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Conserved domains on  [gi|818551058|gb|KKS02594|]
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Ribosomal RNA small subunit methyltransferase H [Candidatus Curtissbacteria bacterium GW2011_GWC2_41_21]

Protein Classification

16S rRNA (cytosine(1402)-N(4))-methyltransferase( domain architecture ID 10000958)

16S rRNA (cytosine(1402)-N(4))-methyltransferase specifically methylates the N4 position of cytidine 1402 (C1402) of 16S rRNA

Gene Ontology:  GO:0070475

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RmsH COG0275
16S rRNA C1402 N4-methylase RsmH [Translation, ribosomal structure and biogenesis]; 16S rRNA ...
 16-308 1.95e-149

16S rRNA C1402 N4-methylase RsmH [Translation, ribosomal structure and biogenesis]; 16S rRNA C1402 N4-methylase RsmH is part of the Pathway/BioSystem: 16S rRNA modification


:

Pssm-ID: 440044  Cd Length: 312  Bit Score: 421.39  E-value: 1.95e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818551058  16 YHTPALLQEVIDLLDPKPDKKFIDATIGGGGHTLEILKR---GGKVLGIDRDPDAIEHVKK--EVHSSQFTvhssgdlvL 90
Cdd:COG0275    6 YHIPVLLEEVLEALAPKPGGVYVDGTLGGGGHSRAILERlgpGGRLIGIDRDPDAIAAAKErlAEFGDRFT--------L 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818551058  91 VQENFNRIGQIAKEKGFEKVNGILFDLGVSSHQLEAAERGFSFEKNGPLDMRMDPNLTVRAFDLVNNFDQRRLNEIFKTY 170
Cdd:COG0275   78 VHGNFSELDEVLAELGIEKVDGILLDLGVSSPQLDDAERGFSFRRDGPLDMRMDPSQGLTAADVLNTYSEEELARILREY 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818551058 171 SQEKLSWSIAGAICSARQIKPIETTDELAEIIKEVYRRFRKKGRlHPATKTFQALRVVVNSELLNLKEALPQTLDLLITG 250
Cdd:COG0275  158 GEERFARRIARAIVEARKEKPITTTGELAEIIKRAVPAKARKGI-HPATRTFQALRIEVNDELEELEEALEAALDLLKPG 236

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 818551058 251 GRLVVVSFHSLEDEIVKRFFK------------------HESKLKVLTPKPIGPKDLEIRANPRSRSAKLRAAEKV 308
Cdd:COG0275  237 GRLAVISFHSLEDRIVKRFFRegskgcecppdlpvcecgHKPPLKLLTKKPIVPSEEEIARNPRARSAKLRVAERI 312
 
Name Accession Description Interval E-value
RmsH COG0275
16S rRNA C1402 N4-methylase RsmH [Translation, ribosomal structure and biogenesis]; 16S rRNA ...
 16-308 1.95e-149

16S rRNA C1402 N4-methylase RsmH [Translation, ribosomal structure and biogenesis]; 16S rRNA C1402 N4-methylase RsmH is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 440044  Cd Length: 312  Bit Score: 421.39  E-value: 1.95e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818551058  16 YHTPALLQEVIDLLDPKPDKKFIDATIGGGGHTLEILKR---GGKVLGIDRDPDAIEHVKK--EVHSSQFTvhssgdlvL 90
Cdd:COG0275    6 YHIPVLLEEVLEALAPKPGGVYVDGTLGGGGHSRAILERlgpGGRLIGIDRDPDAIAAAKErlAEFGDRFT--------L 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818551058  91 VQENFNRIGQIAKEKGFEKVNGILFDLGVSSHQLEAAERGFSFEKNGPLDMRMDPNLTVRAFDLVNNFDQRRLNEIFKTY 170
Cdd:COG0275   78 VHGNFSELDEVLAELGIEKVDGILLDLGVSSPQLDDAERGFSFRRDGPLDMRMDPSQGLTAADVLNTYSEEELARILREY 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818551058 171 SQEKLSWSIAGAICSARQIKPIETTDELAEIIKEVYRRFRKKGRlHPATKTFQALRVVVNSELLNLKEALPQTLDLLITG 250
Cdd:COG0275  158 GEERFARRIARAIVEARKEKPITTTGELAEIIKRAVPAKARKGI-HPATRTFQALRIEVNDELEELEEALEAALDLLKPG 236

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 818551058 251 GRLVVVSFHSLEDEIVKRFFK------------------HESKLKVLTPKPIGPKDLEIRANPRSRSAKLRAAEKV 308
Cdd:COG0275  237 GRLAVISFHSLEDRIVKRFFRegskgcecppdlpvcecgHKPPLKLLTKKPIVPSEEEIARNPRARSAKLRVAERI 312
Methyltransf_5 pfam01795
MraW methylase family; Members of this family are probably SAM dependent methyltransferases ...
 17-308 9.34e-124

MraW methylase family; Members of this family are probably SAM dependent methyltransferases based on Swiss:P18595. This family appears to be related to pfam01596.


Pssm-ID: 396387  Cd Length: 309  Bit Score: 356.26  E-value: 9.34e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818551058   17 HTPALLQEVIDLLDPKPDKKFIDATIGGGGHTLEILKR--GGKVLGIDRDPDAIEHVKkevhssQFTVHSSGDLVLVQEN 94
Cdd:pfam01795   4 HIPVLLQETVDLLNPKPDGVYIDCTLGGGGHSEAILEQlpELRLIGIDRDPQAIARAK------ERLKPFEDRVTLVHGN 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818551058   95 FNRIGQIAKEKGFEKVNGILFDLGVSSHQLEAAERGFSFEKNGPLDMRMDPNLTVRAFDLVNNFDQRRLNEIFKTYSQEK 174
Cdd:pfam01795  78 FRFFKEALAELGVTKVDGILLDLGVSSPQLDGAERGFSFAHDAPLDMRMDQSQGLTAAEIVNTYSEEDLARIFKEYGEER 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818551058  175 LSWSIAGAICSARQIKPIETTDELAEIIKEVYRRFRKKGRLHPATKTFQALRVVVNSELLNLKEALPQTLDLLITGGRLV 254
Cdd:pfam01795 158 FSKRIARAIVERRKKKPIETTKELAEIISKAVPAKAKRKKGHPATRTFQALRIAVNDELESLEESLQQAPDLLAPGGRLA 237

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 818551058  255 VVSFHSLEDEIVKRFFKHESK------------------LKVLTPKPIGPKDLEIRANPRSRSAKLRAAEKV 308
Cdd:pfam01795 238 VISFHSLEDRIVKHFFREASKgpevpaglpvipeglepkLRLITKKPITPSEEEIKENPRSRSAKLRVAEKI 309
TIGR00006 TIGR00006
16S rRNA (cytosine(1402)-N(4))-methyltransferase; This model describes RsmH, a 16S rRNA ...
 17-307 4.59e-103

16S rRNA (cytosine(1402)-N(4))-methyltransferase; This model describes RsmH, a 16S rRNA methyltransferase. Previously, this gene was designated MraW, known to be essential in E. coli and widely conserved in bacteria. [Protein synthesis, tRNA and rRNA base modification]


Pssm-ID: 272849  Cd Length: 307  Bit Score: 303.94  E-value: 4.59e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818551058   17 HTPALLQEVIDLLDPKPDKKFIDATIGGGGHTLEILKR--GGKVLGIDRDPDAIEHVKKevhssqftVHSSGDLVLVQEN 94
Cdd:TIGR00006   4 HQSVLLDEVVEGLNIKPDGIYIDGTLGRGGHSKAILSQlgEGRLIGIDRDPQAIAFAKE--------ILSDLRFVIIHDN 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818551058   95 FNRIGQIAKEKGFEKVNGILFDLGVSSHQLEAAERGFSFEKNGPLDMRMDPNLTVRAFDLVNNFDQRRLNEIFKTYSQEK 174
Cdd:TIGR00006  76 FANFFEYLKELLVTKIDGILVDLGVSSPQLDDPERGFSFMHDGPLDMRMDQSQKLSAAEILNTYSEEDLEWILKKYGEER 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818551058  175 LSWSIAGAICSARQIKPIETTDELAEIIKEVYRRFRKKGRLHPATKTFQALRVVVNSELLNLKEALPQTLDLLITGGRLV 254
Cdd:TIGR00006 156 FSKRIARAIVERRKKKPIQTTKELAEVISKAVPGFSKYKSIHPATRVFQAIRIYVNDELEELEEALQFAPNLLAPGGRLS 235

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 818551058  255 VVSFHSLEDEIVKRFFKHESK------------------LKVLTPKPIGPKDLEIRANPRSRSAKLRAAEK 307
Cdd:TIGR00006 236 IISFHSLEDRIVKNFFRELSKgpqvppglpvkeeqlyalGKRITKKPITPSEEEIKENPRSRSAKLRVAEK 306
rADc smart00650
Ribosomal RNA adenine dimethylases;
21-83 4.77e-03

Ribosomal RNA adenine dimethylases;


Pssm-ID: 128898  Cd Length: 169  Bit Score: 37.11  E-value: 4.77e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 818551058    21 LLQEVIDLLDPKPDKKFIDatIGGG-GH-TLEILKRGGKVLGIDRDPDAIEHVKKEV-HSSQFTVH 83
Cdd:smart00650   1 VIDKIVRAANLRPGDTVLE--IGPGkGAlTEELLERAKRVTAIEIDPRLAPRLREKFaAADNLTVI 64
cbiT PRK00377
cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
 36-75 9.99e-03

cobalt-precorrin-6Y C(15)-methyltransferase; Provisional


Pssm-ID: 234740  Cd Length: 198  Bit Score: 36.70  E-value: 9.99e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 818551058  36 KFIDATIGGGGHTLE---ILKRGGKVLGIDRDPDAIEHVKKEV 75
Cdd:PRK00377  43 MILDIGCGTGSVTVEaslLVGETGKVYAVDKDEKAINLTRRNA 85
 
Name Accession Description Interval E-value
RmsH COG0275
16S rRNA C1402 N4-methylase RsmH [Translation, ribosomal structure and biogenesis]; 16S rRNA ...
 16-308 1.95e-149

16S rRNA C1402 N4-methylase RsmH [Translation, ribosomal structure and biogenesis]; 16S rRNA C1402 N4-methylase RsmH is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 440044  Cd Length: 312  Bit Score: 421.39  E-value: 1.95e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818551058  16 YHTPALLQEVIDLLDPKPDKKFIDATIGGGGHTLEILKR---GGKVLGIDRDPDAIEHVKK--EVHSSQFTvhssgdlvL 90
Cdd:COG0275    6 YHIPVLLEEVLEALAPKPGGVYVDGTLGGGGHSRAILERlgpGGRLIGIDRDPDAIAAAKErlAEFGDRFT--------L 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818551058  91 VQENFNRIGQIAKEKGFEKVNGILFDLGVSSHQLEAAERGFSFEKNGPLDMRMDPNLTVRAFDLVNNFDQRRLNEIFKTY 170
Cdd:COG0275   78 VHGNFSELDEVLAELGIEKVDGILLDLGVSSPQLDDAERGFSFRRDGPLDMRMDPSQGLTAADVLNTYSEEELARILREY 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818551058 171 SQEKLSWSIAGAICSARQIKPIETTDELAEIIKEVYRRFRKKGRlHPATKTFQALRVVVNSELLNLKEALPQTLDLLITG 250
Cdd:COG0275  158 GEERFARRIARAIVEARKEKPITTTGELAEIIKRAVPAKARKGI-HPATRTFQALRIEVNDELEELEEALEAALDLLKPG 236

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 818551058 251 GRLVVVSFHSLEDEIVKRFFK------------------HESKLKVLTPKPIGPKDLEIRANPRSRSAKLRAAEKV 308
Cdd:COG0275  237 GRLAVISFHSLEDRIVKRFFRegskgcecppdlpvcecgHKPPLKLLTKKPIVPSEEEIARNPRARSAKLRVAERI 312
Methyltransf_5 pfam01795
MraW methylase family; Members of this family are probably SAM dependent methyltransferases ...
 17-308 9.34e-124

MraW methylase family; Members of this family are probably SAM dependent methyltransferases based on Swiss:P18595. This family appears to be related to pfam01596.


Pssm-ID: 396387  Cd Length: 309  Bit Score: 356.26  E-value: 9.34e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818551058   17 HTPALLQEVIDLLDPKPDKKFIDATIGGGGHTLEILKR--GGKVLGIDRDPDAIEHVKkevhssQFTVHSSGDLVLVQEN 94
Cdd:pfam01795   4 HIPVLLQETVDLLNPKPDGVYIDCTLGGGGHSEAILEQlpELRLIGIDRDPQAIARAK------ERLKPFEDRVTLVHGN 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818551058   95 FNRIGQIAKEKGFEKVNGILFDLGVSSHQLEAAERGFSFEKNGPLDMRMDPNLTVRAFDLVNNFDQRRLNEIFKTYSQEK 174
Cdd:pfam01795  78 FRFFKEALAELGVTKVDGILLDLGVSSPQLDGAERGFSFAHDAPLDMRMDQSQGLTAAEIVNTYSEEDLARIFKEYGEER 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818551058  175 LSWSIAGAICSARQIKPIETTDELAEIIKEVYRRFRKKGRLHPATKTFQALRVVVNSELLNLKEALPQTLDLLITGGRLV 254
Cdd:pfam01795 158 FSKRIARAIVERRKKKPIETTKELAEIISKAVPAKAKRKKGHPATRTFQALRIAVNDELESLEESLQQAPDLLAPGGRLA 237

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 818551058  255 VVSFHSLEDEIVKRFFKHESK------------------LKVLTPKPIGPKDLEIRANPRSRSAKLRAAEKV 308
Cdd:pfam01795 238 VISFHSLEDRIVKHFFREASKgpevpaglpvipeglepkLRLITKKPITPSEEEIKENPRSRSAKLRVAEKI 309
TIGR00006 TIGR00006
16S rRNA (cytosine(1402)-N(4))-methyltransferase; This model describes RsmH, a 16S rRNA ...
 17-307 4.59e-103

16S rRNA (cytosine(1402)-N(4))-methyltransferase; This model describes RsmH, a 16S rRNA methyltransferase. Previously, this gene was designated MraW, known to be essential in E. coli and widely conserved in bacteria. [Protein synthesis, tRNA and rRNA base modification]


Pssm-ID: 272849  Cd Length: 307  Bit Score: 303.94  E-value: 4.59e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818551058   17 HTPALLQEVIDLLDPKPDKKFIDATIGGGGHTLEILKR--GGKVLGIDRDPDAIEHVKKevhssqftVHSSGDLVLVQEN 94
Cdd:TIGR00006   4 HQSVLLDEVVEGLNIKPDGIYIDGTLGRGGHSKAILSQlgEGRLIGIDRDPQAIAFAKE--------ILSDLRFVIIHDN 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818551058   95 FNRIGQIAKEKGFEKVNGILFDLGVSSHQLEAAERGFSFEKNGPLDMRMDPNLTVRAFDLVNNFDQRRLNEIFKTYSQEK 174
Cdd:TIGR00006  76 FANFFEYLKELLVTKIDGILVDLGVSSPQLDDPERGFSFMHDGPLDMRMDQSQKLSAAEILNTYSEEDLEWILKKYGEER 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818551058  175 LSWSIAGAICSARQIKPIETTDELAEIIKEVYRRFRKKGRLHPATKTFQALRVVVNSELLNLKEALPQTLDLLITGGRLV 254
Cdd:TIGR00006 156 FSKRIARAIVERRKKKPIQTTKELAEVISKAVPGFSKYKSIHPATRVFQAIRIYVNDELEELEEALQFAPNLLAPGGRLS 235

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 818551058  255 VVSFHSLEDEIVKRFFKHESK------------------LKVLTPKPIGPKDLEIRANPRSRSAKLRAAEK 307
Cdd:TIGR00006 236 IISFHSLEDRIVKNFFRELSKgpqvppglpvkeeqlyalGKRITKKPITPSEEEIKENPRSRSAKLRVAEK 306
UbiE COG2226
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ...
 21-83 8.46e-08

Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis


Pssm-ID: 441828 [Multi-domain]  Cd Length: 143  Bit Score: 50.38  E-value: 8.46e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 818551058  21 LLQEVIDLLDPKPDKKFIDATIGGGGHTLEILKRGGKVLGIDRDPDAIEHVKKEVHSSQFTVH 83
Cdd:COG2226   10 GREALLAALGLRPGARVLDLGCGTGRLALALAERGARVTGVDISPEMLELARERAAEAGLNVE 72
SmtA COG0500
SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, ...
 16-135 2.10e-04

SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only];


Pssm-ID: 440266 [Multi-domain]  Cd Length: 199  Bit Score: 41.44  E-value: 2.10e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818551058  16 YHTPALLQEVIDLLDPKPDKKFIDATIGGGGHTLEILKR-GGKVLGIDRDPDAIEHVKKEVHSSQFtvhssGDLVLVQEN 94
Cdd:COG0500    9 ELLPGLAALLALLERLPKGGRVLDLGCGTGRNLLALAARfGGRVIGIDLSPEAIALARARAAKAGL-----GNVEFLVAD 83

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 818551058  95 FNRIGQIAkekgFEKVNGIlFDLGVSSHqLEAAERGFSFEK 135
Cdd:COG0500   84 LAELDPLP----AESFDLV-VAFGVLHH-LPPEEREALLRE 118
TrmA COG2265
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure ...
 18-73 2.20e-04

tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 441866 [Multi-domain]  Cd Length: 377  Bit Score: 42.47  E-value: 2.20e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 818551058  18 TPALLQEVIDLLDPKPDKKFIDATIGGGGHTLEILKRGGKVLGIDRDPDAIEHVKK 73
Cdd:COG2265  218 AEALYAAALEWLDLTGGERVLDLYCGVGTFALPLARRAKKVIGVEIVPEAVEDARE 273
UbiG COG2227
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and ...
 22-73 1.84e-03

2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and metabolism]; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 441829 [Multi-domain]  Cd Length: 126  Bit Score: 37.69  E-value: 1.84e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 818551058  22 LQEVIDLLDPKPdKKFIDATIGGGGHTLEILKRGGKVLGIDRDPDAIEHVKK 73
Cdd:COG2227   14 LAALLARLLPAG-GRVLDVGCGTGRLALALARRGADVTGVDISPEALEIARE 64
Methyltransf_25 pfam13649
Methyltransferase domain; This family appears to be a methyltransferase domain.
 43-83 2.68e-03

Methyltransferase domain; This family appears to be a methyltransferase domain.


Pssm-ID: 463945 [Multi-domain]  Cd Length: 96  Bit Score: 36.39  E-value: 2.68e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 818551058   43 GGGGHTLEILKRGG-KVLGIDRDPDAIEHVKKEVHSSQFTVH 83
Cdd:pfam13649   7 GTGRLTLALARRGGaRVTGVDLSPEMLERARERAAEAGLNVE 48
rADc smart00650
Ribosomal RNA adenine dimethylases;
21-83 4.77e-03

Ribosomal RNA adenine dimethylases;


Pssm-ID: 128898  Cd Length: 169  Bit Score: 37.11  E-value: 4.77e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 818551058    21 LLQEVIDLLDPKPDKKFIDatIGGG-GH-TLEILKRGGKVLGIDRDPDAIEHVKKEV-HSSQFTVH 83
Cdd:smart00650   1 VIDKIVRAANLRPGDTVLE--IGPGkGAlTEELLERAKRVTAIEIDPRLAPRLREKFaAADNLTVI 64
cbiT PRK00377
cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
 36-75 9.99e-03

cobalt-precorrin-6Y C(15)-methyltransferase; Provisional


Pssm-ID: 234740  Cd Length: 198  Bit Score: 36.70  E-value: 9.99e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 818551058  36 KFIDATIGGGGHTLE---ILKRGGKVLGIDRDPDAIEHVKKEV 75
Cdd:PRK00377  43 MILDIGCGTGSVTVEaslLVGETGKVYAVDKDEKAINLTRRNA 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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