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Conserved domains on  [gi|763847418|gb|KJC07156|]
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hypothetical protein TN42_18950 [Citrobacter freundii]

Protein Classification

YegP family protein( domain architecture ID 10538412)

YegP family protein is a DUF1508 domain-containing protein; similar to Escherichia coli UPF0339 protein YegP

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1508 pfam07411
Domain of unknown function (DUF1508); This family represents a series of bacterial domains of ...
 11-57 8.24e-20

Domain of unknown function (DUF1508); This family represents a series of bacterial domains of unknown function of around 50 residues in length. Members of this family are often found as tandem repeats and in some cases represent the whole protein. All member proteins are described as being hypothetical.


:

Pssm-ID: 429450  Cd Length: 47  Bit Score: 75.59  E-value: 8.24e-20
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 763847418   11 SDDQYRFVLKAGNGEIILTSELYTTKGAAEKGIASVQANSPLDERYE 57
Cdd:pfam07411   1 KNGKFRFRLKAANGEVIATSEGYSSKAAAENGIESVKKNAPDAEVVD 47
YegP COG3422
Uncharacterized conserved protein YegP, UPF0339 family [Function unknown];
55-110 1.41e-19

Uncharacterized conserved protein YegP, UPF0339 family [Function unknown];


:

Pssm-ID: 442648  Cd Length: 58  Bit Score: 75.23  E-value: 1.41e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 763847418  55 RYEKKTAANGKLHFNLKAANHQIIGSSQLYANEQSRETGITSVKTNGVSQTIKDKT 110
Cdd:COG3422    3 KFELYRDKDGEFRFRLKAANGQIIASSEGYASKAAAENGIESVKKNAPDAEVVDLT 58
 
Name Accession Description Interval E-value
DUF1508 pfam07411
Domain of unknown function (DUF1508); This family represents a series of bacterial domains of ...
 11-57 8.24e-20

Domain of unknown function (DUF1508); This family represents a series of bacterial domains of unknown function of around 50 residues in length. Members of this family are often found as tandem repeats and in some cases represent the whole protein. All member proteins are described as being hypothetical.


Pssm-ID: 429450  Cd Length: 47  Bit Score: 75.59  E-value: 8.24e-20
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 763847418   11 SDDQYRFVLKAGNGEIILTSELYTTKGAAEKGIASVQANSPLDERYE 57
Cdd:pfam07411   1 KNGKFRFRLKAANGEVIATSEGYSSKAAAENGIESVKKNAPDAEVVD 47
YegP COG3422
Uncharacterized conserved protein YegP, UPF0339 family [Function unknown];
55-110 1.41e-19

Uncharacterized conserved protein YegP, UPF0339 family [Function unknown];


Pssm-ID: 442648  Cd Length: 58  Bit Score: 75.23  E-value: 1.41e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 763847418  55 RYEKKTAANGKLHFNLKAANHQIIGSSQLYANEQSRETGITSVKTNGVSQTIKDKT 110
Cdd:COG3422    3 KFELYRDKDGEFRFRLKAANGQIIASSEGYASKAAAENGIESVKKNAPDAEVVDLT 58
YegP COG3422
Uncharacterized conserved protein YegP, UPF0339 family [Function unknown];
5-57 3.50e-18

Uncharacterized conserved protein YegP, UPF0339 family [Function unknown];


Pssm-ID: 442648  Cd Length: 58  Bit Score: 71.76  E-value: 3.50e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 763847418   5 FELSKSSDDQYRFVLKAGNGEIILTSELYTTKGAAEKGIASVQANSPLDERYE 57
Cdd:COG3422    4 FELYRDKDGEFRFRLKAANGQIIASSEGYASKAAAENGIESVKKNAPDAEVVD 56
DUF1508 pfam07411
Domain of unknown function (DUF1508); This family represents a series of bacterial domains of ...
 62-108 2.49e-16

Domain of unknown function (DUF1508); This family represents a series of bacterial domains of unknown function of around 50 residues in length. Members of this family are often found as tandem repeats and in some cases represent the whole protein. All member proteins are described as being hypothetical.


Pssm-ID: 429450  Cd Length: 47  Bit Score: 66.74  E-value: 2.49e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 763847418   62 ANGKLHFNLKAANHQIIGSSQLYANEQSRETGITSVKTNGVSQTIKD 108
Cdd:pfam07411   1 KNGKFRFRLKAANGEVIATSEGYSSKAAAENGIESVKKNAPDAEVVD 47
 
Name Accession Description Interval E-value
DUF1508 pfam07411
Domain of unknown function (DUF1508); This family represents a series of bacterial domains of ...
 11-57 8.24e-20

Domain of unknown function (DUF1508); This family represents a series of bacterial domains of unknown function of around 50 residues in length. Members of this family are often found as tandem repeats and in some cases represent the whole protein. All member proteins are described as being hypothetical.


Pssm-ID: 429450  Cd Length: 47  Bit Score: 75.59  E-value: 8.24e-20
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 763847418   11 SDDQYRFVLKAGNGEIILTSELYTTKGAAEKGIASVQANSPLDERYE 57
Cdd:pfam07411   1 KNGKFRFRLKAANGEVIATSEGYSSKAAAENGIESVKKNAPDAEVVD 47
YegP COG3422
Uncharacterized conserved protein YegP, UPF0339 family [Function unknown];
55-110 1.41e-19

Uncharacterized conserved protein YegP, UPF0339 family [Function unknown];


Pssm-ID: 442648  Cd Length: 58  Bit Score: 75.23  E-value: 1.41e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 763847418  55 RYEKKTAANGKLHFNLKAANHQIIGSSQLYANEQSRETGITSVKTNGVSQTIKDKT 110
Cdd:COG3422    3 KFELYRDKDGEFRFRLKAANGQIIASSEGYASKAAAENGIESVKKNAPDAEVVDLT 58
YegP COG3422
Uncharacterized conserved protein YegP, UPF0339 family [Function unknown];
5-57 3.50e-18

Uncharacterized conserved protein YegP, UPF0339 family [Function unknown];


Pssm-ID: 442648  Cd Length: 58  Bit Score: 71.76  E-value: 3.50e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 763847418   5 FELSKSSDDQYRFVLKAGNGEIILTSELYTTKGAAEKGIASVQANSPLDERYE 57
Cdd:COG3422    4 FELYRDKDGEFRFRLKAANGQIIASSEGYASKAAAENGIESVKKNAPDAEVVD 56
DUF1508 pfam07411
Domain of unknown function (DUF1508); This family represents a series of bacterial domains of ...
 62-108 2.49e-16

Domain of unknown function (DUF1508); This family represents a series of bacterial domains of unknown function of around 50 residues in length. Members of this family are often found as tandem repeats and in some cases represent the whole protein. All member proteins are described as being hypothetical.


Pssm-ID: 429450  Cd Length: 47  Bit Score: 66.74  E-value: 2.49e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 763847418   62 ANGKLHFNLKAANHQIIGSSQLYANEQSRETGITSVKTNGVSQTIKD 108
Cdd:pfam07411   1 KNGKFRFRLKAANGEVIATSEGYSSKAAAENGIESVKKNAPDAEVVD 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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