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Conserved domains on  [gi|771165030|gb|KJN19571|]
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membrane protein [Enterobacter sichuanensis]

Protein Classification

PRK09967 family protein( domain architecture ID 11484538)

PRK09967 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK09967 PRK09967
OmpA family protein;
1-161 1.02e-114

OmpA family protein;


:

Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 321.54  E-value: 1.02e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 771165030   1 MLKRYFAPLVLASMVLAGCQSPpEGKFTPEQIAAMKSYGFNELNGDWSLGLSDTILFDKNDARLRPESETQIKSMASRLA 80
Cdd:PRK09967   1 MIKHLVAPLIFTSLILTGCQSP-QGKFTPEQVAAMQSYGFTESAGDWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 771165030  81 ETGLNHARMDGHTDNYGEESYNNALSLKRANAVADAWAKGANIPRSNLTTQGLGQKYPVASNSTPQGRAENRRVAVVIST 160
Cdd:PRK09967  80 STGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159


                 .
gi 771165030 161 P 161
Cdd:PRK09967 160 P 160
 
Name Accession Description Interval E-value
PRK09967 PRK09967
OmpA family protein;
1-161 1.02e-114

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 321.54  E-value: 1.02e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 771165030   1 MLKRYFAPLVLASMVLAGCQSPpEGKFTPEQIAAMKSYGFNELNGDWSLGLSDTILFDKNDARLRPESETQIKSMASRLA 80
Cdd:PRK09967   1 MIKHLVAPLIFTSLILTGCQSP-QGKFTPEQVAAMQSYGFTESAGDWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 771165030  81 ETGLNHARMDGHTDNYGEESYNNALSLKRANAVADAWAKGANIPRSNLTTQGLGQKYPVASNSTPQGRAENRRVAVVIST 160
Cdd:PRK09967  80 STGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159


                 .
gi 771165030 161 P 161
Cdd:PRK09967 160 P 160
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 54-158 7.93e-35

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 117.27  E-value: 7.93e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 771165030  54 TILFDKNDARLRPESETQIKSMASRLAETGLNHARMDGHTDNYGEESYNNALSLKRANAVADA-WAKGanIPRSNLTTQG 132
Cdd:cd07185    3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYlVSKG--VDASRITAVG 80

                         90       100
                 ....*....|....*....|....*.
gi 771165030 133 LGQKYPVASNSTPQGRAENRRVAVVI 158
Cdd:cd07185   81 YGESRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 51-161 2.24e-32

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 116.81  E-value: 2.24e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 771165030  51 LSDTILFDKNDARLRPESETQIKSMASRLAETGLNHARMDGHTDNYGEESYNNALSLKRANAVADAWAKgANIPRSNLTT 130
Cdd:COG2885  185 LLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVS-KGIPASRITA 263

                         90       100       110
                 ....*....|....*....|....*....|.
gi 771165030 131 QGLGQKYPVASNSTPQGRAENRRVAVVISTP 161
Cdd:COG2885  264 VGYGESRPVASNDTEEGRAKNRRVEIVVLKK 294
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 57-151 3.29e-17

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 72.01  E-value: 3.29e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 771165030   57 FDKNDARLRPESETQIKSMASRLAETGLNHA-RMDGHTDNYGEESYNNALSLKRANAVADA-WAKGanIPRSNLTTQGLG 134
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKNTiTIEGHTDTVGSAAYNWELSQRRAEAVRRYlVNFG--VPPSRISVVGYG 78

                          90
                  ....*....|....*..
gi 771165030  135 QKYPVASNSTPQGRAEN 151
Cdd:pfam00691  79 ATKPITDNKTPEGRARN 95
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 51-158 5.38e-17

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 72.72  E-value: 5.38e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 771165030   51 LSDTILFDKNDARLRPESETQIKSMASRLAETGLNhARMDGHTDNYGEESY----NNALSLKRANAVADAWAKGAnIPRS 126
Cdd:TIGR03350  28 LRGDELFASGSAEVRAEFEPLLLRIAKALAAVPGR-ITVVGHTDNVPIRTArfpsNWHLSEARAKAVADVLAQAG-GPAG 105

                          90       100       110
                  ....*....|....*....|....*....|..
gi 771165030  127 NLTTQGLGQKYPVASNSTPQGRAENRRVAVVI 158
Cdd:TIGR03350 106 RVRAEGRGDSEPIASNATAAGRARNRRVEIDV 137
 
Name Accession Description Interval E-value
PRK09967 PRK09967
OmpA family protein;
1-161 1.02e-114

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 321.54  E-value: 1.02e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 771165030   1 MLKRYFAPLVLASMVLAGCQSPpEGKFTPEQIAAMKSYGFNELNGDWSLGLSDTILFDKNDARLRPESETQIKSMASRLA 80
Cdd:PRK09967   1 MIKHLVAPLIFTSLILTGCQSP-QGKFTPEQVAAMQSYGFTESAGDWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 771165030  81 ETGLNHARMDGHTDNYGEESYNNALSLKRANAVADAWAKGANIPRSNLTTQGLGQKYPVASNSTPQGRAENRRVAVVIST 160
Cdd:PRK09967  80 STGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159


                 .
gi 771165030 161 P 161
Cdd:PRK09967 160 P 160
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 54-158 7.93e-35

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 117.27  E-value: 7.93e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 771165030  54 TILFDKNDARLRPESETQIKSMASRLAETGLNHARMDGHTDNYGEESYNNALSLKRANAVADA-WAKGanIPRSNLTTQG 132
Cdd:cd07185    3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYlVSKG--VDASRITAVG 80

                         90       100
                 ....*....|....*....|....*.
gi 771165030 133 LGQKYPVASNSTPQGRAENRRVAVVI 158
Cdd:cd07185   81 YGESRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 51-161 2.24e-32

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 116.81  E-value: 2.24e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 771165030  51 LSDTILFDKNDARLRPESETQIKSMASRLAETGLNHARMDGHTDNYGEESYNNALSLKRANAVADAWAKgANIPRSNLTT 130
Cdd:COG2885  185 LLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVS-KGIPASRITA 263

                         90       100       110
                 ....*....|....*....|....*....|.
gi 771165030 131 QGLGQKYPVASNSTPQGRAENRRVAVVISTP 161
Cdd:COG2885  264 VGYGESRPVASNDTEEGRAKNRRVEIVVLKK 294
MotB COG1360
Flagellar motor protein MotB [Cell motility];
42-160 1.57e-23

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 90.67  E-value: 1.57e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 771165030  42 ELNGDW-SLGLSDTILFDKNDARLRPESETQIKSMASRLAETGlNHARMDGHTDNY---GEESYNN-ALSLKRANAVADA 116
Cdd:COG1360   47 RITEEGlVIEIQDRVLFDSGSAELTPEGRELLDKIAAVLAEVP-NRIRVEGHTDNVpisTARFPSNwELSAARAAAVVRY 125

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 771165030 117 WAKGaNIPRSNLTTQGLGQKYPVASNSTPQGRAENRRVAVVIST 160
Cdd:COG1360  126 LIEG-GVPPERLSAVGYGDTRPLAPNDTPEGRARNRRVEIVILR 168
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 57-151 3.29e-17

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 72.01  E-value: 3.29e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 771165030   57 FDKNDARLRPESETQIKSMASRLAETGLNHA-RMDGHTDNYGEESYNNALSLKRANAVADA-WAKGanIPRSNLTTQGLG 134
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKNTiTIEGHTDTVGSAAYNWELSQRRAEAVRRYlVNFG--VPPSRISVVGYG 78

                          90
                  ....*....|....*..
gi 771165030  135 QKYPVASNSTPQGRAEN 151
Cdd:pfam00691  79 ATKPITDNKTPEGRARN 95
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 51-158 5.38e-17

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 72.72  E-value: 5.38e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 771165030   51 LSDTILFDKNDARLRPESETQIKSMASRLAETGLNhARMDGHTDNYGEESY----NNALSLKRANAVADAWAKGAnIPRS 126
Cdd:TIGR03350  28 LRGDELFASGSAEVRAEFEPLLLRIAKALAAVPGR-ITVVGHTDNVPIRTArfpsNWHLSEARAKAVADVLAQAG-GPAG 105

                          90       100       110
                  ....*....|....*....|....*....|..
gi 771165030  127 NLTTQGLGQKYPVASNSTPQGRAENRRVAVVI 158
Cdd:TIGR03350 106 RVRAEGRGDSEPIASNATAAGRARNRRVEIDV 137
PRK10510 PRK10510
OmpA family lipoprotein;
49-159 2.84e-16

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 72.60  E-value: 2.84e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 771165030  49 LGLSDTILFDKNDARLRPESETQIKSMASRLAETGLNHARMDGHTDNYGEESYNNALSLKRANAVADAWAkGANIPRSNL 128
Cdd:PRK10510 108 LNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALI-TQGVDASRI 186

                         90       100       110
                 ....*....|....*....|....*....|.
gi 771165030 129 TTQGLGQKYPVASNSTPQGRAENRRVAVVIS 159
Cdd:PRK10510 187 RTQGMGPANPIASNSTAEGKAQNRRVEITLS 217
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 51-159 8.06e-14

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 66.96  E-value: 8.06e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 771165030  51 LSDTILFDKNDARLRPESETQIKSMASRLAETGlNHARMDGHTDNYGEESY----NNALSLKRANAVADAWAkGANIPRS 126
Cdd:PRK09038 131 INSSLLFGSGDAMLSDQAFAILEKVAEVLKPAP-NPIHVEGFTDNVPIATAqfpsNWELSAARAASVVRLLA-DDGVAPS 208

                         90       100       110
                 ....*....|....*....|....*....|...
gi 771165030 127 NLTTQGLGQKYPVASNSTPQGRAENRRVAVVIS 159
Cdd:PRK09038 209 RLAAVGYGEFQPVADNDTAEGRARNRRVVLVIL 241
PRK08126 PRK08126
hypothetical protein; Provisional
 56-158 1.75e-12

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 63.94  E-value: 1.75e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 771165030  56 LFDKNDARLRPESETQIKSMASRLAETGlNHARMDGHTDNY----GEESYNNALSLKRANAVADAwAKGANIPRSNLTTQ 131
Cdd:PRK08126 326 MFVPGQATVNPAMGPLIAKIAREIARVG-GKVTVTGHTDNQpirsAQFASNLVLSEKRAAQVAQM-LQSAGVPASRLEAV 403

                         90       100
                 ....*....|....*....|....*..
gi 771165030 132 GLGQKYPVASNSTPQGRAENRRVAVVI 158
Cdd:PRK08126 404 GKGDAQPVADNRTPQGRAQNRRVEITV 430
motB PRK07734
flagellar motor protein MotB; Reviewed
 53-158 4.13e-12

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 62.07  E-value: 4.13e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 771165030  53 DTILFDKNDARLRPESETQIKSMASRLAetgLNHAR---MDGHTDNY----GEESYNNALSLKRANAVADAWAKGANIPR 125
Cdd:PRK07734 142 DNILFDSGKADVRLEDLPLAKEISNLLV---SNPPRnitISGHTDNVpianAQFASNWELSVMRAVNFMQVLLENKELDP 218

                         90       100       110
                 ....*....|....*....|....*....|...
gi 771165030 126 SNLTTQGLGQKYPVASNSTPQGRAENRRVAVVI 158
Cdd:PRK07734 219 EKFSAKGYGEYKPIASNDTAEGRAKNRRVEVLI 251
PRK06925 PRK06925
flagellar motor protein MotB;
49-161 1.21e-11

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 60.55  E-value: 1.21e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 771165030  49 LGLSDTILFDKNDARLRPESETQIKSMAsRLAETGLNHARMDGHTDNYGEESY----NNALSLKRANAVADAWAKGANIP 124
Cdd:PRK06925 114 LVLQEAVLFETGEADILKQAEPFLHKIG-VLLSTIPNDIKVEGHTDSRPISTYrypsNWELSAARASSVIRYFTSKEKLD 192

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 771165030 125 RSNLTTQGLGQKYPVASNSTPQGRAENRRVAVVISTP 161
Cdd:PRK06925 193 SSRFIAVGYADTKPVVPNTTEENMQENRRVEIVISDP 229
PRK07033 PRK07033
DotU family type VI secretion system protein;
56-158 2.81e-10

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 57.37  E-value: 2.81e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 771165030  56 LFDKNDARLRPESETQIKSMASRLAETGLNhARMDGHTDNYGEESY----NNALSLKRANAVADAWAKGANIPrSNLTTQ 131
Cdd:PRK07033 317 LFASASTSVRDRYQPVLARVADALNQVKGN-VLVTGYSDNVPIRTArfpsNWELSQARAQAVRALLAARLGQP-ERVTAE 394

                         90       100
                 ....*....|....*....|....*..
gi 771165030 132 GLGQKYPVASNSTPQGRAENRRVAVVI 158
Cdd:PRK07033 395 GRGDSDPVAPNDSAENRARNRRVEITL 421
PRK09040 PRK09040
hypothetical protein; Provisional
 49-154 3.84e-10

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 56.18  E-value: 3.84e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 771165030  49 LGLSDTILFDKNDARLRPESETQIKSMASRLAETGLNHARM---DGHTDNY----GEESY--NNALSLKRANAVADAWAK 119
Cdd:PRK09040  84 IGISGSVLFALNSDQLQPEGRELLKSLAGPLAAYLRARDEIlmvSGFTDDQpvraGNRRFadNWELSAQRALTVTRALID 163

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 771165030 120 gANIPRSNLTTQGLGQKYPVASNSTPQGRAENRRV 154
Cdd:PRK09040 164 -AGVPASSVFAAAFGSEQPVASNADDEGRAKNRRV 197
PRK10808 PRK10808
outer membrane protein A; Reviewed
 51-156 5.12e-10

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 56.62  E-value: 5.12e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 771165030  51 LSDTILFDKNDARLRPESETQIKSMASRLAETGLNHARMD--GHTDNYGEESYNNALSLKRANAVADAW-AKGanIPRSN 127
Cdd:PRK10808 222 LKSDVLFNFNKATLKPEGQQALDQLYSQLSNLDPKDGSVVvlGYTDRIGSDAYNQGLSEKRAQSVVDYLvSKG--IPADK 299

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 771165030 128 LTTQGLGQKYPVASNS--TPQGRAE-------NRRVAV 156
Cdd:PRK10808 300 ISARGMGKSNPVTGNTcdNVKPRAAlidclapDRRVEI 337
PRK09039 PRK09039
peptidoglycan -binding protein;
55-154 5.39e-10

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 56.51  E-value: 5.39e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 771165030  55 ILFDKNDARLRPESETQIKSMASRLAE------TGLNHA-RMDGHTDN---YGEESY--NNALSLKRANAVADAW-AKGa 121
Cdd:PRK09039 226 VLFPTGSAELNPEGQAEIAKLAAALIElakeipPEINWVlRVDGHTDNvplSGTGRFrdNWELSSARAISVVKFLiALG- 304

                         90       100       110
                 ....*....|....*....|....*....|...
gi 771165030 122 nIPRSNLTTQGLGQKYPVASNSTPQGRAENRRV 154
Cdd:PRK09039 305 -VPADRLAAAGFGEFQPLDPGDTPEARARNRRI 336
motB PRK08944
flagellar motor protein MotB; Reviewed
 62-159 6.39e-09

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 53.47  E-value: 6.39e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 771165030  62 ARLRPESETQIKSMASRLAET-GLnhARMDGHTDNYG--EESY--NNALSLKRANAVADAWAKGANIPRSNLTTQGLGQK 136
Cdd:PRK08944 188 AFLQPKFKPVVRKIGELLKDVpGI--ITVSGHTDNVPisSELYrsNWDLSSARAVAVAHELLKVKGFDPQRLKVVGMADT 265

                         90       100
                 ....*....|....*....|...
gi 771165030 137 YPVASNSTPQGRAENRRVAVVIS 159
Cdd:PRK08944 266 QPLVPNDTAENRARNRRVEIIIE 288
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 48-158 2.55e-08

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 51.22  E-value: 2.55e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 771165030  48 SLGLSDTILFDKNDARLRPESetqiKSMASRLA---ETGLNHARMDGHTDN---YGEESYNN-ALSLKRANAVADAWAKG 120
Cdd:PRK06742 110 SVVIVDNLIFDTGDANVKPEA----KEIISQLVgffQSVPNPIVVEGHTDSrpiHNDKFPSNwELSSARAANMIHHLIEV 185

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 771165030 121 ANIPRSNLTTQGLGQKYPVASNSTPQGRAENRRVAVVI 158
Cdd:PRK06742 186 YNVDDKRLAAVGYADTKPVVPNDSPQNWEKNRRVVIYI 223
motB PRK06667
flagellar motor protein MotB; Validated
 57-160 1.02e-07

flagellar motor protein MotB; Validated


Pssm-ID: 180652 [Multi-domain]  Cd Length: 252  Bit Score: 49.79  E-value: 1.02e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 771165030  57 FDKNDARLR-PESETQIKSMASRLAetGLNHA----RMDGHTDNY-----GEESYNNALSLKRANAVADAWAKGANIPRS 126
Cdd:PRK06667 129 FYPGSAEVKlEENRETLQKIASFIG--FLDLAgrnfRIEGHTDNVdvnpeGPWKSNWELSGARAVNMLEYILNYGDQSES 206

                         90       100       110
                 ....*....|....*....|....*....|....
gi 771165030 127 NLTTQGLGQKYPVASNSTPQGRAENRRVAVVIST 160
Cdd:PRK06667 207 WFQVSGFAGSRPLATEDTPEGRAYNRRIDIVILT 240
motB PRK08457
flagellar motor protein MotB; Reviewed
 48-160 7.27e-07

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 47.40  E-value: 7.27e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 771165030  48 SLGLSDTILFDKNDARL-RPESETQIKSMA---SRLAETGlnHARMDGHTDNY--GEESYNNA--LSLKRANAVADAWAK 119
Cdd:PRK08457 117 ALKLPSKLLFENGSAEIiNADMMDYLKRIAkiiTKLPKQV--KINVRGYTDNSplNKSRYKDHyeLAAARAYNVMKVLIQ 194

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 771165030 120 GaNIPRSNLTTQGLGQKYPVASNSTPQGRAENRRVAVVIST 160
Cdd:PRK08457 195 Y-GINPNRLSFSSYGSNNPIAPNDSLENRLKNNRVEIFFKV 234
PRK07034 PRK07034
hypothetical protein; Provisional
 91-157 1.65e-05

hypothetical protein; Provisional


Pssm-ID: 168775 [Multi-domain]  Cd Length: 536  Bit Score: 43.62  E-value: 1.65e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 771165030  91 GHTDN--YGEESYNNALSLK--RANAVADAWAKGANIPRSN---LTTQGLGQKYPVASNSTPQGRAENRRVAVV 157
Cdd:PRK07034 433 GHTDNkpFRSTSGNNNLKLSaaRASVVADKLRESTQINETHqreISAIGRGESDPLADNATEEGRKRNRRVDIL 506
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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