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Conserved domains on  [gi|780910685|gb|KJS78373|]
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MAG: NADH:ubiquinone oxidoreductase subunit H [Desulfotomaculum sp. BICA1-6]

Protein Classification

complex I subunit 1/NuoH family protein( domain architecture ID 10002943)

complex I subunit 1/NuoH family protein such as bacterial NADH-quinone oxidoreductase subunit H (NuoH) that is part of the connecting domain of complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

EC:  7.1.1.-
Gene Ontology:  GO:0048038|GO:0016655|GO:0016020
PubMed:  23417064|24059520|10940377
SCOP:  4005664

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 26-347 8.49e-136

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


:

Pssm-ID: 440629  Cd Length: 329  Bit Score: 389.49  E-value: 8.49e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685  26 IAEAIVLLGKLIAILIFILINGLFLpLYVERKVAAYMQARIGPNRVGPKGLLQPIADMVKMLGKEIVIPKKADIKVFLVA 105
Cdd:COG1005    5 LAPLLITLIKALVILVFLLLLAAYL-TWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 106 PVLIFVPTLMVFAVIPFGKDMVAIDMNIGLFYALAVASLSALFIWMGGWAANSKYSLIGAMRVVAQMVSYELPLALSLLG 185
Cdd:COG1005   84 PILAFIPALLAFAVIPFGPGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLG 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 186 VVMIVGSLKLSDIIAAQE-HVWFIFTQPIAFLIYFIAGVAETNRTPFCVVEGESEIIAGPYTEYGGMGFGMYGLSEFANI 264
Cdd:COG1005  164 VVLLAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANM 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 265 MLMCALATIMFLGGWHAPF---GLAFIPSWIWFLIKMYVLIFIVMQFRWTYLRLRVDQIMGFGWKVLIPLALANVFITGI 341
Cdd:COG1005  244 FLVSALATTLFLGGWLGPFpilPLGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVLTAA 323


                 ....*.
gi 780910685 342 GMYVYR 347
Cdd:COG1005  324 VVLLFG 329
 
Name Accession Description Interval E-value
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 26-347 8.49e-136

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 389.49  E-value: 8.49e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685  26 IAEAIVLLGKLIAILIFILINGLFLpLYVERKVAAYMQARIGPNRVGPKGLLQPIADMVKMLGKEIVIPKKADIKVFLVA 105
Cdd:COG1005    5 LAPLLITLIKALVILVFLLLLAAYL-TWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 106 PVLIFVPTLMVFAVIPFGKDMVAIDMNIGLFYALAVASLSALFIWMGGWAANSKYSLIGAMRVVAQMVSYELPLALSLLG 185
Cdd:COG1005   84 PILAFIPALLAFAVIPFGPGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLG 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 186 VVMIVGSLKLSDIIAAQE-HVWFIFTQPIAFLIYFIAGVAETNRTPFCVVEGESEIIAGPYTEYGGMGFGMYGLSEFANI 264
Cdd:COG1005  164 VVLLAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANM 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 265 MLMCALATIMFLGGWHAPF---GLAFIPSWIWFLIKMYVLIFIVMQFRWTYLRLRVDQIMGFGWKVLIPLALANVFITGI 341
Cdd:COG1005  244 FLVSALATTLFLGGWLGPFpilPLGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVLTAA 323


                 ....*.
gi 780910685 342 GMYVYR 347
Cdd:COG1005  324 VVLLFG 329
NADHdh pfam00146
NADH dehydrogenase;
53-340 2.47e-126

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 364.49  E-value: 2.47e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685   53 YVERKVAAYMQARIGPNRVGPKGLLQPIADMVKMLGKEIVIPKKADIKVFLVAPVLIFVPTLMVFAVIPFGKDMVAIDMN 132
Cdd:pfam00146  18 WAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVIPFGPGLVLADLN 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685  133 IGLFYALAVASLSALFIWMGGWAANSKYSLIGAMRVVAQMVSYELPLALSLLGVVMIVGSLKLSDIIAAQEHVWFIFTQP 212
Cdd:pfam00146  98 VGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEIVEAQAGGWFIPLQP 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685  213 IAFLIYFIAGVAETNRTPFCVVEGESEIIAGPYTEYGGMGFGMYGLSEFANIMLMCALATIMFLGGWHAPFGlafIPSWI 292
Cdd:pfam00146 178 LAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLGGWLGPFP---LPGLL 254

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 780910685  293 WFLIKMYVLIFIVMQFRWTYLRLRVDQIMGFGWKVLIPLALANVFITG 340
Cdd:pfam00146 255 WFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLTA 302
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
52-341 1.09e-119

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 348.34  E-value: 1.09e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685  52 LYVERKVAAYMQARIGPNRVGPKGLLQPIADMVKMLGKEIVIPKKADIKVFLVAPVLIFVPTLMVFAVIPFGKDMVAIDM 131
Cdd:PRK06076  31 IWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPAFLAWAVIPFGPELVIADL 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 132 NIGLFYALAVASLSALFIWMGGWAANSKYSLIGAMRVVAQMVSYELPLALSLLGVVMIVGSLKLSDIIAAQEHVWFIFTQ 211
Cdd:PRK06076 111 NVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLNLSDIVEAQFLSWNIIPQ 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 212 PIAFLIYFIAGVAETNRTPFCVVEGESEIIAGPYTEYGGMGFGMYGLSEFANIMLMCALATIMFLGGWHAPFGLA-FIPS 290
Cdd:PRK06076 191 PPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALITTLFLGGWLPPFPLGgGIPG 270

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 780910685 291 WIWFLIKMYVLIFIVMQFRWTYLRLRVDQIMGFGWKVLIPLALANVFITGI 341
Cdd:PRK06076 271 AIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLLTAA 321
 
Name Accession Description Interval E-value
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 26-347 8.49e-136

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 389.49  E-value: 8.49e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685  26 IAEAIVLLGKLIAILIFILINGLFLpLYVERKVAAYMQARIGPNRVGPKGLLQPIADMVKMLGKEIVIPKKADIKVFLVA 105
Cdd:COG1005    5 LAPLLITLIKALVILVFLLLLAAYL-TWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 106 PVLIFVPTLMVFAVIPFGKDMVAIDMNIGLFYALAVASLSALFIWMGGWAANSKYSLIGAMRVVAQMVSYELPLALSLLG 185
Cdd:COG1005   84 PILAFIPALLAFAVIPFGPGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLG 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 186 VVMIVGSLKLSDIIAAQE-HVWFIFTQPIAFLIYFIAGVAETNRTPFCVVEGESEIIAGPYTEYGGMGFGMYGLSEFANI 264
Cdd:COG1005  164 VVLLAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANM 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 265 MLMCALATIMFLGGWHAPF---GLAFIPSWIWFLIKMYVLIFIVMQFRWTYLRLRVDQIMGFGWKVLIPLALANVFITGI 341
Cdd:COG1005  244 FLVSALATTLFLGGWLGPFpilPLGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVLTAA 323


                 ....*.
gi 780910685 342 GMYVYR 347
Cdd:COG1005  324 VVLLFG 329
NADHdh pfam00146
NADH dehydrogenase;
53-340 2.47e-126

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 364.49  E-value: 2.47e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685   53 YVERKVAAYMQARIGPNRVGPKGLLQPIADMVKMLGKEIVIPKKADIKVFLVAPVLIFVPTLMVFAVIPFGKDMVAIDMN 132
Cdd:pfam00146  18 WAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVIPFGPGLVLADLN 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685  133 IGLFYALAVASLSALFIWMGGWAANSKYSLIGAMRVVAQMVSYELPLALSLLGVVMIVGSLKLSDIIAAQEHVWFIFTQP 212
Cdd:pfam00146  98 VGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEIVEAQAGGWFIPLQP 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685  213 IAFLIYFIAGVAETNRTPFCVVEGESEIIAGPYTEYGGMGFGMYGLSEFANIMLMCALATIMFLGGWHAPFGlafIPSWI 292
Cdd:pfam00146 178 LAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLGGWLGPFP---LPGLL 254

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 780910685  293 WFLIKMYVLIFIVMQFRWTYLRLRVDQIMGFGWKVLIPLALANVFITG 340
Cdd:pfam00146 255 WFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLTA 302
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
52-341 1.09e-119

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 348.34  E-value: 1.09e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685  52 LYVERKVAAYMQARIGPNRVGPKGLLQPIADMVKMLGKEIVIPKKADIKVFLVAPVLIFVPTLMVFAVIPFGKDMVAIDM 131
Cdd:PRK06076  31 IWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPAFLAWAVIPFGPELVIADL 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 132 NIGLFYALAVASLSALFIWMGGWAANSKYSLIGAMRVVAQMVSYELPLALSLLGVVMIVGSLKLSDIIAAQEHVWFIFTQ 211
Cdd:PRK06076 111 NVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLNLSDIVEAQFLSWNIIPQ 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 212 PIAFLIYFIAGVAETNRTPFCVVEGESEIIAGPYTEYGGMGFGMYGLSEFANIMLMCALATIMFLGGWHAPFGLA-FIPS 290
Cdd:PRK06076 191 PPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALITTLFLGGWLPPFPLGgGIPG 270

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 780910685 291 WIWFLIKMYVLIFIVMQFRWTYLRLRVDQIMGFGWKVLIPLALANVFITGI 341
Cdd:PRK06076 271 AIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLLTAA 321
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 55-341 7.86e-75

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 233.85  E-value: 7.86e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685  55 ERKVAAYMQARIGPNRVGPKGLLQPIADMVKMLGKEIVIPKKADIKVFLVAPVLIFVPTLMVFAVIPFGKDMVAIDMNIG 134
Cdd:MTH00054  26 ERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAFIAWGVIPYGEGVVLSDLGIG 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 135 LFYALAVASLSALFIWMGGWAANSKYSLIGAMRVVAQMVSYELPLALSLLGVVMIVGSLKLSDIIAAQEHVWFIFTQPIA 214
Cdd:MTH00054 106 ILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLNLTEIVLAQKNIWFIFPLFPA 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 215 FLIYFIAGVAETNRTPFCVVEGESEIIAGPYTEYGGMGFGMYGLSEFANIMLMCALATIMFLGGWHAPFG-LAFIPSWIW 293
Cdd:MTH00054 186 AIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVILFLGGWLVISGpTSYFSNFVW 265

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 780910685 294 FLIKMYVLIFIVMQFRWTYLRLRVDQIMGFGWKVLIPLALANV-FITGI 341
Cdd:MTH00054 266 FGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVvLVSGI 314
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 49-334 1.44e-71

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 225.27  E-value: 1.44e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685  49 FLPLyVERKVAAYMQARIGPNRVGPKGLLQPIADMVKMLGKEIVIPKKADIKVFLVAPVLIFVPTLMVFAVIPFGKDMva 128
Cdd:MTH00104  19 FLTL-VERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLALTMWIPLPMPYPL-- 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 129 IDMNIGLFYALAVASLSALFIWMGGWAANSKYSLIGAMRVVAQMVSYELPLALSLLGVVMIVGSLKLSDIIAAQEHVWFI 208
Cdd:MTH00104  96 INMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLITTQEHLWLI 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 209 F-TQPIAfLIYFIAGVAETNRTPFCVVEGESEIIAGPYTEYGGMGFGMYGLSEFANIMLMCALATIMFLGGWHAPfglaF 287
Cdd:MTH00104 176 FpSWPLA-MMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTILFLGAFHNP----Y 250

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 780910685 288 IPSW--IWFLIKMYVLIFIVMQFRWTYLRLRVDQIMGFGWKVLIPLALA 334
Cdd:MTH00104 251 MPELytTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLA 299
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 55-339 5.59e-71

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 224.23  E-value: 5.59e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685  55 ERKVAAYMQARIGPNRVGPKGLLQPIADMVKMLGKEIVIPKKADIKVFLVAPVLIFVPTLMVFAVIPFGKDMVAIDMNIG 134
Cdd:MTH00216  30 ERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTLALIVWGVIPYERGVLISDFKIG 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 135 LFYALAVASLSALFIWMGGWAANSKYSLIGAMRVVAQMVSYELPLALSLLGVVMIVGSLKLSDIIAAQEH-VWFIFTQPI 213
Cdd:MTH00216 110 ILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGSLSITEIVLAQNNgIWFFFPLFP 189

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 214 AFLIYFIAGVAETNRTPFCVVEGESEIIAGPYTEYGGMGFGMYGLSEFANIMLMCALATIMFLGGWHAPFGLAFIPSWiW 293
Cdd:MTH00216 190 VAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLTTILFLGGWLSPIKYFKGGAG-W 268

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 780910685 294 FLIKMYVLIFIVMQFRWTYLRLRVDQIMGFGWKVLIPLALANVFIT 339
Cdd:MTH00216 269 FGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFV 314
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 49-334 1.49e-68

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 217.92  E-value: 1.49e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685  49 FLPLyVERKVAAYMQARIGPNRVGPKGLLQPIADMVKMLGKEIVIPKKADIKVFLVAPVLIFVPTLMVFAVIPFGKDmvA 128
Cdd:MTH00040  23 FLTL-VERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLFLALLLWSLIPVPTP--T 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 129 IDMNIGLFYALAVASLSALFIWMGGWAANSKYSLIGAMRVVAQMVSYELPLALSLLGVVMIVGSLKLSDIIAAQEHVWFI 208
Cdd:MTH00040 100 LNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSFSLSSISNSQNGSWLL 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 209 FTQPIAFLIYFIAGVAETNRTPFCVVEGESEIIAGPYTEYGGMGFGMYGLSEFANIMLMCALATIMFLGGwHAPFGLAFI 288
Cdd:MTH00040 180 FPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSVILFLGG-GSPFNEIFP 258

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 780910685 289 PSWIWFLIKMYVLIFIVMQFRWTYLRLRVDQIMGFGWKVLIPLALA 334
Cdd:MTH00040 259 INIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIG 304
ndhA CHL00032
NADH dehydrogenase subunit 1
 47-339 4.37e-68

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 217.90  E-value: 4.37e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685  47 GLFLPLYVERKVAAYMQARIGPNRVGPKGLLQPIADMVKMLGKEIVIPKKADIKVFLVAPVLIFVPTLMVFAVIPFGKDM 126
Cdd:CHL00032  43 GVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISILLSYLVIPFGYHL 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 127 VAIDMNIGLFYALAVASLSALFIWMGGWAANSKYSLIGAMRVVAQMVSYELPLALSLLGVVMIVGSLKLSDIIAAQEHV- 205
Cdd:CHL00032 123 VLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSLSTVDIVEAQSKYg 202

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 206 ---WFIFTQPIAFLIYFIAGVAETNRTPFCVVEGESEIIAGPYTEYGGMGFGMYGLSEFANIMLMCALATIMFLGGWHAP 282
Cdd:CHL00032 203 fwgWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNLS 282

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 780910685 283 FGLAFIPSW----------------IWFLIKMYVLIFIVMQFRWTYLRLRVDQIMGFGWKVLIPLALANVFIT 339
Cdd:CHL00032 283 IPYIFIPELfeinktggvfgttigiFITLAKTYLFLFISITTRWTLPRLRMDQLLNLGWKFLLPISLGNLLLT 355
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 49-334 1.63e-67

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 215.14  E-value: 1.63e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685  49 FLPLyVERKVAAYMQARIGPNRVGPKGLLQPIADMVKMLGKEIVIPKKADIKVFLVAPVLIFVPTLMVFAVIPFGKDMva 128
Cdd:MTH00111  24 FLTL-LERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILALLLALTIWTPLPMPFPL-- 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 129 IDMNIGLFYALAVASLSALFIWMGGWAANSKYSLIGAMRVVAQMVSYELPLALSLLGVVMIVGSLKLSDIIAAQEHVWFI 208
Cdd:MTH00111 101 ADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSGGYTLQTLATTQEPLWLI 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 209 FTQ-PIAfLIYFIAGVAETNRTPFCVVEGESEIIAGPYTEYGGMGFGMYGLSEFANIMLMCALATIMFLGgwhaPFGLAF 287
Cdd:MTH00111 181 FSSwPLA-MMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLTTILFLN----PSTLNL 255

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 780910685 288 IPSWIWFLIKMYVLIfIVMQFRW---TYLRLRVDQIMGFGWKVLIPLALA 334
Cdd:MTH00111 256 PPELFTINLMTKTLL-LTSGFLWiraSYPRFRYDQLMHLLWKQFLPLTLA 304
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 49-336 2.84e-66

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 211.77  E-value: 2.84e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685  49 FLPLyVERKVAAYMQARIGPNRVGPKGLLQPIADMVKMLGKEIVIPKKADIKVFLVAPVLIFVPTLMVFAVIPFGKDMva 128
Cdd:MTH00134  25 FLTL-LERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALTLALTLWAPMPMPYPV-- 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 129 IDMNIGLFYALAVASLSALFIWMGGWAANSKYSLIGAMRVVAQMVSYELPLALSLLGVVMIVGSLKLSDIIAAQEHVWFI 208
Cdd:MTH00134 102 TDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTLQTFNTAQESIWLL 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 209 F-TQPIAFLiYFIAGVAETNRTPFCVVEGESEIIAGPYTEYGGMGFGMYGLSEFANIMLMCALATIMFLGGWHAPfglaF 287
Cdd:MTH00134 182 LpAWPLAAM-WYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFLGASHIP----T 256

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 780910685 288 IP--SWIWFLIKMYVLIFIVMQFRWTYLRLRVDQIMGFGWKVLIPLALANV 336
Cdd:MTH00134 257 LPelTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALV 307
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 49-334 5.34e-66

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 211.02  E-value: 5.34e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685  49 FLPLyVERKVAAYMQARIGPNRVGPKGLLQPIADMVKMLGKEIVIPKKADIKVFLVAPVLIFVPTLMVFAVIPFGKDMVa 128
Cdd:MTH00071  24 FLTL-VERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMALTLALIIWTPLPMPNNLS- 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 129 iDMNIGLFYALAVASLSALFIWMGGWAANSKYSLIGAMRVVAQMVSYELPLALSLLGVVMIVGSLKLSDIIAAQEHVWFI 208
Cdd:MTH00071 102 -NLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGGFSLMNFNTTQEFMWLI 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 209 F-TQPIAFLiYFIAGVAETNRTPFCVVEGESEIIAGPYTEYGGMGFGMYGLSEFANIMLMCALATIMFLGGwhAPFGLAF 287
Cdd:MTH00071 181 IpAWPMAAM-WFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLSTILFLGS--TYNHLQP 257

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 780910685 288 IPSWIWFLIKMYVLIFIVMQFRWTYLRLRVDQIMGFGWKVLIPLALA 334
Cdd:MTH00071 258 ELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLA 304
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 55-346 1.21e-65

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 209.63  E-value: 1.21e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685  55 ERKVAAYMQARIGPNRVGPKGLLQPIADMVKMLGKEIVIPKKADIKVFLVAPVLIFVPTLMVFAVIPFGKDMvaIDMNIG 134
Cdd:MTH00193  26 ERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIYPYLFNL--ISFNLG 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 135 LFYALAVASLSALFIWMGGWAANSKYSLIGAMRVVAQMVSYELPLALSLLGVVMIVGSLKLSDIIAAQEHVWFIFTQPIA 214
Cdd:MTH00193 104 ILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNLLDFMNYQKYIWFIFFSFPL 183

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 215 FLIYFIAGVAETNRTPFCVVEGESEIIAGPYTEYGGMGFGMYGLSEFANIMLMCALATIMFLGGWhapfglafiPSWIWF 294
Cdd:MTH00193 184 FLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVLMFLGGD---------LLSLLF 254

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 780910685 295 LIKMYVLIFIVMQFRWTYLRLRVDQIMGFGWKVLIPLALaNVFITGIGMYVY 346
Cdd:MTH00193 255 YLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSL-NYLLFFFGLKIF 305
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 55-340 4.33e-64

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 207.18  E-value: 4.33e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685  55 ERKVAAYMQARIGPNRVGPKGLLQPIADMVKMLGKEIVIPKKADIKVFLVAPVLIFVPTLMVFAVIPFGKDMVAIDMNIG 134
Cdd:MTH00029  31 ERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAILAWAIVTMDQGVFLSDLDVG 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 135 LFYALAVASLSALFIWMGGWAANSKYSLIGAMRVVAQMVSYELPLALSLLGVVMIVGSLKLSDIIAAQEHVWFIFTQPIA 214
Cdd:MTH00029 111 VLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLNISEIVISQRSVWLIIPLFPA 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 215 FLIYFIAGVAETNRTPFCVVEGESEIIAGPYTEYGGMGFGMYGLSEFANIMLMCALATIMFLGGWHAPF----------- 283
Cdd:MTH00029 191 AIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIFFLGGWLSPLdgiptppeafs 270

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 284 ---GLAFIPSWIWFLIKMYVLIFIVMQFRWTYLRLRVDQIMGFGWKVLIPLALANVFITG 340
Cdd:MTH00029 271 ifeQIASSKSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSLGLVILTA 330
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 49-334 5.14e-64

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 205.53  E-value: 5.14e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685  49 FLPLyVERKVAAYMQARIGPNRVGPKGLLQPIADMVKMLGKEIVIPKKADIKVFLVAPVLIFVPTLMVFAVIPFgkDMVA 128
Cdd:MTH00218  21 FLTL-LERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLALLLWMPLPL--PFSL 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 129 IDMNIGLFYALAVASLSALFIWMGGWAANSKYSLIGAMRVVAQMVSYELPLALSLLGVVMIVGSLKLSDIIAAQEHVWFI 208
Cdd:MTH00218  98 INLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFSLEGFNLTQETIWLL 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 209 FTQPIAFLIYFIAGVAETNRTPFCVVEGESEIIAGPYTEYGGMGFGMYGLSEFANIMLMCALATIMFLGGWHapfglafi 288
Cdd:MTH00218 178 IPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSVILFLGTSL-------- 249

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 780910685 289 pSWIWFLIKMYVLIFIVMQFRWTYLRLRVDQIMGFGWKVLIPLALA 334
Cdd:MTH00218 250 -TTINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLA 294
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 55-334 3.77e-61

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 198.17  E-value: 3.77e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685  55 ERKVAAYMQARIGPNRVGPKGLLQPIADMVKMLGKEIVIPKKADIKVFLVAPVLIFVPTLMVFAVIPfgKDMVAIDMNIG 134
Cdd:MTH00143  25 ERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYP--SYFSSSYFGWG 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 135 LFYALAVASLSALFIWMGGWAANSKYSLIGAMRVVAQMVSYELPLALSLLGVVMIVGSLKLSDIIAAQEHVWFIFTQPIA 214
Cdd:MTH00143 103 LLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEISESQFSVWLGFLMFPV 182

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 215 FLIYFIAGVAETNRTPFCVVEGESEIIAGPYTEYGGMGFGMYGLSEFANIMLMCALATIMFLGGWhapfGLAFIPSWIWF 294
Cdd:MTH00143 183 FLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLFFGGS----SVLFLLGGVVF 258

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 780910685 295 LIKMYVLIFIVMQFRWTYLRLRVDQIMGFGWKVLIPLALA 334
Cdd:MTH00143 259 MFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLS 298
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 55-333 2.29e-58

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 191.11  E-value: 2.29e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685  55 ERKVAAYMQARIGPNRVGPKGLLQPIADMVKMLGKEIVIPKKADIKVFLVAPVLIFVPTLMVFAVIPFGKDMVAIdmNIG 134
Cdd:MTH00195  26 ERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALALILWVPIPSPFGFSSI--NLS 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 135 LFYALAVASLSALFIWMGGWAANSKYSLIGAMRVVAQMVSYELPLALSLLGVVMIVGSLKLSDIIAAQEHVWFIFTQPIA 214
Cdd:MTH00195 104 VLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDFTIMVISQGFSWVILLCPPI 183

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 215 FLIYFIAGVAETNRTPFCVVEGESEIIAGPYTEYGGMGFGMYGLSEFANIMLMCALATIMFLGGWHAPFglafipswiwF 294
Cdd:MTH00195 184 SFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILFLGGGGTII----------V 253

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 780910685 295 LIKMYVLIFIVMQFRWTYLRLRVDQIMGFGWKVLIPLAL 333
Cdd:MTH00195 254 ALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLIL 292
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 54-339 5.05e-58

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 189.86  E-value: 5.05e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685  54 VERKVAAYMQARIGPNRVGPKGLLQPIADMVKMLGKEIVIPKKADIKVFLVAPVLIFVPTLMVFAVIPFGkdMVAIDMNI 133
Cdd:MTH00225  24 LERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSLILWSLYPSM--FSIYSFKF 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 134 GLFYALAVASLSALFIWMGGWAANSKYSLIGAMRVVAQMVSYELPLALSLLGVVMIVGSLKLSDIIAAQEHVWFIFTQPI 213
Cdd:MTH00225 102 GILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNLFDFSYNQKYFWFMFVLFP 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 214 AFLIYFIAGVAETNRTPFCVVEGESEIIAGPYTEYGGMGFGMYGLSEFANIMLMCALATIMFLGGwhapfglAFIPSWIW 293
Cdd:MTH00225 182 LFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSILFFGG-------FFVTIDLF 254

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 780910685 294 FLIKMYVLIFIVMQFRWTYLRLRVDQIMGFGWKVLIPLALANVFIT 339
Cdd:MTH00225 255 LILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMV 300
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 54-338 3.24e-53

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 177.67  E-value: 3.24e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685  54 VERKVAAYMQARIGPNRVGPKGLLQPIADMVKMLGKEIVIPKKADIKVFLVAPVLIFVPTLMVFAVIPFGKDMVAIDMNI 133
Cdd:MTH00010  26 LERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILALLLWSLYPHKHPSFFLKFSI 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 134 GLFyaLAVASLSALFIWMGGWAANSKYSLIGAMRVVAQMVSYELPLALSLLGVVMIVGSLKLSDIIAAQEHVWFIFTQPI 213
Cdd:MTH00010 106 LLF--LCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSFSKIIMSQYSWILLMIIPL 183

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 214 AFlIYFIAGVAETNRTPFCVVEGESEIIAGPYTEYGGMGFGMYGLSEFANIMLMCALATIMFLggwhaPFGLAFIPSWIW 293
Cdd:MTH00010 184 TV-SWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVFFT-----SFIPSIFISDLM 257

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 780910685 294 FLIKMYVLIFIVMQFRWTYLRLRVDQIMGFGWKVLIPLALANVFI 338
Cdd:MTH00010 258 LILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMI 302
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 49-333 3.40e-34

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 126.94  E-value: 3.40e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685  49 FLPLYvERKVAAYMQARIGPNRVGPKGLLQPIADMVKMLGKEIVIPKKADIKVFLVAPVLIFVPTLMVFAVIPFGKDMVA 128
Cdd:MTH00090  15 FITLY-ERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEWFVLPYFFDFLS 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 129 IDMNigLFYALAVASLSALFIWMGGWAANSKYSLIGAMRVVAQMVSYELPLALSLLGVVMIVGSLKLSDIiaaqehvwFI 208
Cdd:MTH00090  94 FEYS--LLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVSS--------FS 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 209 FTQPIAFLIYFIAGVAETNRTPFCVVEGESEIIAGPYTEYGGMGFGMYGLSEFANIMLMCALATIMFlggwhapfglaFI 288
Cdd:MTH00090 164 LSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLF-----------FK 232

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 780910685 289 PSWIWFLIKMYVLIFIvmqfRWTYLRLRVDQIMGFGWKVLIPLAL 333
Cdd:MTH00090 233 FSFLMLFLIFSLLIFI----RSSYPRFRYDMMMSMFWFKFLPLSL 273
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
54-338 5.81e-33

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 124.14  E-value: 5.81e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685  54 VERKVAAYMQARIGPnrvgpkGLLQPIADMVKMLGKEIVIPKKAdIKVFLVAPVLIFVPTLMVFAVIPFGKDMVAIDMN- 132
Cdd:COG0650   24 IIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETA-SWLFRAAPYVALAAMLLAALLVPVLTTGPPLSFSg 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 133 --IGLFYALAVASlsaLFIWMGGWAANSKYSLIGAMRVVAQMVSYELPLALSLLGVVMIVGSLKLSDIIAAQEH---VWF 207
Cdd:COG0650   97 dlIVLVYLLALAR---FFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLAGSTSLSDIVAYQAAhgpLLL 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 208 IFTQPIAFLIYFIAGVAETNRTPFCVVEGESEIIAGPYTEYGGMGFGMYGLSEFANIMLMCALATIMFLggwhaPFGLA- 286
Cdd:COG0650  174 SPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVLLSLFVNLFL-----PWGIAl 248

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 780910685 287 -FIPSWIWFLIKMYVLIFIVMQFRWTYLRLRVDQIMGFGWKVLIPLALANVFI 338
Cdd:COG0650  249 tLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLA 301
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 55-338 7.38e-28

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 110.40  E-value: 7.38e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685  55 ERKVAAYMQARIGPNRVGPKGLLQPIADMVKMLGKEIVIPKKADIKVFLVAPVLIFVptLMVFAVIPFGKDMVAIDMNIG 134
Cdd:MTH00058  25 ERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVL--LVVFYCFIYGSYYSGSYSSLS 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 135 LFYALAVASLSALFIWMGGWAANSKYSLIGAMRVVAQMVSYELPLALSLLGVVMIVGSLKLSDIIAAQEHVWFIFtqPIA 214
Cdd:MTH00058 103 LLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYSGWLSVLLF--PLI 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780910685 215 FLIYFIAGVAETNRTPFCVVEGESEIIAGPYTeyggmgfgmyglsEFANIMLMCALA---TIMFLGGWHApFGLAFIPSW 291
Cdd:MTH00058 181 YILWLVCILCETNRTPFDYGESESELVSGFNT-------------EYSGIYFTCLFAceyLIIFIFSWLG-SVLFFGGGF 246

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 780910685 292 IWFLIKMYVLIFIVMqfRWTYLRLRVDQIMGFGWKVLIPLALANVFI 338
Cdd:MTH00058 247 VSIMLLFHLLFFMWA--RATLPRVRYDYFVNFFWEYCLVLLILSLFV 291
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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