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Conserved domains on  [gi|794280926|gb|KJX37664|]
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pilus assembly protein HofP [Enterobacter chengduensis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HofP super family cl11342
DNA utilization proteins HofP; This family includes the Escherischia coli protein HofP, one of ...
 4-134 1.33e-35

DNA utilization proteins HofP; This family includes the Escherischia coli protein HofP, one of eight genes shown to be required for the utilization of extracellular DNA as a nutrient source in starving conditions, allowing DNA to be the sole source for carbon and energy. Proteins in this entry appear are found only in Enterobacteriaceae.


The actual alignment was detected with superfamily member pfam10748:

Pssm-ID: 402399  Cd Length: 132  Bit Score: 119.31  E-value: 1.33e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 794280926    4 STRYLLVCSALL-LTGMRDPFRPPDDPCALGELAQWHYRGMV-RGQQATGILQDGQKRWYRLKTHERFPAGWTITDINET 81
Cdd:pfam10748   1 VKRWLLACICLLmLTGMRDPFKPPEDRCRIAELSQWRYQGMVgRGERITGILKDSQQKWRRVEQNQVLENGWTILRLTAD 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 794280926   82 ELVVDVGEACKPGIWTWQREGtKKNESTDNAVATGVQPSAVGRRAKTDHAGGG 134
Cdd:pfam10748  81 VLTLGTGKNCEPPQWRWQRQG-DTNEAMDSRTTDDADARRTGGKSAKSDADGG 132
 
Name Accession Description Interval E-value
HofP pfam10748
DNA utilization proteins HofP; This family includes the Escherischia coli protein HofP, one of ...
 4-134 1.33e-35

DNA utilization proteins HofP; This family includes the Escherischia coli protein HofP, one of eight genes shown to be required for the utilization of extracellular DNA as a nutrient source in starving conditions, allowing DNA to be the sole source for carbon and energy. Proteins in this entry appear are found only in Enterobacteriaceae.


Pssm-ID: 402399  Cd Length: 132  Bit Score: 119.31  E-value: 1.33e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 794280926    4 STRYLLVCSALL-LTGMRDPFRPPDDPCALGELAQWHYRGMV-RGQQATGILQDGQKRWYRLKTHERFPAGWTITDINET 81
Cdd:pfam10748   1 VKRWLLACICLLmLTGMRDPFKPPEDRCRIAELSQWRYQGMVgRGERITGILKDSQQKWRRVEQNQVLENGWTILRLTAD 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 794280926   82 ELVVDVGEACKPGIWTWQREGtKKNESTDNAVATGVQPSAVGRRAKTDHAGGG 134
Cdd:pfam10748  81 VLTLGTGKNCEPPQWRWQRQG-DTNEAMDSRTTDDADARRTGGKSAKSDADGG 132
 
Name Accession Description Interval E-value
HofP pfam10748
DNA utilization proteins HofP; This family includes the Escherischia coli protein HofP, one of ...
 4-134 1.33e-35

DNA utilization proteins HofP; This family includes the Escherischia coli protein HofP, one of eight genes shown to be required for the utilization of extracellular DNA as a nutrient source in starving conditions, allowing DNA to be the sole source for carbon and energy. Proteins in this entry appear are found only in Enterobacteriaceae.


Pssm-ID: 402399  Cd Length: 132  Bit Score: 119.31  E-value: 1.33e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 794280926    4 STRYLLVCSALL-LTGMRDPFRPPDDPCALGELAQWHYRGMV-RGQQATGILQDGQKRWYRLKTHERFPAGWTITDINET 81
Cdd:pfam10748   1 VKRWLLACICLLmLTGMRDPFKPPEDRCRIAELSQWRYQGMVgRGERITGILKDSQQKWRRVEQNQVLENGWTILRLTAD 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 794280926   82 ELVVDVGEACKPGIWTWQREGtKKNESTDNAVATGVQPSAVGRRAKTDHAGGG 134
Cdd:pfam10748  81 VLTLGTGKNCEPPQWRWQRQG-DTNEAMDSRTTDDADARRTGGKSAKSDADGG 132
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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