSKLLRVLQEQEFERVGGS-NTLKVNIRVIAATNRDLwEMVQKGTF--RIdlyyrlnvfP--IKVPAL 338
Cdd:COG1221 213 FLDEVHRLPPEGQEMLFTFMDKGIYRRLGETeKTRKANVRIIFATTEDP-ESSLLKTFlrRI---------PmvIKLPSL 282
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 743333903 339 KNR--KEDIpYLCANLIAQLNKRLGKNLKgLSKKAITQLQAYDWPGNIRELQNV 390
Cdd:COG1221 283 EERslEERL-ELIKHFFKEEAKRLNKPIK-VSKEVLKALLLYDCPGNIGQLKSD 334
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
185-329 |
6.04e-24 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 97.60 E-value: 6.04e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 185 SETDSTVLILGENGTGKELVARNLYRLSKRSEQAFIKVNCAAFTPSLLESELFGHEkgaftgANERRKGRFELADKGTLF 264
Cdd:cd00009 16 LPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF------LVRLLFELAEKAKPGVLF 89
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 743333903 265 LDEIAELPLEAQSKLLRVLQEQEFERVGgsntlKVNIRVIAATNRDLWemvqkGTFRIDLYYRLN 329
Cdd:cd00009 90 IDEIDSLSRGAQNALLRVLETLNDLRID-----RENVRVIGATNRPLL-----GDLDRALYDRLD 144
|
|
| PAS |
COG2202 |
PAS domain [Signal transduction mechanisms]; |
11-163 |
1.16e-19 |
|
PAS domain [Signal transduction mechanisms];
Pssm-ID: 441804 [Multi-domain] Cd Length: 258 Bit Score: 88.54 E-value: 1.16e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 11 LLLNAVGEGIYGFDLSGNAVFVNPAAERMTGWCAEELLGKKIHQYHHHTHADGTPYPADECQiyctmfdgKRREVKNEVF 90
Cdd:COG2202 15 ALVESSPDAIIITDLDGRILYVNPAFERLTGYSAEELLGKTLRDLLPPEDDDEFLELLRAAL--------AGGGVWRGEL 86
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 743333903 91 W--RKDGSSFAVQYTSTPVY-KNDKLIGAVAVFRDISLQQQTQNALQEALTQVKHLSEQLKDennyLIAELNEDWQ 163
Cdd:COG2202 87 RnrRKDGSLFWVELSISPVRdEDGEITGFVGIARDITERKRAEEALRESEERLRLLVENAPD----GIFVLDLDGR 158
|
|
| sensory_box |
TIGR00229 |
PAS domain S-box; The PAS domain was previously described. This sensory box, or S-box domain ... |
10-133 |
1.93e-17 |
|
PAS domain S-box; The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. [Regulatory functions, Small molecule interactions]
Pssm-ID: 272971 [Multi-domain] Cd Length: 124 Bit Score: 78.10 E-value: 1.93e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 10 KLLLNAVGEGIYGFDLSGNAVFVNPAAERMTGWCAEELLGKKIHQYHHHTHADgtpyPADECQIycTMFDGKRREVKNEV 89
Cdd:TIGR00229 6 RAIFESSPDAIIVIDLEGNILYVNPAFEEIFGYSAEELIGRNVLELIPEEDRE----EVRERIE--RRLEGEPEPVSEER 79
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 743333903 90 -FWRKDGSSFAVQYTSTPVYKNDKLIGAVAVFRDISLQQQTQNAL 133
Cdd:TIGR00229 80 rVRRKDGSEIWVEVSVSPIRTNGGELGVVGIVRDITERKEAEEAL 124
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
168-338 |
1.31e-16 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 76.23 E-value: 1.31e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 168 VGQSHIFQTMLDQIKLVSETDSTVLILGENGTGKELVARNLYRLSKRSEQAFIKVNCAAFTPSLLESelfghekgaftga 247
Cdd:pfam14532 1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLELLEQ------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 248 nerrkgrfelADKGTLFLDEIAELPLEAQSKLLRVLQEQEFERVggsntlkvniRVIAATNRDLWEMVQKGTFRIDLYYR 327
Cdd:pfam14532 68 ----------AKGGTLYLKDIADLSKALQKGLLLLLAKAEGYRV----------RLVCTSSKDLPQLAAAGLFDEQLYFE 127
|
170
....*....|.
gi 743333903 328 LNVFPIKVPAL 338
Cdd:pfam14532 128 LSALRLHVPPL 138
|
|
| NtrB |
COG3852 |
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms]; |
10-136 |
8.40e-16 |
|
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms];
Pssm-ID: 443061 [Multi-domain] Cd Length: 361 Bit Score: 78.73 E-value: 8.40e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 10 KLLLNAVGEGIYGFDLSGNAVFVNPAAERMTGWCAEELLGKKIHQYHhhthadgtPYPADECQIYCTMFDGKRREVKNEV 89
Cdd:COG3852 10 RAILDSLPDAVIVLDADGRITYVNPAAERLLGLSAEELLGRPLAELF--------PEDSPLRELLERALAEGQPVTEREV 81
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 743333903 90 FW-RKDGSSFAVQYTSTPVYKNDKLIGAVAVFRDISLQQQTQNALQEA 136
Cdd:COG3852 82 TLrRKDGEERPVDVSVSPLRDAEGEGGVLLVLRDITERKRLERELRRA 129
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
190-328 |
5.86e-14 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 68.94 E-value: 5.86e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 190 TVLILGENGTGKELVARNLYRLSKRSEQAFIKVNCAAFTPSLLE--SELFGHEKGAFTGANERRKGRFELADK---GTLF 264
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDqlLLIIVGGKKASGSGELRLRLALALARKlkpDVLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 743333903 265 LDEIAELPLEAQSKLLRVLqeqEFERVGGSNTLKVNIRVIAATNR--DLWEMVQKGTFRIDLYYRL 328
Cdd:smart00382 84 LDEITSLLDAEQEALLLLL---EELRLLLLLKSEKNLTVILTTNDekDLGPALLRRRFDRRIVLLL 146
|
|
| PAS |
COG2202 |
PAS domain [Signal transduction mechanisms]; |
10-133 |
6.16e-13 |
|
PAS domain [Signal transduction mechanisms];
Pssm-ID: 441804 [Multi-domain] Cd Length: 258 Bit Score: 68.51 E-value: 6.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 10 KLLLNAVGEGIYGFDLSGNAVFVNPAAERMTGWCAEELLGKKIHQYHHHTHADgtpypaDECQIYCTMFDGKRREVKNEV 89
Cdd:COG2202 140 RLLVENAPDGIFVLDLDGRILYVNPAAEELLGYSPEELLGKSLLDLLHPEDRE------RLLELLRRLLEGGRESYELEL 213
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 743333903 90 -FWRKDGSSFAVQYTSTPVYKNDKLIGAVAVFRDISLQQQTQNAL 133
Cdd:COG2202 214 rLKDGDGRWVWVEASAVPLRDGGEVIGVLGIVRDITERKRAEEAL 258
|
|
| PRK09776 |
PRK09776 |
putative diguanylate cyclase; Provisional |
13-187 |
2.24e-12 |
|
putative diguanylate cyclase; Provisional
Pssm-ID: 182070 [Multi-domain] Cd Length: 1092 Bit Score: 69.70 E-value: 2.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 13 LNAVGEGIYGFDLSGNAVFVNPAAERMTGWCAEELLGKKIHQYHHHTHAD-GTPYPADEcqiYCTMfdgKRREVKNE--- 88
Cdd:PRK09776 542 LDSIGEAVVCTDMAMKVTFMNPVAEKMTGWTQEEALGVPLLTVLHITFGDnGPLMENIY---SCLT---SRSAAYLEqdv 615
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 89 VFWRKDGSSFAVQYTSTPVYKND-KLIGAVAVFRDIS-----LQQQTQNALQEALTqvkHLSEQLKDENnyliaELNEDW 162
Cdd:PRK09776 616 VLHCRSGGSYDVHYSITPLSTLDgENIGSVLVIQDVTesrkmLRQLSYSASHDALT---HLANRASFEK-----QLRRLL 687
|
170 180
....*....|....*....|....*.
gi 743333903 163 QDSGLVGQSHIFQTM-LDQIKLVSET 187
Cdd:PRK09776 688 QTVNSTHQRHALVFIdLDRFKAVNDS 713
|
|
| KinE |
COG5809 |
Sporulation sensor histidine kinase E [Cell cycle control, cell division, chromosome ... |
10-140 |
5.93e-12 |
|
Sporulation sensor histidine kinase E [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 444511 [Multi-domain] Cd Length: 489 Bit Score: 67.69 E-value: 5.93e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 10 KLLLNAVGEGIYGFDLSGNAVFVNPAAERMTGWCAEELLGKKIHQYHHhthadgtPYPADECQIYCTMFDGKRREVKNEV 89
Cdd:COG5809 144 RLIFNHSPDGIIVTDLDGRIIYANPAACKLLGISIEELIGKSILELIH-------SDDQENVAAFISQLLKDGGIAQGEV 216
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 743333903 90 -FWRKDGSSFAVQYTSTPVYKNDKLIGAVAVFRDISLQQQTQNAL--QEALTQV 140
Cdd:COG5809 217 rFWTKDGRWRLLEASGAPIKKNGEVDGIVIIFRDITERKKLEELLrkSEKLSVV 270
|
|
| PAS |
pfam00989 |
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ... |
7-123 |
1.16e-11 |
|
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. This domain can bind gases (O2, CO and NO), FAD, 4-hydroxycinnamic acid and NAD+ (Matilla et.al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 395786 [Multi-domain] Cd Length: 113 Bit Score: 61.28 E-value: 1.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 7 NDPKLLLNAVGEGIYGFDLSGNAVFVNPAAERMTGWCAEELLGKKIHQYHHHTHADGTPYpadecQIYCTMFDGKRREVK 86
Cdd:pfam00989 1 EDLRAILESLPDGIFVVDEDGRILYVNAAAEELLGLSREEVIGKSLLDLIPEEDDAEVAE-----LLRQALLQGEESRGF 75
|
90 100 110
....*....|....*....|....*....|....*...
gi 743333903 87 NEVFWRKDGSSFAVQYTSTPVY-KNDKLIGAVAVFRDI 123
Cdd:pfam00989 76 EVSFRVPDGRPRHVEVRASPVRdAGGEILGFLGVLRDI 113
|
|
| PRK13560 |
PRK13560 |
hypothetical protein; Provisional |
12-136 |
1.33e-11 |
|
hypothetical protein; Provisional
Pssm-ID: 106506 [Multi-domain] Cd Length: 807 Bit Score: 67.00 E-value: 1.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 12 LLNAVGEGIYGFDLSGNAVFV-NPAAERMTGWCAEELLGKKI------------HQYHHHTHADGTPYPADECQIYCTMF 78
Cdd:PRK13560 337 IIEAAPIAAIGLDADGNICFVnNNAAERMLGWSAAEVMGKPLpgmdpelneefwCGDFQEWYPDGRPMAFDACPMAKTIK 416
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 743333903 79 DGKRREVKNEVFWRKDGSSFAVQYTSTPVYKND-KLIGAVAVFRDISLQQQTQNALQEA 136
Cdd:PRK13560 417 GGKIFDGQEVLIEREDDGPADCSAYAEPLHDADgNIIGAIALLVDITERKQVEEQLLLA 475
|
|
| PAS_9 |
pfam13426 |
PAS domain; This domain is found in many signalling proteins in which it functions as a sensor ... |
26-124 |
6.67e-11 |
|
PAS domain; This domain is found in many signalling proteins in which it functions as a sensor domain. It recognizes FMN, Zn(II), FAD and riboflavin (MAtilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 463873 [Multi-domain] Cd Length: 93 Bit Score: 58.63 E-value: 6.67e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 26 SGNAVFVNPAAERMTGWCAEELLGKKIHQYHHHthadgtpypADECQIYCTMFDGKRREVKNEVFW-RKDGSSFAVQYTS 104
Cdd:pfam13426 1 DGRIIYVNDAALRLLGYTREELLGKSITDLFAE---------PEDSERLREALREGKAVREFEVVLyRKDGEPFPVLVSL 71
|
90 100
....*....|....*....|.
gi 743333903 105 TPVYKNDK-LIGAVAVFRDIS 124
Cdd:pfam13426 72 APIRDDGGeLVGIIAILRDIT 92
|
|
| PAS |
cd00130 |
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ... |
17-123 |
1.13e-10 |
|
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Pssm-ID: 238075 [Multi-domain] Cd Length: 103 Bit Score: 58.41 E-value: 1.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 17 GEGIYGFDLSGNAVFVNPAAERMTGWCAEELLGKKIHQYHHhthadgtpyPADECQIYCTMFDGKRREVKNEV---FWRK 93
Cdd:cd00130 2 PDGVIVLDLDGRILYANPAAEQLLGYSPEELIGKSLLDLIH---------PEDREELRERLENLLSGGEPVTLevrLRRK 72
|
90 100 110
....*....|....*....|....*....|.
gi 743333903 94 DGSSFAVQYTSTPVYKND-KLIGAVAVFRDI 123
Cdd:cd00130 73 DGSVIWVLVSLTPIRDEGgEVIGLLGVVRDI 103
|
|
| KinE |
COG5809 |
Sporulation sensor histidine kinase E [Cell cycle control, cell division, chromosome ... |
18-163 |
9.19e-09 |
|
Sporulation sensor histidine kinase E [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 444511 [Multi-domain] Cd Length: 489 Bit Score: 57.29 E-value: 9.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 18 EGIYGFDLSGNAVFVNPAAERMTGWCAEELLGKKIHQYHHHThadgtpYPADECQIYCTMFDGKRREVKNEVFWRKDGSS 97
Cdd:COG5809 26 DAILILDLEGKILKVNPAAERIFGYTEDELLGTNILDFLHPD------DEKELREILKLLKEGESRDELEFELRHKNGKR 99
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 743333903 98 FAVQYTSTPVYK-NDKLIGAVAVFRDISLQQQTQNALQEalTQVKHlsEQLKDENNYLIAELNEDWQ 163
Cdd:COG5809 100 LEFSSKLSPIFDqNGDIEGMLAISRDITERKRMEEALRE--SEEKF--RLIFNHSPDGIIVTDLDGR 162
|
|
| PAS |
smart00091 |
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ... |
11-62 |
6.75e-08 |
|
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels.
Pssm-ID: 214512 Cd Length: 67 Bit Score: 49.32 E-value: 6.75e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 743333903 11 LLLNAVGEGIYGFDLSGNAVFVNPAAERMTGWCAEELLGKKIHQYHHHTHAD 62
Cdd:smart00091 5 AILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGKSLLELIHPEDRE 56
|
|
| CitA |
COG3290 |
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction ... |
2-147 |
1.02e-07 |
|
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction mechanisms];
Pssm-ID: 442519 [Multi-domain] Cd Length: 389 Bit Score: 54.08 E-value: 1.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 2 IKQFLNDPKLLLNAVGEGIYGFDLSGNAVFVNPAAERMTGWcaeELLGKKIHQYHHHTHADGTpypadecqiyctmfdgk 81
Cdd:COG3290 79 IARLVEEREAVLESIREGVIAVDRDGRITLINDAARRLLGL---DAIGRPIDEVLAEVLETGE----------------- 138
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 743333903 82 rrevKNEVFWRKDgssFAVQYTSTPVYKNDKLIGAVAVFRDISLQQQtqnaLQEALTQVKHLSEQL 147
Cdd:COG3290 139 ----RDEEILLNG---RVLVVNRVPIRDDGRVVGAVATFRDRTELER----LEEELEGVKELAEAL 193
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
191-309 |
1.10e-07 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 50.75 E-value: 1.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 191 VLILGENGTGKELVARNL-YRLSKRSEQAfikVNCAAFTPsllESELFGH-----EKGAFTGANERRKGRfelaDKGTLF 264
Cdd:pfam07728 2 VLLVGPPGTGKTELAERLaAALSNRPVFY---VQLTRDTT---EEDLFGRrnidpGGASWVDGPLVRAAR----EGEIAV 71
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 743333903 265 LDEIAELPLEAQSKLLRVLQEQEFERVGGSNTLKV---NIRVIAATNR 309
Cdd:pfam07728 72 LDEINRANPDVLNSLLSLLDERRLLLPDGGELVKAapdGFRLIATMNP 119
|
|
| KinA |
COG5805 |
Sporulation sensor histidine kinase A (Stage II sporulation protein SpoIIF/SpoIIJ) [Cell cycle ... |
10-129 |
1.62e-07 |
|
Sporulation sensor histidine kinase A (Stage II sporulation protein SpoIIF/SpoIIJ) [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 444507 [Multi-domain] Cd Length: 496 Bit Score: 53.58 E-value: 1.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 10 KLLLNAVGEGIYGFDLSGNAVFVNPAAERMTGWCAEELLGKKIHQYHHhthadgtpyPADECQIY----CTMFDGKRREV 85
Cdd:COG5805 160 QTLIENSPDLICVIDTDGRILFINESIERLFGAPREELIGKNLLELLH---------PCDKEEFKerieSITEVWQEFII 230
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 743333903 86 KNEVFwRKDGSSFAVQYTSTPVYKND-KLIGAVAVFRDISLQQQT 129
Cdd:COG5805 231 EREII-TKDGRIRYFEAVIVPLIDTDgSVKGILVILRDITEKKEA 274
|
|
| MoxR |
COG0714 |
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ... |
191-321 |
2.22e-06 |
|
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 440478 [Multi-domain] Cd Length: 292 Bit Score: 49.40 E-value: 2.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 191 VLILGENGTGKELVARNLYRLSKRSeqaFIKVNcaaFTPSLLESELFGHEKgaftgaNERRKGRFELaDKGTLF-----L 265
Cdd:COG0714 34 LLLEGVPGVGKTTLAKALARALGLP---FIRIQ---FTPDLLPSDILGTYI------YDQQTGEFEF-RPGPLFanvllA 100
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 743333903 266 DEIAELPLEAQSKLLRVLQEQEFERVGGSNTLKVNIRVIAATNRdlweMVQKGTFR 321
Cdd:COG0714 101 DEINRAPPKTQSALLEAMEERQVTIPGGTYKLPEPFLVIATQNP----IEQEGTYP 152
|
|
| NtrY |
COG5000 |
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ... |
12-135 |
2.59e-06 |
|
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];
Pssm-ID: 444024 [Multi-domain] Cd Length: 422 Bit Score: 49.58 E-value: 2.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 12 LLNAVGEGIYGFDLSGNAVFVNPAAERMTGWCAEELLGKKIHQYHHhthadgtpypadECQIYCTMFDGKRREVKNEVFW 91
Cdd:COG5000 95 ILENLPAGVIVLDADGRITLANPAAERLLGIPLEELIGKPLEELLP------------ELDLAELLREALERGWQEEIEL 162
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 743333903 92 RKDGS-SFAVQYTSTPvykndkLIGAVAVFRDIS--LQQQTQNALQE 135
Cdd:COG5000 163 TRDGRrTLLVRASPLR------DDGYVIVFDDITelLRAERLAAWGE 203
|
|
| KinA |
COG5805 |
Sporulation sensor histidine kinase A (Stage II sporulation protein SpoIIF/SpoIIJ) [Cell cycle ... |
24-149 |
4.81e-06 |
|
Sporulation sensor histidine kinase A (Stage II sporulation protein SpoIIF/SpoIIJ) [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 444507 [Multi-domain] Cd Length: 496 Bit Score: 48.96 E-value: 4.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 24 DLSGNAVFVNPAAERMTGWCAEELLGKKIHQYHHhthadgtPYPADECQIYCTMFDGKRREVKNEVFWRKDGSSFAVQYT 103
Cdd:COG5805 51 NREGKVIYINPAMEKLLGYTSEEIIGKTIFDFLE-------KEYHYRVKTRIERLQKGYDVVMIEQIYCKDGELIYVEVK 123
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 743333903 104 STPVYKNDKLIgAVAVFRDISLQQQTQNALQEALTQVKHLSEQLKD 149
Cdd:COG5805 124 LFPIYNQNGQA-AILALRDITKKKKIEEILQEQEERLQTLIENSPD 168
|
|
| PRK11360 |
PRK11360 |
two-component system sensor histidine kinase AtoS; |
4-136 |
2.53e-05 |
|
two-component system sensor histidine kinase AtoS;
Pssm-ID: 236901 [Multi-domain] Cd Length: 607 Bit Score: 46.88 E-value: 2.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 4 QFLNDpkLLLNAVGEGIYGFDLSGNAVFVNPAAERMTGWCAEELLGKKIHqyhhhthadgTPYPADEcQIYCTMFDG--K 81
Cdd:PRK11360 261 RSLNE--LILESIADGVIAIDRQGKITTMNPAAEVITGLQRHELVGKPYS----------ELFPPNT-PFASPLLDTleH 327
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 743333903 82 RREVKnEVFWRKDGSSFAVQYT-STPVYKN--DKLIGAVAVFRDISLQQQTQNALQEA 136
Cdd:PRK11360 328 GTEHV-DLEISFPGRDRTIELSvSTSLLHNthGEMIGALVIFSDLTERKRLQRRVARQ 384
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
191-309 |
3.34e-05 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 43.35 E-value: 3.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 191 VLILGENGTGKELVARNLYRLSKRSeqaFIKVNCAAFTPSlleselfghekgaFTGANERR-KGRFELADKGT---LFLD 266
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAP---FIEISGSELVSK-------------YVGESEKRlRELFEAAKKLApcvIFID 64
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 743333903 267 EI-----------AELPLEAQSKLLRVLqeQEFERVGGsntlkvNIRVIAATNR 309
Cdd:pfam00004 65 EIdalagsrgsggDSESRRVVNQLLTEL--DGFTSSNS------KVIVIAATNR 110
|
|
| PAS_4 |
pfam08448 |
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ... |
13-124 |
4.20e-04 |
|
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. This domain is associated to signalling systems and works as a signal sensor domain. It recognizes differently substituted aromatic hydrocarbons, oxygen, different dodecanoic acids, autoinducers, 3,5-dimethyl-pyrazin-2-ol and N-alanyl-aminoacetone (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 312075 [Multi-domain] Cd Length: 110 Bit Score: 39.70 E-value: 4.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 13 LNAVGEGIYGFDLSGNAVFVNPAAERMTGWCAEELLGKKIHQYHHHTHAdgtpypADECQIYCTMFDGKRReVKNEVFWR 92
Cdd:pfam08448 1 LDSLPDALAVLDPDGRVRYANAAAAELFGLPPEELLGKTLAELLPPEDA------ARLERALRRALEGEEP-IDFLEELL 73
|
90 100 110
....*....|....*....|....*....|...
gi 743333903 93 KDGSSFAVQYTSTPVYKND-KLIGAVAVFRDIS 124
Cdd:pfam08448 74 LNGEERHYELRLTPLRDPDgEVIGVLVISRDIT 106
|
|
| PAC |
smart00086 |
Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain); PAC motif ... |
90-124 |
8.61e-04 |
|
Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain); PAC motif occurs C-terminal to a subset of all known PAS motifs. It is proposed to contribute to the PAS domain fold.
Pssm-ID: 197509 Cd Length: 43 Bit Score: 37.16 E-value: 8.61e-04
10 20 30
....*....|....*....|....*....|....*.
gi 743333903 90 FWRKDGSSFAVQYTSTPVY-KNDKLIGAVAVFRDIS 124
Cdd:smart00086 6 LRRKDGSYIWVLVSASPIRdEDGEVEGILGVVRDIT 41
|
|
| PRK11086 |
PRK11086 |
sensory histidine kinase DcuS; Provisional |
12-174 |
1.36e-03 |
|
sensory histidine kinase DcuS; Provisional
Pssm-ID: 236839 [Multi-domain] Cd Length: 542 Bit Score: 41.05 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 12 LLNAVGEGIYGFDLSGNAVFVNPAAERMTGWCA---EELLGKKIHQYHHHTH-----ADGTPYPADECQIYctmfdgKRR 83
Cdd:PRK11086 226 MLQSIKEGVIAVDDRGEVTLINDEAKRLFNYKKgleDDPLGTDVESWMPVSRlkevlRTGTPRRDEEININ------GRL 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 84 EVKNEVfwrkdgssfavqytstPVYKNDKLIGAVAVFRDislqqqtqnalqeaLTQVKHLSEQLKDENNYLIAelnedwq 163
Cdd:PRK11086 300 LLTNTV----------------PVRVNGEIIGAIATFRD--------------KTEVRQLAQRLDGMVNYADA------- 342
|
170
....*....|.
gi 743333903 164 dsgLVGQSHIF 174
Cdd:PRK11086 343 ---LRAQSHEF 350
|
|
| PRK11359 |
PRK11359 |
cyclic-di-GMP phosphodiesterase; Provisional |
30-133 |
1.44e-03 |
|
cyclic-di-GMP phosphodiesterase; Provisional
Pssm-ID: 183097 [Multi-domain] Cd Length: 799 Bit Score: 41.29 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 30 VFVNPAAERMTGWCAEELLGKKIH------------QYHHHTHADGTPYPAdecqiyctmfdGKRREVKNEvfwRKDGSS 97
Cdd:PRK11359 35 LFFNPAAEKLWGYKREEVIGNNIDmliprdlrpahpEYIRHNREGGKARVE-----------GMSRELQLE---KKDGSK 100
|
90 100 110
....*....|....*....|....*....|....*...
gi 743333903 98 FAVQYTSTPVYKNDKlIGAVAVFRDISLQ--QQTQNAL 133
Cdd:PRK11359 101 IWTRFALSKVSAEGK-VYYLALVRDASVEmaQKEQTRQ 137
|
|
| PRK13560 |
PRK13560 |
hypothetical protein; Provisional |
12-147 |
1.49e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 106506 [Multi-domain] Cd Length: 807 Bit Score: 41.20 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 12 LLNAVGEGIYGFDLSGNAVFVNPAAERMTGWCAEELLGKKIHQYhhhthadGTPYPADECQ-IYCTMFDGKRREVKNEVF 90
Cdd:PRK13560 209 LLDNIADPAFWKDEDAKVFGCNDAACLACGFRREEIIGMSIHDF-------APAQPADDYQeADAAKFDADGSQIIEAEF 281
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 91 WRKDGSSFAVQYT---STPVYKNDKLIGAVAVFRDISLQQQTQNALQEALTQVKHLSEQL 147
Cdd:PRK13560 282 QNKDGRTRPVDVIfnhAEFDDKENHCAGLVGAITDISGRRAAERELLEKEDMLRAIIEAA 341
|
|
| RecA-like_PAN_like |
cd19502 |
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily ... |
191-309 |
1.51e-03 |
|
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily contains ATPase subunits of the eukaryotic 26S proteasome, and of the archaeal proteasome which carry out ATP-dependent degradation of substrates of the ubiquitin-proteasome pathway. The eukaryotic 26S proteasome consists of a proteolytic 20S core particle (CP), and a 19S regulatory particle (RP) which provides the ATP-dependence and the specificity for ubiquitinated proteins. In the archaea the RP is a homohexameric complex of proteasome-activating nucleotidase (PAN). This subfamily also includes various eukaryotic 26S subunits including, proteasome 26S subunit, ATPase 2 (PSMC2, also known as S7 and MSS1) which is a member of the 19S RP and has a chaperone like activity; and proteasome 20S subunit alpha 6 (PSMA6, also known as IOTA, p27K, and PROS27) which is a member of the 20S CP. This RecA-like_PAN subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410910 [Multi-domain] Cd Length: 171 Bit Score: 39.24 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 191 VLILGENGTGKELVARnlyRLSKRSEQAFIKVNcaaftpsllESELFghEKgaFTGANERR-KGRFELADK---GTLFLD 266
Cdd:cd19502 40 VLLYGPPGTGKTLLAK---AVANHTDATFIRVV---------GSELV--QK--YIGEGARLvRELFEMAREkapSIIFID 103
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 743333903 267 EIAELPL-----------EAQSKLLRVLQEQE-FERVGgsntlkvNIRVIAATNR 309
Cdd:cd19502 104 EIDAIGAkrfdsgtggdrEVQRTMLELLNQLDgFDPRG-------NIKVIMATNR 151
|
|
| RecA-like_ClpB_Hsp104-like |
cd19499 |
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and ... |
167-347 |
7.51e-03 |
|
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and eukaryotic Heat shock protein 104 (Hsp104) are ATP-dependent molecular chaperones and essential proteins of the heat-shock response. ClpB/Hsp104 ATPases, in concert with the DnaK/Hsp70 chaperone system, disaggregate and reactivate aggregated proteins. This RecA-like_ClpB_Hsp104_like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410907 [Multi-domain] Cd Length: 178 Bit Score: 37.54 E-value: 7.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 167 LVGQSHIFQTMLDQIKLV-------SETDSTVLILGENGTGKELVARNLYRLSKRSEQAFIKVNCAAFTPSLLESELFG- 238
Cdd:cd19499 13 VVGQDEAVKAVSDAIRRAraglsdpNRPIGSFLFLGPTGVGKTELAKALAELLFGDEDNLIRIDMSEYMEKHSVSRLIGa 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743333903 239 -------HEKGAFTGANeRRKGRfeladkGTLFLDEIAELPLEAQSKLLRVLQEQEFE-----RVGGSNTLkvnirVIAA 306
Cdd:cd19499 93 ppgyvgyTEGGQLTEAV-RRKPY------SVVLLDEIEKAHPDVQNLLLQVLDDGRLTdshgrTVDFKNTI-----IIMT 160
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 743333903 307 TNrdlwemvqkgTFRidlyyrlnvfpikvPALKNRKEDIPY 347
Cdd:cd19499 161 SN----------HFR--------------PEFLNRIDEIVV 177
|
|
| |
