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Conserved domains on  [gi|808273185|gb|KKE18517|]
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Restriction inhibitor protein ral [Salmonella enterica subsp. enterica serovar Typhimurium]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ral super family cl12621
Antirestriction protein Ral; Ral alleviates restriction and enhances modification by the E. ...
 1-61 4.84e-36

Antirestriction protein Ral; Ral alleviates restriction and enhances modification by the E.Coli restriction and modification system.


The actual alignment was detected with superfamily member pfam11058:

Pssm-ID: 287970  Cd Length: 66  Bit Score: 115.27  E-value: 4.84e-36
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 808273185   1 MTTTIDTNQWCSRFVKCKGCKLDAECMVKPEEMALVREDGKIVDKWAIRTTEMIARELEKL 61
Cdd:pfam11058  1 MTTTIDKNQWCGQFKKCKGCKLDAECMVKPEEMALVMEDGKIVDKWAIRTTAMIARELEKL 61
 
Name Accession Description Interval E-value
Ral pfam11058
Antirestriction protein Ral; Ral alleviates restriction and enhances modification by the E. ...
 1-61 4.84e-36

Antirestriction protein Ral; Ral alleviates restriction and enhances modification by the E.Coli restriction and modification system.


Pssm-ID: 287970  Cd Length: 66  Bit Score: 115.27  E-value: 4.84e-36
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 808273185   1 MTTTIDTNQWCSRFVKCKGCKLDAECMVKPEEMALVREDGKIVDKWAIRTTEMIARELEKL 61
Cdd:pfam11058  1 MTTTIDKNQWCGQFKKCKGCKLDAECMVKPEEMALVMEDGKIVDKWAIRTTAMIARELEKL 61
 
Name Accession Description Interval E-value
Ral pfam11058
Antirestriction protein Ral; Ral alleviates restriction and enhances modification by the E. ...
 1-61 4.84e-36

Antirestriction protein Ral; Ral alleviates restriction and enhances modification by the E.Coli restriction and modification system.


Pssm-ID: 287970  Cd Length: 66  Bit Score: 115.27  E-value: 4.84e-36
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 808273185   1 MTTTIDTNQWCSRFVKCKGCKLDAECMVKPEEMALVREDGKIVDKWAIRTTEMIARELEKL 61
Cdd:pfam11058  1 MTTTIDKNQWCGQFKKCKGCKLDAECMVKPEEMALVMEDGKIVDKWAIRTTAMIARELEKL 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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