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Conserved domains on  [gi|808273189|gb|KKE18521|]
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antibiotic ABC transporter permease [Salmonella enterica subsp. enterica serovar Typhimurium]

Protein Classification

Phage_Arf domain-containing protein( domain architecture ID 13880697)

Phage_Arf domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_Arf pfam17585
Accessory recombination function protein; Family members are found in Caudovirales such as ...
 1-47 2.97e-20

Accessory recombination function protein; Family members are found in Caudovirales such as Salmonella virus P22. Family members have a recombination accessory function.


:

Pssm-ID: 340300  Cd Length: 47  Bit Score: 73.92  E-value: 2.97e-20
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 808273189   1 MQHEFSDEEFIALISPEIEEEVEQQINLAAERQNPIIGWDEFAGYYS 47
Cdd:pfam17585  1 MLHDFNDEEFIALISPEIEEEVEQQINLAAERNNPIIGWAEFAGDFS 47
 
Name Accession Description Interval E-value
Phage_Arf pfam17585
Accessory recombination function protein; Family members are found in Caudovirales such as ...
 1-47 2.97e-20

Accessory recombination function protein; Family members are found in Caudovirales such as Salmonella virus P22. Family members have a recombination accessory function.


Pssm-ID: 340300  Cd Length: 47  Bit Score: 73.92  E-value: 2.97e-20
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 808273189   1 MQHEFSDEEFIALISPEIEEEVEQQINLAAERQNPIIGWDEFAGYYS 47
Cdd:pfam17585  1 MLHDFNDEEFIALISPEIEEEVEQQINLAAERNNPIIGWAEFAGDFS 47
 
Name Accession Description Interval E-value
Phage_Arf pfam17585
Accessory recombination function protein; Family members are found in Caudovirales such as ...
 1-47 2.97e-20

Accessory recombination function protein; Family members are found in Caudovirales such as Salmonella virus P22. Family members have a recombination accessory function.


Pssm-ID: 340300  Cd Length: 47  Bit Score: 73.92  E-value: 2.97e-20
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 808273189   1 MQHEFSDEEFIALISPEIEEEVEQQINLAAERQNPIIGWDEFAGYYS 47
Cdd:pfam17585  1 MLHDFNDEEFIALISPEIEEEVEQQINLAAERNNPIIGWAEFAGDFS 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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