|
Name |
Accession |
Description |
Interval |
E-value |
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
1-422 |
1.28e-150 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 434.54 E-value: 1.28e-150
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 1 MAKYRFWAIIMIALAIVAGFFIWNsqkpDASRKFKLGLDLSGGTHLVYKADTSEIQSGDISG-------AMQSLRDTIER 73
Cdd:COG0342 2 KAKFLLWRLLLLLLVVALSLVAPN----GPAKPIKLGLDLQGGVHLLLEVDTDAALDEDGDGirevteeALDQAIEILRN 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 74 RVNLFGVSEPIVQIeeggvlggQREQRLIVELPGITDVNEAIKRIGETPTLEFKIL--SKEGQDKIKLEGETLDKASVSS 151
Cdd:COG0342 78 RVNELGVSEPVIQR--------QGDDRIVVELPGVQDPAEAKELLGKTAKLEFRLVddSADAQAAVPAGSELLPCRDGQP 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 152 MFL--ETGLTGRMLQKASIQFDQNFaNKPIIGLKFNEEGADLFAKITRENTGDVLGIFLDGTLVEAPYIREEITGGEAVI 229
Cdd:COG0342 150 YLLlgPVVLTGDDLTDASAGFDQQT-GQPVVSFTLDSEGAKKFADATRENVGKPLAIVLDGEVISAPVIQEPITGGSAQI 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 230 TGDFTPEMAKQVVRDLNYGALPMPISLLSTETIGATLGDRAVDASVKAGLYAFVVVALFLIAWYKFQGFVAVLALTIYTI 309
Cdd:COG0342 229 TGSFTVEEAQDLALLLRAGALPAPLEIVEERTVGPTLGADSIEKGLIAGLIGLLLVALFMLLYYRLPGLVANIALALNVV 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 310 INLVLFKLIPVTLTAAGIAGFILSIGMAVDANILIFERTKEELKRGKNKYEALKEGFRRAWSSIRDSNLSSIITAVILYY 389
Cdd:COG0342 309 LLLGVLSLLGATLTLPGIAGIILTIGMAVDANVLIFERIREELRAGRSLRAAIEAGFKRAFSTILDANVTTLIAAVVLFV 388
|
410 420 430
....*....|....*....|....*....|...
gi 818398924 390 FASTPViKGFALVFLIGVLVSMFSAVTASRTIL 422
Cdd:COG0342 389 LGTGPV-KGFAVTLILGILISMFTAVPVTRPLL 420
|
|
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
7-422 |
3.77e-135 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 396.52 E-value: 3.77e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 7 WAIIMIALAIVAGFFI--------WNSQKPDASRKF-----KLGLDLSGGTHLVYKADTSEIQSGDISGAMQSLRD---- 69
Cdd:PRK05812 1 WKYLLILLVLLIGLLYalpnlrgaLAPATPEWLPALgakpmKLGLDLRGGVHFLLEVDMDDALKKRLESLADDLRSllre 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 70 -------------------------------------------------TIERRVNLFGVSEPIVQIeeggvlggQREQR 100
Cdd:PRK05812 81 kkiryggveitfrdaedrdkaiallrklsslteaelkeiteealeqaieIIRNRVNELGVAEPVIQR--------QGADR 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 101 LIVELPGITDVNEAIKRIGETPTLEFKILskegqdkiklegetldkasvssmflETGLTGRMLQKASIQFDQNfaNKPII 180
Cdd:PRK05812 153 IVVELPGVQDTARAKEILGKTATLEFRLV-------------------------PVILTGDDITDASASFDQQ--GQPVV 205
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 181 GLKFNEEGADLFAKITRENTGDVLGIFLDGTLVEAPYIREEITGGEAVITGDFTPEMAKQVVRDLNYGALPMPISLLSTE 260
Cdd:PRK05812 206 NITLDSEGAKKFADITKANIGKRMAIVLDGEVISAPVIQSAITGGSAQITGNFTAEEARDLALLLRAGALPAPLEIVEER 285
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 261 TIGATLGDRAVDASVKAGLYAFVVVALFLIAWYKFQGFVAVLALTIYTIINLVLFKLIPVTLTAAGIAGFILSIGMAVDA 340
Cdd:PRK05812 286 TIGPSLGADSIRAGLIAGLIGLALVLLFMILYYRLFGLIANIALVANLVLILAVLSLLGATLTLPGIAGIVLTIGMAVDA 365
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 341 NILIFERTKEELKRGKNKYEALKEGFRRAWSSIRDSNLSSIITAVILYYFASTPViKGFALVFLIGVLVSMFSAVTASRT 420
Cdd:PRK05812 366 NVLIFERIREELREGRSLRSAIEAGFKRAFSTILDSNITTLIAAIILYALGTGPV-KGFAVTLGIGILTSMFTAITVTRA 444
|
..
gi 818398924 421 IL 422
Cdd:PRK05812 445 LV 446
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
1-433 |
1.59e-121 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 371.10 E-value: 1.59e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 1 MAKYRFWAIIMIALAIVAGFFIWNSqkpDASRKFKLGLDLSGGTHLVYKADTSEIQSGDISGAMQSLRDTIERRVNLFGV 80
Cdd:PRK13024 1 MRNKRWVIFFLTLLLLIGIYYASPK---FVTKNINLGLDLQGGFEVLLEVSPADKGKKADREALDSTVEVLRNRIDGLGV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 81 SEPIVQIEEGGvlggqreqRLIVELPGITDVNEAIKRIGETPTLEFKILSKEGQDKIKLEGETLDKASVSSMFLETGLTG 160
Cdd:PRK13024 78 SEPNIQREGNN--------RIRVELPGVQDPERARELLGSTAKLTFRDVTDPPPPGVGGPVVGPDEGKDTAVLNPVLLSG 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 161 RMLQKASIQFDQNFANKPIIGLKFNEEGADLFAKITREN-----TGDVLGIFLDGTLVEAPYIREEITGGEAVITGDFTP 235
Cdd:PRK13024 150 DDLTDAGAKFDQDQTNRPSVSLKLKSEGAKKWAKVTEKNskkgpPNNRIAIVLDPKVISAPTVNQPINGGSVQISGNFTV 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 236 EMAKQVVRDLNYGALPMPISLLSTETIGATLGDRAVDASVKAGLYAFVVVALFLIAWYKFQGFVAVLALTIYTIINLVLF 315
Cdd:PRK13024 230 EEAKDLANLLNAGALPAPLKIIESRSVGPTLGQDAIDAGIIAGIIGFALIFLFMLVYYGLPGLIANIALLLYIFLTLGAL 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 316 KLIPVTLTAAGIAGFILSIGMAVDANILIFERTKEELKRGKNKYEALKEGFRRAWSSIRDSNLSSIITAVILYYFASTPV 395
Cdd:PRK13024 310 SSLGAVLTLPGIAGLVLGIGMAVDANVLIFERIKEELRKGKSLKKAFKKGFKNAFSTILDSNITTLIAAAILFFFGTGPV 389
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 818398924 396 iKGFALVFLIGVLVSMFSAVTASR--TILFAMSKDNPTPT 433
Cdd:PRK13024 390 -KGFATTLIIGILASLFTAVFLTRllLELLVKRGDKKPFL 428
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
36-422 |
8.10e-117 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 347.35 E-value: 8.10e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 36 LGLDLSGGTHLVYKADTSEIQSGDISG---------AMQSLRDTIERRVNLFGVSEPIVQIeeggvlggQREQRLIVELP 106
Cdd:TIGR01129 1 LGLDLRGGARVLLEVDMSTAVVLKLSEaevnairkdALEQVITILRNRVNALGVSEPVVQR--------QGKDRIVVELP 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 107 GITDVNEAIKRIGETPTLEFKI-LSKEGQDKIKLEG------ETLDKASVSSMFL----ETGLTGRMLQKASIQFDQNfA 175
Cdd:TIGR01129 73 GVTDTSRAKDILGGTATLEFRLvDDESTSPDDALAGnvpagsELLDSRSGDPKYYllkkSPVLTGDHITDATSSVDQR-S 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 176 NKPIIGLKFNEEGADLFAKITRENTGDVLGIFLDGTLVEAPYIREEITGGEAVITGDFTPEMAKQVVRDLNYGALPMPIS 255
Cdd:TIGR01129 152 GQPVVSFSLDSEGARIFGDFTQANIGKRLAIVLDNKVVSAPTIQEAITGGSGQITGNFTAEEANDLALVLRSGALPAPLQ 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 256 LLSTETIGATLGDRAVDASVKAGLYAFVVVALFLIAWYKFQGFVAVLALTIYTIINLVLFKLIPVTLTAAGIAGFILSIG 335
Cdd:TIGR01129 232 ILEERTIGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRLFGLIAAIALVINIVLILAILSAFGATLTLPGIAGLILTIG 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 336 MAVDANILIFERTKEELKRGKNKYEALKEGFRRAWSSIRDSNLSSIITAVILYYFASTPViKGFALVFLIGVLVSMFSAV 415
Cdd:TIGR01129 312 MAVDANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPV-KGFAVTLAIGIIASLFTAL 390
|
....*..
gi 818398924 416 TASRTIL 422
Cdd:TIGR01129 391 VFTRLLL 397
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
59-422 |
1.74e-68 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 233.07 E-value: 1.74e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 59 DISGAMQSLRDTIERRVNLFGVSEPIVQieeggvlgGQREQRLIVELPGITDVNEAIKRIGETPTLEFKIL--SKEGQDK 136
Cdd:PRK14726 158 RVSSALTQSIEVVRRRVAELGTTEPLIR--------RQGDDRIVVQVPGLVDPQRLKNLLNQPAKLSFRLVdsSMPAQEA 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 137 IKLEGE-------TLDKASVSSMFLETGL-TGRMLQKASIQFDQNfANKPIIGLKFNEEGADLFAKITRENTGDVLGIFL 208
Cdd:PRK14726 230 LNGRPPatsevlySLDDPPVPYLVERRAFvSGENLVDAQPVFDPQ-TNEPVVTFRLDAEGTQRFAQATQQNVGKHFAIVL 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 209 DGTLVEAPYIREEITGGEAVITGDFTPEMAKQVVRDLNYGALPMPISLLSTETIGATLGDRAVDASVKAGLYAFVVVALF 288
Cdd:PRK14726 309 DGQVISAPVIDEAITGGEGRISGNFSEQGANDLAVLLRAGALPATLTVVEERTVGPGLGADSIAAGLVAGLIAAILVAAL 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 289 LIAWYKFQGFVAVLALTIYTIINLVLFKLIPVTLTAAGIAGFILSIGMAVDANILIFERTKEELKRGKNKYEALKEGFRR 368
Cdd:PRK14726 389 MIGFYGFLGVIAVIALIVNVVLIIAVLSLLGATLTLPGIAGIVLTIGMAVDSNVLIYERIREEEKTGHSLIQALDRGFSR 468
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 818398924 369 AWSSIRDSNLSSIITAVILYYFASTPvIKGFALVFLIGVLVSMFSAVTASRTIL 422
Cdd:PRK14726 469 ALATIVDANVTILIAAVILFFLGSGA-VRGFAVTLAVGILTTVFTAFTLTRSLV 521
|
|
| secD |
PRK12933 |
protein translocase subunit SecD; |
50-422 |
8.79e-46 |
|
protein translocase subunit SecD;
Pssm-ID: 183831 [Multi-domain] Cd Length: 604 Bit Score: 167.17 E-value: 8.79e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 50 ADTSEIQSGDISGAMQSLRDTIERrvnlFGVSEPIVQieeggvlgGQREQRLIVELPGITDVNEAIKRIGETPTLEFKil 129
Cdd:PRK12933 222 QEKTKFRNLTVQQNLQIMRSRIEE----LGITEALVQ--------RQGEHRIRIELPGVQDPAAAKNVIGATASLAFY-- 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 130 skegqdkiklegETLDKASVSSMFLETG------------LTGRMLQKASIQFDQNFANKPIIGLkfNEEGADLFAKITR 197
Cdd:PRK12933 288 ------------EVKESGSVNAKVLKDKngrpvyvarrpvLGGEHIVDARASLGEMGMAEVNISL--DRAGGKKMSDFSR 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 198 ENTGDVLGIfldgtlVEAPYIREEitGGEAV--------------------ITGDFTPEMAKQVVRDLNYGALPMPISLL 257
Cdd:PRK12933 354 DNIGKPMAT------SYSEYSRDE--QGKTKqseevisvatiqsqlgdrfrITGAGSYQEAQQLALLLRAGSLTAPVTIV 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 258 STETIGATLGDRAVDASVKAGLYAFVVVALFLIAWYKFQGFVAVLALTIYTIINLVLFKLIP-VTLTAAGIAGFILSIGM 336
Cdd:PRK12933 426 EERTIGPSLGAENIENGFAALALGMGITLLFMALWYRRLGWVANVALIANMVCLFGLLALIPgAVLTLPGIAGLVLTVGM 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 337 AVDANILIFERTKEELKRGKNKYEALKEGFRRAWSSIRDSNLSSIITAVILYYFASTPvIKGFALVFLIGVLVSMFSAVT 416
Cdd:PRK12933 506 AVDTNVLIFERIKDKLKEGRSFAQAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGP-IQGFALTLGLGLLTSMFTGIF 584
|
....*.
gi 818398924 417 ASRTIL 422
Cdd:PRK12933 585 ASRALI 590
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
1-437 |
1.54e-43 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 162.87 E-value: 1.54e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 1 MAKYRFWAIIMIALAIVAGFFIWN---------SQKPD--ASRKFKLGLDLSGGTHLVYKADTSEiqsgdiSGAMQSLRD 69
Cdd:PRK13023 1 MLYFSRWKSALIWLAVLVSLIIASpnffsretlANLPDflPKKQVSLGLDLSGGSRLILQVQNAG------KTDLETTAN 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 70 TIERRVNLFGVSEPIVQieeggvlgGQREQRLIVELPGITDVNEAIKRIGETPTLEFKILSKEGQDKIKLEGE------- 142
Cdd:PRK13023 75 IMRQRLEELGYGNPVVE--------GEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTppadsei 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 143 --TLDKASVSSMFLETG-LTGRMLQ--KASIQFDQNfanKPIIGLKFNEEGADLFAKITRENTGDVLGIFLDGTLVEAPY 217
Cdd:PRK13023 147 vySFDDPPVGYLLKKTPiLTGHDITdaKASISADDG---QPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPT 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 218 IREEITGGEAVITGDFTPEMAKQVVRDLNYGALPMPISLLSTETIGATLGDRAVDASVKAGLYAFVVVALFLIAWYKFQG 297
Cdd:PRK13023 224 VSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLEERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILG 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 298 FVAVLALTIYTIINLVLFKLIPVTLTAAGIAGFILSIGMAVDANILIFERTKEELKRGKNKYEALKEGFRRAWSSIRDSN 377
Cdd:PRK13023 304 VIALVALVVNIIILTAVLSLIGASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDAN 383
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 378 LSSIITAVILYYFASTPViKGFALVFLIGVLVSMFSAVTASRTILFAMSKDNPTPTPPQR 437
Cdd:PRK13023 384 LTTLIAALVLFLLGSGTV-HGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKR 442
|
|
| 2A0604s01 |
TIGR00916 |
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ... |
261-415 |
5.95e-39 |
|
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273336 [Multi-domain] Cd Length: 192 Bit Score: 138.93 E-value: 5.95e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 261 TIGATLGDRAVDASVKAGLYAFVVVALFLIAWYKFQGFVAVLALTIY-TIINLVLFKLIPVTLTAAGIAGFILSIGMAVD 339
Cdd:TIGR00916 36 TVGPTLGGELIKAGIIALLIGLVLVLLYMLLRYEWRGAIAAIAALVHdVILILGVLSLFGATLTLPGIAGLLTIIGYSVD 115
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 818398924 340 ANILIFERTKEELKR--GKNKYEALKEGFRRAWSSIRDSNLSSIITAVILYYFAsTPVIKGFALVFLIGVLVSMFSAV 415
Cdd:TIGR00916 116 DTVVIFDRIREELRKykGRTFREAINLGINQTLSRIIDTNVTTLLAVLALYVFG-GGAIKGFALTLGIGVIAGTYSSI 192
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
204-415 |
2.24e-31 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 127.67 E-value: 2.24e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 204 LGIFLDGTLVEAPYIREEITGgEAVITGDFTPEMAKQVVRDLNYGALPMPISLLSTETIGATLGDRAVDASVKAGLYAFV 283
Cdd:PRK12911 842 MAVVLDGYVVSDPVLNVPLKD-HASVSGKFSHREVHRLATDLKSGAMSFVPEVLSEEVISPELGKSQRTQGIISVCLGLA 920
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 284 VVALFLIAWYKFQGFVAVLALtiytIINLVL----FKLIPVTLTAAGIAGFILSIGMAVDANILIFERTKEELKRGKNKY 359
Cdd:PRK12911 921 VLIVLMSVYYRFGGVIASGAV----LLNLLLiwaaLQYLDAPLTLSGLAGIVLAMGMAVDANVLVFERIREEYLLSRSLS 996
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 818398924 360 EALKEGFRRAWSSIRDSNLSSIITAVILYYFASTPvIKGFALVFLIGVLVSMFSAV 415
Cdd:PRK12911 997 ESVEAGYKKAFSAIFDSNLTTILASALLLMLDTGP-IKGFALTLIIGIFSSMFTAL 1051
|
|
| secD |
PRK08343 |
preprotein translocase subunit SecD; Reviewed |
9-412 |
2.66e-23 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 236245 [Multi-domain] Cd Length: 417 Bit Score: 101.10 E-value: 2.66e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 9 IIMIALAIVAGFFIWNSQKPDASRK-FKLGLDLSGGTHLVYKADtseiqsGDISGA-MQSLRDTIERRVNLFGVSEpiVQ 86
Cdd:PRK08343 14 LLLIVLVLASIVAIFPPGGGPGGFTnLQYGLDLSGGSWIQLKLE------GPVTQEtMDLVVEILESRLNALGLKD--IK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 87 IEEGGvlggqrEQRLIVELPGItDVNEAIKRIGETPTLEFKILSKEGQDKIKLEGEtlDKASVSSmfletgltgrmlqkA 166
Cdd:PRK08343 86 VYPVG------DQYIVVEVPGV-DADTAKEIIEKQGVFEARIQTPGNNNETVLTGD--DIESVGS--------------P 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 167 SIQFDQNFANKPIiglKFNEEGADLFAKITRE------NTGDVLGIFLDGTLVEAPYIREEITGGEA----VITGDFTP- 235
Cdd:PRK08343 143 SQDPSGGAWGVPF---TLSEDGAEKFAEVAKGkgatddPSGHPLDMYLDGELIYAAPLSPDLASGLAsgpvVITVGSTGt 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 236 -----EMAKQVVRDLNYGALPMPISLLSTETIGATLGDRAVDASVKAGLYAFVVVALFLIAWYKFQGFVAVLALTIYT-- 308
Cdd:PRK08343 220 teeakEEAKELYIHLRSGALPVKLDIEGSGSVSPSLGEQFKKGSLIAGLLALLAVALVVFLRYREPRIALPMVITSLSev 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 309 IINLVLFKLIPVTLTAAGIAGFILSIGMAVDANILIferTKEELKRGK----NKYEAlkeGFRRAWSSIRDSNLSSIIT- 383
Cdd:PRK08343 300 IIILGFAALIGWQLDLASIAGIIAVIGTGVDDLIII---TDEVLHEGKvpsrKVFLS---RIKRAFFIIFAAAATTIAAm 373
|
410 420
....*....|....*....|....*....
gi 818398924 384 AVILYYFASTpvIKGFALVFLIGVLVSMF 412
Cdd:PRK08343 374 SPLAVMGLGD--LKGFAITTILGVLIGVL 400
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
264-416 |
9.63e-12 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 67.19 E-value: 9.63e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 264 ATLGDRAVDASVKAGLYAFVVVALFLIAWYK--FQGFVAVLALTIYTIINLVLFKL--IPVTLTAAGIAGfiLSIGMAVD 339
Cdd:COG1033 597 AAINESVIESQIRSLLLALLLIFLLLLLAFRslRLGLISLIPNLLPILLTFGLMGLlgIPLNIATAVVAS--IALGIGVD 674
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 818398924 340 ANILIFERTKEELKRGKNKYEALKEGFRRAWSSIRdsnLSSIITA--VILYYFASTPVIKGFALVFLIGVLVSMFSAVT 416
Cdd:COG1033 675 YTIHFLSRYREERRKGGDLEEAIRRALRTTGKAIL---FTSLTLAagFGVLLFSSFPPLADFGLLLALGLLVALLAALL 750
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
254-428 |
7.56e-11 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 61.08 E-value: 7.56e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 254 ISLLSTETIGATLGDRAVDASVKAGLYAFVVVALFLiaWYKFQ---GFVAVLALTIYTIINLVLFKLIPVTLTAAGIAGF 330
Cdd:pfam02355 13 AEIISIETVGPTVGSELARKAVLALLFALLLILIYV--GLRFEwrfALGAIIALAHDVIITVGVFSLFGIEVDLATVAAL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 331 ILSIGMAVDANILIFERTKEELKRGKNKY------EALKEGFRRawsSIRDSnLSSIITAVILYYFAStPVIKGFALVFL 404
Cdd:pfam02355 91 LTIIGYSVNDTVVVFDRVRENLRKKTRATlneimnLSINQTLTR---TINTS-LTTLLVVVALFVFGG-GSLKDFSLALL 165
|
170 180
....*....|....*....|....
gi 818398924 405 IGVLVSMFSAVTASRTILFAMSKD 428
Cdd:pfam02355 166 VGVIVGTYSSIFIASPILLDLGER 189
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
262-416 |
1.41e-10 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 63.25 E-value: 1.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 262 IGATLGDRAVDASVKAGLYAFVVVALFLIAwyKFQGFVA-----VLALTIYTIINLVLF---KLIPVTLTAAGIAgFILS 333
Cdd:COG2409 159 LAADLNEAFEEDLGRAELITLPVALVVLLL--VFRSLVAallplLTAGLAVGVALGLLAllaAFTDVSSFAPNLL-TMLG 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 334 IGMAVDANILIFERTKEELKRGKNKYEALKEGFRRAWSSIrdsnLSSIITAVI-LY--YFASTPVIKGFALVFLIGVLVS 410
Cdd:COG2409 236 LGVGIDYALFLVSRYREELRAGEDREEAVARAVATAGRAV----LFSGLTVAIaLLglLLAGLPFLRSMGPAAAIGVAVA 311
|
....*.
gi 818398924 411 MFSAVT 416
Cdd:COG2409 312 VLAALT 317
|
|
| 3a0501s07 |
TIGR00966 |
protein-export membrane protein SecF; This bacterial protein is always found with the ... |
227-415 |
1.78e-09 |
|
protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273368 [Multi-domain] Cd Length: 246 Bit Score: 58.05 E-value: 1.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 227 AVITGDFTPEMAKQVVRDLnyGALPMPISLLSTETIGATLGDRAVDASVKAGLYAFVVVALFLiaWYKFQ---GFVAVLA 303
Cdd:TIGR00966 55 PTLDTEQSEELREALEEAL--KNVDPDAEIRSIDAVGPSVGGELARKAVLALLAALVLILIYI--TVRFEwrfALGAIVA 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 304 LTIYTIINLVLFKLIPVTLTAAGIAGFILSIGMAVDANILIFERTKEELKR--GKNKYEALKEGFRRAWSSIRDSNLSSI 381
Cdd:TIGR00966 131 LVHDVIITVGVYSLFGIEVNLTTVAALLTIIGYSINDTVVVFDRIRENLRKytRKTFTEVINLSINQTLSRTINTSLTTL 210
|
170 180 190
....*....|....*....|....*....|....
gi 818398924 382 ITAVILYYFAStPVIKGFALVFLIGVLVSMFSAV 415
Cdd:TIGR00966 211 LAVLALYVFGG-GVIKDFSLALLVGVIVGTYSSI 243
|
|
| SecF |
COG0341 |
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ... |
253-413 |
4.47e-09 |
|
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440110 [Multi-domain] Cd Length: 291 Bit Score: 57.37 E-value: 4.47e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 253 PISLLSTETIGATLGDRAVDASVKAGLYAFVVVALFLiaWYKFQ---GFVAVLALTIYTIINLVLFKL--IPVTLTAagI 327
Cdd:COG0341 114 DVEIVRVEFVGPTVGKELTRKALLALLVALIGILIYI--AFRFEwrfAVGAVVALLHDVLITLGIFSLfgLEFDLTF--I 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 328 AGFILSIGMAVDANILIFERTKEELKRGKNK-YE-----ALKEGFRRawsSIRDSnLSSIITAVILYYFAStPVIKGFAL 401
Cdd:COG0341 190 AALLTIIGYSLNDTVVVFDRIRENLRKYRKMtLAeiinlSINQTLSR---TINTS-LTTLLVVLALLFFGG-ETLRDFAL 264
|
170
....*....|..
gi 818398924 402 VFLIGVLVSMFS 413
Cdd:COG0341 265 ALLIGIIVGTYS 276
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
253-442 |
4.63e-09 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 58.70 E-value: 4.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 253 PISLLSTETIGATLGDRAVDASVKAGLYAFVVVALFLIAWYKFQ-GFVAVLALTIYTIINLVLFKL--IPVTLTAagIAG 329
Cdd:PRK13024 558 GGTIPSSETVGPTVGKELARNAIIAVLIALIGILLYILIRFEWTfSLGAILALLHDVLIVIGFFSLfrLEVDLTF--IAA 635
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 330 FILSIGMAVDANILIFERTKEELKrgKNKYEALKEGFRRawsSIRDS-------NLSSIITAVILYYFAStPVIKGFALV 402
Cdd:PRK13024 636 ILTIIGYSINDTVVVFDRIRENLR--LYKKKDLREIVNK---SINQTlsrtintSLTTLLVLLALLIFGG-SSLRNFSLA 709
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 818398924 403 FLIGVLVSMFSAV-TASRTILFAMSKDNPTPTPPQRGGEEK 442
Cdd:PRK13024 710 LLVGLIVGTYSSIfIAAPLWLDLEKRRLKKKKKRKKVKKWE 750
|
|
| MMPL |
pfam03176 |
MMPL family; Members of this family are putative integral membrane proteins from bacteria. ... |
274-416 |
2.13e-08 |
|
MMPL family; Members of this family are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport.
Pssm-ID: 308676 [Multi-domain] Cd Length: 332 Bit Score: 55.76 E-value: 2.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 274 SVKAGLYAFVVVALFLIAwykFQGFVAVLALTIytiinlvlfkLIPVTLTAAGIAgFILSIGMAVDANILIFERTKEELK 353
Cdd:pfam03176 165 SVVAALLPLLTVGLSLGA---AQGLVAILAHIL----------GIGLSTFALNLL-VVLLIAVGTDYALFLVSRYREELR 230
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 818398924 354 RGKNKYEALKEGFRRAWSSIRDSNLSSIITAVILyYFASTPVIKGFALVFLIGVLVSMFSAVT 416
Cdd:pfam03176 231 AGEDREEAVIRAVRGTGKVVTAAGLTVAIAMLAL-SFARLPVFAQVGPTIAIGVLVDVLAALT 292
|
|
| actII |
TIGR00833 |
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family ... |
283-416 |
4.41e-08 |
|
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family (TC 2.A.6.5)Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 129913 [Multi-domain] Cd Length: 910 Bit Score: 55.75 E-value: 4.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 283 VVVALFLIAWYKfqGFVAVLALTIYTIINLVL----------FKLIPVTLTAAGIAGfILSIGMAVDANILIFERTKEEL 352
Cdd:TIGR00833 184 IIVLIILLLVYR--SPITMLVPLVSVGFSVVVaqgivsllgiPGLIGVNAQTTVLLT-ALVIGAGTDYAVFLTGRYHEER 260
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 818398924 353 KRGKNKYEALKEGFRRAWSSIRDSNLSsIITAVILYYFASTPVIKGFALVFLIGVLVSMFSAVT 416
Cdd:TIGR00833 261 RKGESLEEAAAEALRGTGKAILGSALT-VAVAFLALSLARLPSFKTLGVSCAVGVLVALLNAVT 323
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
281-416 |
7.97e-08 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 54.48 E-value: 7.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 281 AFVVVALFLIAWYK-FQGFVAVLALTIYTII-NLVLFKLIPVTLTAAGIAGFILSIGMAVDANILIFERTKEELKRGKNK 358
Cdd:COG1033 227 ALLLILLLLFLFFRsLRGVLLPLLVVLLAVIwTLGLMGLLGIPLSPLTILVPPLLLAIGIDYGIHLLNRYREERRKGLDK 306
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 818398924 359 YEALKEGFRRAWSSIrdsnLSSIITAVILY---YFASTPVIKGFALVFLIGVLVSMFSAVT 416
Cdd:COG1033 307 REALREALRKLGPPV----LLTSLTTAIGFlslLFSDIPPIRDFGIVAAIGVLLAFLTSLT 363
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
288-412 |
3.49e-07 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 52.86 E-value: 3.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 288 FLIAWYKFQGFVAVLalTIYTIINLVLF--KLIPVTLTAAGIAGFILSIGMAVDANILIFERTKEELKRGKNKYE-ALKE 364
Cdd:NF037998 461 YLLFAYRLLGLFAII--IALTSISLTLYspTWFGLAIGPESITAIFIAIGLVLESCSLLFEAFKKHLYKNKRSIEeSFKI 538
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 818398924 365 GFRRAWSSIRDSNLSSIITAVILYYfASTPVIKGFALVFLIGVLVSMF 412
Cdd:NF037998 539 ANKETIGIIVDALVVLLIPNLSLFW-IGSNSIKSFATILLVGVIISLV 585
|
|
| PRK08578 |
PRK08578 |
preprotein translocase subunit SecF; Reviewed |
218-408 |
3.73e-07 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 236302 [Multi-domain] Cd Length: 292 Bit Score: 51.47 E-value: 3.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 218 IREEITGGEAVITGDFTPEMAKQVVRDLNYGALPMPISLL--STETIGATLGDRAVDASVKAGLYAFVVVAL--FLIawy 293
Cdd:PRK08578 78 VRKGSGNGYIITFGSGDDTDVDKLADAVKEFFNVDSISELnySEKQIGPTFGSQFQEQALKAVGFAFIGMAVvvFLI--- 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 294 kFQGFVA----VLALTIYTIINLVLFKLIPVTLTAAGIAGFILSIGMAVDANILIFERTkeeLKRGKNKYEALKEGFRRA 369
Cdd:PRK08578 155 -FRTPVPslavILSAFSDIIIALALMNLFGIELSLATVAALLMLIGYSVDSDILLTTRV---LKRRGTFDESIKRAMRTG 230
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 818398924 370 WSsirdSNLSSIITAVILYYFASTP---VIKGFALVFLIGVL 408
Cdd:PRK08578 231 IT----MTLTTIAAMAVLYIVSTIPqaeVLANIAAVLIFGLL 268
|
|
| secF |
PRK13021 |
preprotein translocase subunit SecF; Reviewed |
254-434 |
5.83e-07 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 237274 [Multi-domain] Cd Length: 297 Bit Score: 51.01 E-value: 5.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 254 ISLLSTETIGATLGDRAVDASVKAGLYAFVVVALFLIawYKFQGFVA---VLALTIYTIINLVLFKLIPVTLTAAGIAGF 330
Cdd:PRK13021 108 VQVLNSSIVGPQVGQELAEQGGLALLVAMLCILGYLS--YRFEWRLAsgaLFALVHDVIFVLAFFALTQMEFNLTVLAAV 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 331 ILSIGMAVDANILIFERTKEELkRGKNKY-------EALKEGFRRAWSSirdsNLSSIITAVILYYFASTPvIKGFALVF 403
Cdd:PRK13021 186 LAILGYSLNDSIIIADRIRELL-IAKPKLaiqeinnQAIVATFSRTMVT----SGTTLMTVGALWIMGGGP-LEGFSIAM 259
|
170 180 190
....*....|....*....|....*....|...
gi 818398924 404 LIGVLVSMFSAVTASRTI--LFAMSKDNPTPTP 434
Cdd:PRK13021 260 FIGILTGTFSSISVGTSLpeLLGLSPEHYKVQV 292
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
281-416 |
1.50e-06 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 50.61 E-value: 1.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 281 AFVVVALFLIAWYK----FQGFVAVLALTIYTIINLVLfKLIPVTLTAAGIAGFILSIGMavDANILIFERTKEELKRGK 356
Cdd:TIGR00921 577 AILVLMILLAVFRNpikaVFPLIAIGSGILWAIGLMGL-RGIPSFLAMATTISIILGLGM--DYSIHLAERYFEERKEHG 653
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 357 NKyEALKEGFRRAWSSIRDSNLSSIITAVILYyFASTPVIKGFALVFLIGVLVSMFSAVT 416
Cdd:TIGR00921 654 PK-EAITHTMERTGPGILFSGLTTAGGFLSLL-LSHFPIMRNFGLVQGIGVLSSLTAALV 711
|
|
| HpnN |
TIGR03480 |
hopanoid biosynthesis associated RND transporter like protein HpnN; The genomes containing ... |
257-424 |
1.88e-06 |
|
hopanoid biosynthesis associated RND transporter like protein HpnN; The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Pssm-ID: 274598 [Multi-domain] Cd Length: 862 Bit Score: 50.38 E-value: 1.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 257 LSTETIGATLgdravdasvkAGLYAFVVVALFLiaWYKFQGFVAVLALTIYTIINLVL---FKLIPV-TLTAAGIAGFIL 332
Cdd:TIGR03480 264 LATVSEGATV----------AGLLSFVLVLVLL--WLALRSPRLVFAVLVTLIVGLILtaaFATLAVgHLNLISVAFAVL 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 333 SIGMAVDANILIFERTKEELKRGKNKYEALKEGFRRAWSSIrdsNLSSIITAVILYYFASTPvIKGFALVFLIGVlVSMF 412
Cdd:TIGR03480 332 FIGLGVDFAIQFSLRYREERFRGGNHREALSVAARRMGAAL---LLAALATAAGFFAFLPTD-YKGVSELGIIAG-TGMF 406
|
170
....*....|..
gi 818398924 413 SAVTASRTILFA 424
Cdd:TIGR03480 407 IALFVTLTVLPA 418
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
281-416 |
7.08e-06 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 48.29 E-value: 7.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 281 AFVVVALFLIAWYKFQGFVA-VLALTIYTIINLVLFKLIP---VTLTAAGIAGFILSIGMAVDANILIFERTKEELKRGK 356
Cdd:TIGR00921 200 AISGILVVLVLLLDFKRWWRpLLPLVIILFGVAWVLGIMGwlgIPLYATTLLAVPMLIGVGIDYGIQTLNRYEEERDIGR 279
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 818398924 357 NKYEALKEGFRRAWSSIrdsnLSSIITAVI--LYYFAST-PVIKGFALVFLIGVLVSMFSAVT 416
Cdd:TIGR00921 280 AKGEAIVTAVRRTGRAV----LIALLTTSAgfAALALSEfPMVSEFGLGLVAGLITAYLLTLL 338
|
|
| COG4258 |
COG4258 |
Predicted exporter [General function prediction only]; |
272-420 |
2.23e-05 |
|
Predicted exporter [General function prediction only];
Pssm-ID: 443400 [Multi-domain] Cd Length: 783 Bit Score: 46.77 E-value: 2.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 272 DASVKAGLYAFVVVALFLIAWYKF-QGFVAVLALTIYTIINLVLFKLIPVTLTAAGIAGFILSIGMAVDANILIFERTKE 350
Cdd:COG4258 640 DALWLLLLALLLILLLLLLRLRSLrRALRVLLPPLLAVLLTLAILGLLGIPLNLFHLIALLLVLGIGIDYALFFTEGLLD 719
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 351 elkrgknkyealKEGFRRAWSSIRDSNLSSIITAVILYyFASTPVIKGFALVFLIGVLVSMFSAVTASRT 420
Cdd:COG4258 720 ------------KGELARTLLSILLAALTTLLGFGLLA-FSSTPALRSFGLTVLLGILLALLLAPLLAPR 776
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
238-422 |
8.16e-04 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 41.91 E-value: 8.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 238 AKQVVRDLNYGALPMPISLLSTETIGATLGDRAVDASVKAGLYAfvVVALFLIAWYKFQGFVAVLAL--TIYTIINLV-L 314
Cdd:PRK13023 544 AEQTVAVKLRGEFEQDYSFQRVDVVGPTVSEQLSRAGVLAVILS--LIGIFIYVWFRFRWQLALGAVlsTLHDVVILSgM 621
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 315 FKLIPVTLTAAGIAGFILSIGMAVDANILIFERTKEELKRGKNK--YEALKEGFRRAWSSIRDSNLSSIITAVILYYFAS 392
Cdd:PRK13023 622 FIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRYKSAplPAIIDASINQTLSRTLLTSFVTFLAHVPLYAFGG 701
|
170 180 190
....*....|....*....|....*....|
gi 818398924 393 TPvIKGFALVFLIGVLVSMFSAVTASRTIL 422
Cdd:PRK13023 702 SE-IRMFALALSVGIIVASYSSIFIAAPLL 730
|
|
| PRK09579 |
PRK09579 |
multidrug efflux RND transporter permease subunit; |
249-418 |
1.10e-03 |
|
multidrug efflux RND transporter permease subunit;
Pssm-ID: 169983 [Multi-domain] Cd Length: 1017 Bit Score: 41.36 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 249 ALPMPISLLSTETIGATLgDRAVDASVKAGLYAFVVVALFLIAWYKFqgFVAVLALTIYTIINLVLFKLIPVTLTAAGIA 328
Cdd:PRK09579 313 NLKVSIAYDATLFIQASI-DEVVKTLGEAVLIVIVVVFLFLGALRSV--LIPVVTIPLSMIGVLFFMQMMGYSINLLTLL 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 329 GFILSIGMAVDANILIFERTKEELKRGKNKYEALKEGFRRawssIRDSNLSSIITAVILYyfasTPV----------IKG 398
Cdd:PRK09579 390 AMVLAIGLVVDDAIVVVENIHRHIEEGKSPFDAALEGARE----IAMPVVSMTITLAAVY----APIgfltgltgalFKE 461
|
170 180
....*....|....*....|
gi 818398924 399 FALVFLIGVLVSMFSAVTAS 418
Cdd:PRK09579 462 FALTLAGAVIISGIVALTLS 481
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
236-442 |
2.05e-03 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 40.47 E-value: 2.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 236 EMAKQVVRDLNYGALPMPISLLSTETIGATLGDRAVDASVKAGLYAfvVVALFLIAWYKFQGFVAVLAL--TIY-TIINL 312
Cdd:PRK14726 636 ENAEQSAVTLVRGELEDDYDFRRVEVVGPAVSGELTMAATLGVLAA--LAAILIYIWIRFEWQFAVGAIiaTLHdVILTL 713
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818398924 313 VLFKLIPVTLTAAGIAGFILSIGMAVDANILIFERTKEELKRGKnkyealkegfRRAWSSIRDSNLS-----SIITAVI- 386
Cdd:PRK14726 714 GLFVLTGIEFNLTSIAAILTIVGYSLNDTVVVYDRVRENLRRYK----------KMPLPILIDASINqtlsrTVLTSATt 783
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 818398924 387 ------LYYFASTpVIKGFALVFLIGVLVSMFSA--VTASRTILFAMSKDNP--TPTPPQRGGEEK 442
Cdd:PRK14726 784 llallaLYLFGGE-VIRSFTFAMLFGVAVGTFSSiyIAAPVLIVFKLRPESLdgEESNKTDAGVKS 848
|
|
| Sec_GG |
pfam07549 |
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export ... |
30-54 |
8.10e-03 |
|
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force. This alignment encompasses a -GG- motif typically found in N-terminal half of the SecD/SecF proteins.
Pssm-ID: 462205 [Multi-domain] Cd Length: 27 Bit Score: 33.80 E-value: 8.10e-03
|
| |
